ClCG10G012340 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G012340
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Elongation factor 1-alpha
Location	CG_Chr10 : 26317537 .. 26319355 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTGGTGAGGAACCGATTCTCTCTCGGTTGGACCGGCTGGATAATATGGTGAGTTTGTTTTCAGCTTACAATGAAAATTCAAAATTCAAATTAAGATTGAAAAAAATGATTTTGTTTTCTTTTTTTTTTTTTTTCTCTCCTTTTGTTGTGAATATGTTCTTGTGCGGACAAGGTGGGGAAAATGATGGGTTTTGATGTTTGTTTCTCGGGAAAATGAGTGGGAAAATGAGAAGAGTTGGTTGGTGAGAGATTCGTGGCTTAGCTGCATGGGCTGTCTAATTTTTCTTTTTTAATTATTCTGAATTTCACGATTCGTTTTGTAATTTTGATGTTGATGTTTATTTCTTTCTTTGTTTATTTATTTATTTATTGTTGTGTTATTTAAAAATTATGGAGTAGAATAATGCTTTCTTCTAATATGGTCGGTGTAATTTTAAGAACGTCCATCTCAATCAATCTACTTCTTACGAATCAAATAGTTTGGGAGTTCTAGTGAGTGAAGGATTAAAGTCATAGAGAGAGTTTGAAAGTCTTTGGGGATGTTAAAATTACTTTTTTTCATCTTCATCACTAAAAATAGGCCTTTAATCACTTAAATGTTAATTTCATATATTAAATTTACATTTTAAATACAAATTTAATGACTAAACGACACGGCTTATTGCTTTAAAATATGACAAATAAATAGAAACATAGGTCCAAGATATTATAGTTTTTATATGTACTTAGATAGCAAATTCATTAATAGGTAGGGAGCATTATTGTGAGTATGGTAGTTCGTAATAACCTTTTCTAAGGTTAAGATTTGATTAGTTTATGGATGAGTACTCTTTTTTAAAAATATGATAATAATAATAATAAAATCCAACAATTCACATAAATGTCTTAGTTCGTTTTTTTTTTTTGTTTTTTTTATTTTATAAAAAAAACTATATTATAGAAGGGACTTAAAAATCAGAACGAATACAACTTCATATTAGAATTTGAAGTTTAAGGAAAATGGACAAGTTTTAATTAGAGGACTGCCTTGCAATTTGAGTATTTCCCAATTATTTGTATTATTGCAATTAATTAATAAGAAGGCACCGACTAAAATTTTAAGTTTCGAGAAGGTGAAAGATGGGAAGTATTGGGTATTGTTTTAAATTTTATATTTTTACGAAAGAAAGAAGGAAATAAATAAATAAAGATATAATTGTAATAGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGAAAGTCTCCAAAGAGCTCATGTGCATCCACACCATCAAGTGGGACCCTGACGAGCGATTATCACACGTCGTCCGTTGATCTCTCGCCAAAAAGTCTGGAGAAGCACTGCCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTCGACAGAATGGATAATTTAGAGGATAGAGTCCTGAAGGTAAAAAAAAATGTAGATGTTCCTATTGCACGGCTATTTCTTAAATTCTAACATATACAAATTATTTTAATTATTCCTACTTCTCAACTAAGTAGTTTACAAACTCATTTTTAAAATTTACTAAATATATGTGATAGATTTATGCACTCTTAAATTTATGTAATGGATTTATGCATTTTCAATACTAAGCTCTTTTTGTATTGGATATTAAACAGCTTTGTCTACAAGTGGAAGGAGAGATAGAAAGGGAGAGGGAAATGATAATGGTTGAGAAGAACAAGAAGAAATCTAAGAAGAGCTTTAAACAACTTGTTCAACAGTGCATGACCGGCCAGGGAACGCGTGAGTCATGGTCTTGATCGAACTATGTTTTTCGTTTCT

mRNA sequence

ATGGCTGTTGGTGAGGAACCGATTCTCTCTCGGTTGGACCGGCTGGATAATATGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGAAAGTCTCCAAAGAGCTCATGTGCATCCACACCATCAAGTGGGACCCTGACGAGCGATTATCACACGTCGTCCGTTGATCTCTCGCCAAAAAGTCTGGAGAAGCACTGCCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTCGACAGAATGGATAATTTAGAGGATAGAGTCCTGAAGCTTTGTCTACAAGTGGAAGGAGAGATAGAAAGGGAGAGGGAAATGATAATGGTTGAGAAGAACAAGAAGAAATCTAAGAAGAGCTTTAAACAACTTGTTCAACAGTGCATGACCGGCCAGGGAACGCGTGAGTCATGGTCTTGATCGAACTATGTTTTTCGTTTCT

Coding sequence (CDS)

ATGGCTGTTGGTGAGGAACCGATTCTCTCTCGGTTGGACCGGCTGGATAATATGTTGAGGCGGCTGGAGGAAATTAGAGGGTGCGGAAAGTCTCCAAAGAGCTCATGTGCATCCACACCATCAAGTGGGACCCTGACGAGCGATTATCACACGTCGTCCGTTGATCTCTCGCCAAAAAGTCTGGAGAAGCACTGCCGTCCGATCAACCACGTCGTCAAAGTCGCTGAACTCAAAGGAAGCCTCGTCGACAGAATGGATAATTTAGAGGATAGAGTCCTGAAGCTTTGTCTACAAGTGGAAGGAGAGATAGAAAGGGAGAGGGAAATGATAATGGTTGAGAAGAACAAGAAGAAATCTAAGAAGAGCTTTAAACAACTTGTTCAACAGTGCATGACCGGCCAGGGAACGCGTGAGTCATGGTCTTGA

Protein sequence

MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKSLEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSKKSFKQLVQQCMTGQGTRESWS

Homology

[Close]

BLAST of ClCG10G012340 vs. TrEMBL
Match: A0A0A0LCD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.4e-65
Identity = 126/142 (88.73%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAV EEPILSRLDRLD MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSK 120
           LEKHCRPINHVVKVAELKGSLV+RMDNLEDRVLKLC+QVEG++ERE++MIMVEK ++K K
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 KSFKQLVQQCMTGQGT-RESWS 142
           +SFKQLVQ+CMTGQGT R+SWS
Sbjct: 121 RSFKQLVQRCMTGQGTRRDSWS 142

[Close]

BLAST of ClCG10G012340 vs. TrEMBL
Match: B9T1P6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0493230 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.9e-39
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAV EEPILSRLDRLD MLR+LE++RG  +SPKSSCASTPSSGTLTS+ H SS+DLSPKS
Sbjct: 1   MAVPEEPILSRLDRLDTMLRQLEDMRGSNRSPKSSCASTPSSGTLTSEGHVSSIDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSK 120
           LEKHCRPIN V+   E+KG+LV+R+D LEDR+LKLC+Q+E  +E ER+     + +   K
Sbjct: 61  LEKHCRPINRVMMETEIKGTLVERLDLLEDRLLKLCMQLEEGLEAERKREEENRERSGKK 120

Query: 121 KSFKQLVQQCMTGQ 135
           K  K LV+  + G+
Sbjct: 121 KGLKGLVRNIVKGK 134

[Close]

BLAST of ClCG10G012340 vs. TrEMBL
Match: A0A061DWD6_THECC (Cellulose synthase OS=Theobroma cacao GN=TCM_005879 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.6e-39
Identity = 81/134 (60.45%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 5    EEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDL-SPKSLEK 64
            EEP++SRLDR+DNMLR+LEEIRGC KSP+SSCASTPSSGT TS+ H SSVDL SP SLEK
Sbjct: 1087 EEPVISRLDRVDNMLRQLEEIRGCSKSPRSSCASTPSSGTFTSEGHPSSVDLASPSSLEK 1146

Query: 65   HCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSKKSF 124
            HCRPI+HV+   ++KG+L+ R+D LEDR+LKLCL++E E+E E+      + +   KK  
Sbjct: 1147 HCRPIDHVMVETQVKGTLIQRLDQLEDRLLKLCLRLEEELEAEKRREESVEKRPAHKKGI 1206

Query: 125  KQLVQQCMTGQGTR 138
            KQ V+QC+ G+ ++
Sbjct: 1207 KQFVKQCVKGKHSK 1220

[Close]

BLAST of ClCG10G012340 vs. TrEMBL
Match: V4TR39_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033658mg PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.2e-37
Identity = 83/136 (61.03%), Postives = 103/136 (75.74%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAV EEPILSRLDRLDN+LR+LEEIR C +SPKSSCASTPSSGT  S+   SSV+ SP S
Sbjct: 59  MAVTEEPILSRLDRLDNLLRQLEEIRSCNRSPKSSCASTPSSGTFRSEGQASSVEFSPNS 118

Query: 61  LEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSK 120
           LEKHCRPI+ VV    +KG++V+R+D +E  VLKLCLQ+E E+E E+     E +KK  K
Sbjct: 119 LEKHCRPIDRVVMETGVKGTVVERLDRIEAHVLKLCLQLEEELEAEKTR-EEEGDKKAHK 178

Query: 121 KSFKQLVQQCMTGQGT 137
           K  KQ V+Q + G+G+
Sbjct: 179 KGLKQFVKQIVRGKGS 193

[Close]

BLAST of ClCG10G012340 vs. TrEMBL
Match: A0A0R0GRF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G202600 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-36
Identity = 81/135 (60.00%), Postives = 102/135 (75.56%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MA  EEPILSR+DRLDNMLR+LE IRGC  SPKSSCASTP+SG   SD H SS D SPKS
Sbjct: 1   MAATEEPILSRIDRLDNMLRQLEVIRGCNPSPKSSCASTPTSG---SDGHVSSTDFSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSK 120
           LEKHCRPI  V+   E+KG++++R++ +EDR+LKLCLQ+E E+  +++    EK     K
Sbjct: 61  LEKHCRPIEFVMMETEVKGTMIERLNQVEDRMLKLCLQLEEELVAKKK--EEEKKMNSPK 120

Query: 121 KSFKQLVQQCMTGQG 136
           K FKQLV+QC+  +G
Sbjct: 121 KGFKQLVKQCVKARG 130

[Close]

BLAST of ClCG10G012340 vs. TAIR10
Match: AT1G07985.1 (AT1G07985.1 Expressed protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-25
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLS-PK 60
           MAV EEPILSRLDR+D M+R+LEE++G   SP+SS  STPSSGT       SS+DLS P+
Sbjct: 1   MAVVEEPILSRLDRIDFMVRKLEEMKG--SSPRSSSPSTPSSGT-----QPSSMDLSSPR 60

Query: 61  SLEK-HCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIERER---EMIMVEKN 120
           S+ K HCR +  V +  E KG+L++R++N+E++VLKLC Q E E+E ER   +    EK 
Sbjct: 61  SIGKVHCRSMEQVREETERKGTLLERLNNVEEQVLKLCSQFEEEVEEERKREDKTDKEKK 120

Query: 121 KKKSKKSFKQLVQQ 130
             K KK  ++LV +
Sbjct: 121 TPKKKKGLRKLVDK 127

[Close]

BLAST of ClCG10G012340 vs. NCBI nr
Match: gi|449466687|ref|XP_004151057.1| (PREDICTED: uncharacterized protein LOC101205386 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 7.7e-65
Identity = 126/142 (88.73%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAV EEPILSRLDRLD MLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSK 120
           LEKHCRPINHVVKVAELKGSLV+RMDNLEDRVLKLC+QVEG++ERE++MIMVEK ++K K
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 KSFKQLVQQCMTGQGT-RESWS 142
           +SFKQLVQ+CMTGQGT R+SWS
Sbjct: 121 RSFKQLVQRCMTGQGTRRDSWS 142

[Close]

BLAST of ClCG10G012340 vs. NCBI nr
Match: gi|659123713|ref|XP_008461800.1| (PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-64
Identity = 127/143 (88.81%), Postives = 137/143 (95.80%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAV EEPILSRLDRLDNMLRRLEEI+GC KSPKSSCASTPSSGTLTSDYHTSSVDLSPKS
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMV-EKNKKKS 120
           LEKHCRPINHVV+VAELKGSLV+RMDNLEDRVLKLC+QVEGE+ERE++M+MV +K KKK 
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KKSFKQLVQQCMTGQG-TRESWS 142
           KKSFKQLVQQCMTGQG TR+SWS
Sbjct: 121 KKSFKQLVQQCMTGQGTTRDSWS 143

[Close]

BLAST of ClCG10G012340 vs. NCBI nr
Match: gi|255582779|ref|XP_002532165.1| (PREDICTED: uncharacterized protein LOC8271835 isoform X1 [Ricinus communis])

HSP 1 Score: 169.1 bits (427), Expect = 5.6e-39
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60
           MAV EEPILSRLDRLD MLR+LE++RG  +SPKSSCASTPSSGTLTS+ H SS+DLSPKS
Sbjct: 1   MAVPEEPILSRLDRLDTMLRQLEDMRGSNRSPKSSCASTPSSGTLTSEGHVSSIDLSPKS 60

Query: 61  LEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSK 120
           LEKHCRPIN V+   E+KG+LV+R+D LEDR+LKLC+Q+E  +E ER+     + +   K
Sbjct: 61  LEKHCRPINRVMMETEIKGTLVERLDLLEDRLLKLCMQLEEGLEAERKREEENRERSGKK 120

Query: 121 KSFKQLVQQCMTGQ 135
           K  K LV+  + G+
Sbjct: 121 KGLKGLVRNIVKGK 134

[Close]

BLAST of ClCG10G012340 vs. NCBI nr
Match: gi|590724636|ref|XP_007052525.1| (Cellulose synthase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 168.3 bits (425), Expect = 9.5e-39
Identity = 81/134 (60.45%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 5    EEPILSRLDRLDNMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDL-SPKSLEK 64
            EEP++SRLDR+DNMLR+LEEIRGC KSP+SSCASTPSSGT TS+ H SSVDL SP SLEK
Sbjct: 1087 EEPVISRLDRVDNMLRQLEEIRGCSKSPRSSCASTPSSGTFTSEGHPSSVDLASPSSLEK 1146

Query: 65   HCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNKKKSKKSF 124
            HCRPI+HV+   ++KG+L+ R+D LEDR+LKLCL++E E+E E+      + +   KK  
Sbjct: 1147 HCRPIDHVMVETQVKGTLIQRLDQLEDRLLKLCLRLEEELEAEKRREESVEKRPAHKKGI 1206

Query: 125  KQLVQQCMTGQGTR 138
            KQ V+QC+ G+ ++
Sbjct: 1207 KQFVKQCVKGKHSK 1220

[Close]

BLAST of ClCG10G012340 vs. NCBI nr
Match: gi|1009129323|ref|XP_015881704.1| (PREDICTED: uncharacterized protein LOC107417610 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-38
Identity = 86/138 (62.32%), Postives = 111/138 (80.43%), Query Frame = 1


Query: 1   MAVGEEPILSRLDRLDNMLRRLEEIRGCGKS---PKSSCASTPSSGTLTS-DYHTSSVDL 60
           + + EEPILSRLDRLDNMLR+LEEIRGC +S   PKSS ASTPSSGTLTS D H SS+D 
Sbjct: 5   IGITEEPILSRLDRLDNMLRQLEEIRGCNRSSSSPKSSYASTPSSGTLTSTDGHLSSLDF 64

Query: 61  SPKSLEKHCRPINHVVKVAELKGSLVDRMDNLEDRVLKLCLQVEGEIEREREMIMVEKNK 120
           SPKS+EKHCRPI+HV+    +KG+L++R+D++EDRVLKLCLQ+E  +E E++    EK K
Sbjct: 65  SPKSIEKHCRPIDHVIMETGVKGTLIERLDHVEDRVLKLCLQMEEGLEAEKKREETEK-K 124

Query: 121 KKSKKSFKQLVQQCMTGQ 135
           +++ K  KQLV+QC+ G+
Sbjct: 125 ERNNKGLKQLVKQCLKGK 141

The following BLAST results are available for this feature:

BLAST of ClCG10G012340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCD9_CUCSA	5.4e-65	88.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695850 PE=4 SV=1	[more]
B9T1P6_RICCO	3.9e-39	62.69	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0493230 PE=4 SV=1	[more]
A0A061DWD6_THECC	6.6e-39	60.45	Cellulose synthase OS=Theobroma cacao GN=TCM_005879 PE=3 SV=1	[more]
V4TR39_9ROSI	6.2e-37	61.03	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033658mg PE=...	[more]
A0A0R0GRF8_SOYBN	2.4e-36	60.00	Uncharacterized protein OS=Glycine max GN=GLYMA_13G202600 PE=4 SV=1	[more]

BLAST of ClCG10G012340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07985.1	3.7e-25	50.75	Expressed protein	[more]

BLAST of ClCG10G012340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466687\|ref\|XP_004151057.1\|	7.7e-65	88.73	PREDICTED: uncharacterized protein LOC101205386 [Cucumis sativus]	[more]
gi\|659123713\|ref\|XP_008461800.1\|	1.7e-64	88.81	PREDICTED: uncharacterized protein LOC103500315 [Cucumis melo]	[more]
gi\|255582779\|ref\|XP_002532165.1\|	5.6e-39	62.69	PREDICTED: uncharacterized protein LOC8271835 isoform X1 [Ricinus communis]	[more]
gi\|590724636\|ref\|XP_007052525.1\|	9.5e-39	60.45	Cellulose synthase family protein isoform 1 [Theobroma cacao]	[more]
gi\|1009129323\|ref\|XP_015881704.1\|	2.1e-38	62.32	PREDICTED: uncharacterized protein LOC107417610 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0009833	plant-type primary cell wall biogenesis
biological_process	GO:0009834	plant-type secondary cell wall biogenesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005768	endosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G012340.1	ClCG10G012340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34190	FAMILY NOT NAMED	coord: 1..125 score: 1.4
None	No IPR available	PANTHER	PTHR34190:SF4	SUBFAMILY NOT NAMED	coord: 1..125 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G012340	Csa3G695850	Cucumber (Chinese Long) v2	cuwcgB190
ClCG10G012340	MELO3C023979	Melon (DHL92) v3.5.1	mewcgB315
ClCG10G012340	Cla017271	Watermelon (97103) v1	wcgwmB051
ClCG10G012340	Cla97C10G195160	Watermelon (97103) v2	wcgwmbB038
ClCG10G012340	Bhi11G001179	Wax gourd	wcgwgoB078
ClCG10G012340	CSPI03G29660	Wild cucumber (PI 183967)	cpiwcgB191
ClCG10G012340	Cucsa.249070	Cucumber (Gy14) v1	cgywcgB436
ClCG10G012340	CmaCh01G002280	Cucurbita maxima (Rimu)	cmawcgB387
ClCG10G012340	CmoCh01G002390	Cucurbita moschata (Rifu)	cmowcgB385
ClCG10G012340	CmoCh14G010180	Cucurbita moschata (Rifu)	cmowcgB206
ClCG10G012340	Cp4.1LG03g04590	Cucurbita pepo (Zucchini)	cpewcgB544
ClCG10G012340	CsGy3G027480	Cucumber (Gy14) v2	cgybwcgB175
ClCG10G012340	MELO3C023979.2	Melon (DHL92) v3.6.1	medwcgB309
ClCG10G012340	Carg07326	Silver-seed gourd	carwcgB0738
ClCG10G012340	Carg11219	Silver-seed gourd	carwcgB0792
ClCG10G012340	CsaV3_3G032130	Cucumber (Chinese Long) v3	cucwcgB195

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G012340	Silver-seed gourd	carwcgB0347
ClCG10G012340	Silver-seed gourd	carwcgB0443
ClCG10G012340	Cucumber (Chinese Long) v3	cucwcgB555
ClCG10G012340	Watermelon (97103) v2	wcgwmbB054
ClCG10G012340	Wax gourd	wcgwgoB134
ClCG10G012340	Watermelon (Charleston Gray)	wcgwcgB006
ClCG10G012340	Watermelon (Charleston Gray)	wcgwcgB008
ClCG10G012340	Cucumber (Gy14) v1	cgywcgB210
ClCG10G012340	Cucurbita maxima (Rimu)	cmawcgB221
ClCG10G012340	Cucurbita maxima (Rimu)	cmawcgB314
ClCG10G012340	Cucurbita maxima (Rimu)	cmawcgB792
ClCG10G012340	Cucurbita moschata (Rifu)	cmowcgB308
ClCG10G012340	Cucurbita moschata (Rifu)	cmowcgB790
ClCG10G012340	Wild cucumber (PI 183967)	cpiwcgB560
ClCG10G012340	Cucumber (Chinese Long) v2	cuwcgB531
ClCG10G012340	Melon (DHL92) v3.5.1	mewcgB187
ClCG10G012340	Watermelon (97103) v1	wcgwmB046
ClCG10G012340	Watermelon (97103) v1	wcgwmB047
ClCG10G012340	Watermelon (97103) v1	wcgwmB050
ClCG10G012340	Cucurbita pepo (Zucchini)	cpewcgB134
ClCG10G012340	Cucurbita pepo (Zucchini)	cpewcgB290
ClCG10G012340	Cucurbita pepo (Zucchini)	cpewcgB486
ClCG10G012340	Bottle gourd (USVL1VR-Ls)	lsiwcgB162
ClCG10G012340	Bottle gourd (USVL1VR-Ls)	lsiwcgB219
ClCG10G012340	Cucumber (Gy14) v2	cgybwcgB492
ClCG10G012340	Melon (DHL92) v3.6.1	medwcgB182