Cucsa.249030 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.249030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DNA-directed RNA polymerase II subunit RPB11
Location	scaffold02208 : 185907 .. 190381 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGCAGCTTTTCTTCTTCCATTACTGCAAAACCCAAAGCTCAAAGAGCAGCTTCACAAAGGACACCAAAAGCCATGAATGCTCCCGACCGATACGAGCGCTTCGTCGTTCCAGAGGGTACCAAAAAGTAGCTTCACAACCTCTACTTCTTTCTTTCTATTCAAACCAATTTTCACAGTTTCTAACTTTTTTTTCCTTCCTATCTAGGGTCTCATACGAGAGAGACACGAAAATCATTAATGCGGCGTCATTTACTATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGGATGTAATGACCCTTTTGAAAAATTTTAGATTACTGCTTGATATTTGTTTAAGTGGAGTTAGTTATCGGGTTTTGTTTTTTTCGACGAACAGGCAGCTGCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAATATAAAATTATTGTCCGGGTCAGTTCATTTTCCACTTGTTTTTGGGTTTTGTAATTTGAAATAGGGCTTTAAGGGGGCTTTTGAGATTCTGGGTTTTATTACCCTGTTCTGTTTCTTAGTGCTTGTTTTGATTGGATGAAGGATTTTAGGATTCTGCTTAAGTTTAAGCTGTTGGATTTAGTAGTAGCCGGTTTTATGTTCAAATTATTTCATTCATATTTCATCCCCGATGAGGGTTAATATTTCACTTGTTGAATCCTGTGCTTATCGATGACCTGACATGGAAGAGTATTAAACATGTGTTTAATCAAGCTTTTGAGTTCAGGAGTGATTTAACAAATATTCTCATTTCAACCTATGTTCTTTTTCTTGGTTTGTAATCTATTGAAGTTAGAAATCACTTGGCTTTGGTTCAAACGGGCTGAAGCTCGAGCTAAAAAAGCTATGTAACTTGGTTTACCATTGTCCTTAGGACCACCATGAGGATAATTGTTATTTGTTAGTAATAAGCCATTGAGCTTGTCAGTAGGAGTTTATCTTAAATAGAGTGAGTGGGGAGGAAGGAGGCAAAGATTTAGTTCGCATAGGCTTGGCCGCTTGGGCGAGAGTATTCAAGAGGGGAGGTCCCAAATACGTTGAGTATTAGGGGAGTCATTGTGGTTCATCACCCTTTATATATATTTCAATATCATTTTAGTACTTTGGTTAACTTTTTGAGGGAGACGAGGATAACTGTTTTCAAAAGACCATGTCCCATAACTTAACTGTGCCTGTTCTTCTATTGAGAACATGGTTCAATGGGGTTTCAACAAGATTATGTTGACCGACTTTTCTTATAGTGAGAAGTAGCTTCTTAAATTCTTTCAATTAATTAGAAAATGCTTGTGGTTCTGGTGCAAAAATGTTATTTCGTATATCTCAAATTTTAGATACGGTTTTTCATGTTGTTTGGAACCATTAGGATATCAAAATCTGGAAAATGAGACATTTGAAGTTGATGAGCTTCTTGGTTTTTTATGATTGTAGTGTTTTTTCTTGCCTCAAGTTAATCTAACCTATCTTACTGGATTGGCTACTTACAATCTTCGTACGAAGAGAATGTTTGGTACCCTATACTGGTCCTACTAAATATTACCTACGGATGGAATTGATCAGTCTCTGATCTGTTGCATGTCATACGTACAACAAAGGAACCTGAAGTGTCGTTTGAGCAAGGAGACAAGACGATGAATTTAACACGTCCAGCCCATCTACCTTACATGTTTGATGGGGTTCTTTATCGTATGATGGATAAATGATTTAATGTGGCCCTATAACCATTTTGTTCGCCTGTTTCTTACCTCCGTATAAACATGCATTTACGTTCTTGGACCCATATTTTACTGTTTCAAGATATTTTGTTTAACTTTAACTTAATGTGATTTTATATGTCTTTTGGTTTCATTATAAATTTTCAGTGAACTACCAACAGGTTGGTTTTTCGCCTTCTTGATATTTTAGTACAAAAGTGCACCTGTATATGGTACACCATGAACAGAAGTTGCATTTGAATGATTTCTCATAAACATCCAGAGAATGGTTTTTTTTTTCTTTTTCATTCTAAATACTCATCCGGACATCTTTTTCCTGTTCCTGTTGGTTTGATATGTATATATTGGGGTTTTTCTTCCACAAACTAATTATTACTACTCTTCAGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAATGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGAATTTGCCACTCTGTCTTTAAACTTAGTTTCAAAATCATGCAATTTAGCTAGTAAACATTCTCGGTGAAAAGTAAAGTGCTGTTGAAATCGATACCAAATCTCTTATCGAAAAAGGGAAAATAATTGATAGCAAGTCAAAAGAGGTTCGGAGTGATAGTGAGTTTGGATGAATTTGAAGAAAATGCTATTAAGTGAAGACACTTTTTCTATAAGCCCTTTTGAAAATAGCACTAATTAATTACTTCTCTCAAAAGAACTTAGTGTTTAGAAATACTTTTAATATATTCTTTATCTAATCAGACTCAAACTTTAAGGAGTGATTTTAACGAGTTAAAAACACTTTTCACCCTATTGAAAGTCATCTCATATTCATTGTACCCATTTGCAAAAATTGATGGTATTAAGGGAGGGAGGTAACTTCATTTGGTTAAAGGTCATGACGGTAACCTGTTTAAAATTTAATATACAATTAGTTTTCTTGACAGTGAATTGTAGTAGCTTGGGTGGTTGTCTATGAGAGACTGAGAATATAATTTACCTGGACACTCACAAATATAATTTTCTTTTTTTTCTTATGATATACATGAGTGTTCAAGTTAGCTTATATGCACCTCGACTAATCTCACAGGACAACCCGATTGGCTACAACGTTTGGGTGTCAAATAAACTTGGAGGAAATTAATTCCTAGGTAGGTGGCCATTCTGGATTGAACCCATGACCTCTTAATTTGTTATTAAGACTATGGGCCAACCTATGATGGTTCACTCACAAATATAAAAATTAAAATTAAAATAAAAGCTCAACTAAATGAAGTCTATTGTGGACGACAGTGGAAGTGGAGGTGGAGTGATGAGGTTACTAAAATTTCAACTGAGTCTGCATAACAAGTCTTGTTTGAGTTTTGACTGCATTTGGTTTTTGAGAAATGTGCCTGTTCTCTCATTCTCTCTCTACAATGGTTTTCATCTTTCCCAAAAACAAGTTTTCTATAAATTACTTTTTTTAGTTTTCAAAACTTGTTTTGGATTAGGAAAACACTCTTTAAAAGTAGACTACTTAACCAATAAACCAATATGTGGAATCGGTGCTAAAATCCCAAAATTGATATCAAACGTGACCTTAACAAATGATGCTTGGATTCTCATTCCCACATTTCCAATTCCATCCTTTTGCCCCCTGAATGTCATCAATTGGCCATAGGTACTTAACAGTTTGATATTTAGATCAAGAATGATTACTGATGTTTACATAATTATGATACTGTAAATAATGATATGGACTGTCTTCACTCTTACAAGTCAATCAACATCTGTGCTTTAAAACACTGTAAATCTCTCGACAACCTCAAAACCTGATTGATTGGCTTGTTGGGAGTGCAACTTCGGACTTCTCGAAGTTAGGGACATTAAACTGAGGCATTAAAGCTTCGAAACTTCTGCAACCTTATTGAGCAGGATCTGTCTTCTATGTTGTTCAACGGTATCCTTGAGTTATGAAATGATTTGATACTTCTTCCCCGCAGGCTGAGTTTGCTAAGTTCTCAAGGGACTATTGATTTGATTTTGGAAAACTTGTTGGAGCTCAATTCAAAATGCAGGTACAAGACAATGAGTTACTGACATGAAATGAATTTCCAAGAACTTTGTTTTGTTTTCTTTTAAGGTTTCTGAAACCATCTTGTAACTTGCTCAACTTTTGTTGTATGACAATGCTTCTAAATTATATATATTATTTGTCTTAGCACACTTCATGTTTGTGTTGATAGATATCCTTTTGAAAGTTTCAGTTTGATAGGTGTACTTACTCAAATTTAGTAATATTACGTTTTGATGGGTGTTAGATCTCTAATATATCAAGCAGGTGATTTTTTTTCTTCCTTTCATTTCAGGTAGTAGAAAGACATAATTATACCTTATTTGAATAGAATGATGGTGTTTTGTTGTCTTTTTACCAAGAAGGTAAAATAATCCTTGAGGCTTCAACCAACTTTGATACTCTTTTCATTTTGCCACATTCAACATTTTCGTTGCTCTTAATATTTGGGGAAAAAAGAACTTGAGTGTTTAAGGAGAAATAAAAATGATTGTGTTTATTGGGTTAGTACATATATCTATATGTGTGTGCACTTGCTTTGAAAGCTATTTTGAGTGGTTGGTGAATTGATTGTCTAAAAAATCTAATGTCATTCACACGTCTTTCTTTCTCTACGTCTTCTTCTTCTCCAATA

mRNA sequence

AGAAGGCAGCTTTTCTTCTTCCATTACTGCAAAACCCAAAGCTCAAAGAGCAGCTTCACAAAGGACACCAAAAGCCATGAATGCTCCCGACCGATACGAGCGCTTCGTCGTTCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACGAAAATCATTAATGCGGCGTCATTTACTATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGGATGCAGCTGCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAATATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAATGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGCTGAGTTTGCTAAGTTCTCAAGGGACTATTGATTTGATTTTGGAAAACTTGTTGGAGCTCAATTCAAAATGCAGGTAGTAGAAAGACATAATTATACCTTATTTGAATAGAATGATGGTGTTTTGTTGTCTTTTTACCAAGAAGGTAAAATAATCCTTGAGGCTTCAACCAACTTTGATACTCTTTTCATTTTGCCACATTCAACATTTTCGTTGCTCTTAATATTTGGGGAAAAAAGAACTTGAGTGTTTAAGGAGAAATAAAAATGATTGTGTTTATTGGGTTAGTACATATATCTATATGTGTGTGCACTTGCTTTGAAAGCTATTTTGAGTGGTTGGTGAATTGATTGTCTAAAAAATCTAATGTCATTCACACGTCTTTCTTTCTCTACGTCTTCTTCTTCTCCAATA

Coding sequence (CDS)

ATGAATGCTCCCGACCGATACGAGCGCTTCGTCGTTCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACGAAAATCATTAATGCGGCGTCATTTACTATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGGATGCAGCTGCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAATATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAATGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGCTGAGTTTGCTAAGTTCTCAAGGGACTATTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY*

Homology

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BLAST of Cucsa.249030 vs. Swiss-Prot
Match: NRPBB_ARATH (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-55
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+LKN FEAE AKFS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

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BLAST of Cucsa.249030 vs. Swiss-Prot
Match: RPB11_DICDI (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-27
Identity = 53/111 (47.75%), Postives = 84/111 (75.68%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK 112
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L+N+F  +  K
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQK 111

[Close]

BLAST of Cucsa.249030 vs. Swiss-Prot
Match: RPB11_MOUSE (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 106
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

[Close]

BLAST of Cucsa.249030 vs. Swiss-Prot
Match: RPB11_HUMAN (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 106
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

[Close]

BLAST of Cucsa.249030 vs. Swiss-Prot
Match: RPB11_DROME (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-26
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           YK+PHPL++K ++RI TT+  SP +A+  AI DL  EL   +  F+
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106

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BLAST of Cucsa.249030 vs. TrEMBL
Match: A0A0A0LCD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G690810 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Cucsa.249030 vs. TrEMBL
Match: A0A0S3SEX6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G262400 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.9e-57
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD NVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQ+INDLD+ELDHLKNAFEAE  KFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKNAFEAEMLKFSRDY 116

[Close]

BLAST of Cucsa.249030 vs. TrEMBL
Match: V7AD36_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G010100g PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.6e-57
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD NVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKII+RIHTTSQSSPMQAYNQ+INDLD+ELDHLKNAFEAE  KFSRDY
Sbjct: 61  YKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDRELDHLKNAFEAEMLKFSRDY 116

[Close]

BLAST of Cucsa.249030 vs. TrEMBL
Match: A0A0B2PRM0_GLYSO (DNA-directed RNA polymerase II subunit RPB11 OS=Glycine soja GN=glysoja_006143 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-56
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD NVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQ+INDLD+ELDHLK+AFEAE  KFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKSAFEAEMLKFSRDY 116

[Close]

BLAST of Cucsa.249030 vs. TrEMBL
Match: I1L5M8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G228500 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-56
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD NVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQ+INDLD+ELDHLK+AFEAE  KFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKSAFEAEMLKFSRDY 116

[Close]

BLAST of Cucsa.249030 vs. TAIR10
Match: AT3G52090.2 (AT3G52090.2 DNA-directed RNA polymerase, RBP11-like)

HSP 1 Score: 199.9 bits (507), Expect = 8.6e-52
Identity = 103/146 (70.55%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVR------------------------------IHTTSQSSPMQAYNQA 117
           Y+LPHPL+YKIIVR                              IHTTSQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

[Close]

BLAST of Cucsa.249030 vs. NCBI nr
Match: gi|449464004|ref|XP_004149719.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of Cucsa.249030 vs. NCBI nr
Match: gi|659123727|ref|XP_008461807.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 9.0e-59
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of Cucsa.249030 vs. NCBI nr
Match: gi|1012034998|ref|XP_015952950.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Arachis duranensis])

HSP 1 Score: 231.1 bits (588), Expect = 9.9e-58
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHLKNAFEAE  KFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEAEMVKFSRDY 116

[Close]

BLAST of Cucsa.249030 vs. NCBI nr
Match: gi|1009105386|ref|XP_015884348.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Ziziphus jujuba])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE E AKFSR+Y
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFETEIAKFSREY 116

[Close]

BLAST of Cucsa.249030 vs. NCBI nr
Match: gi|1009170153|ref|XP_015866049.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Ziziphus jujuba])

HSP 1 Score: 228.8 bits (582), Expect = 4.9e-57
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLH+DENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHKDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE E AKFSR+Y
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFETEIAKFSREY 116

The following BLAST results are available for this feature:

BLAST of Cucsa.249030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPBB_ARATH	2.7e-55	88.79	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=...	[more]
RPB11_DICDI	2.4e-27	47.75	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr...	[more]
RPB11_MOUSE	1.5e-26	52.38	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=1 SV=1	[more]
RPB11_HUMAN	1.5e-26	52.38	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV...	[more]
RPB11_DROME	1.5e-26	52.83	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11...	[more]

BLAST of Cucsa.249030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCD5_CUCSA	1.3e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G690810 PE=4 SV=1	[more]
A0A0S3SEX6_PHAAN	5.9e-57	95.69	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G262400 PE=...	[more]
V7AD36_PHAVU	7.6e-57	94.83	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G010100g PE=4 SV=1	[more]
A0A0B2PRM0_GLYSO	2.2e-56	94.83	DNA-directed RNA polymerase II subunit RPB11 OS=Glycine soja GN=glysoja_006143 P...	[more]
I1L5M8_SOYBN	2.2e-56	94.83	Uncharacterized protein OS=Glycine max GN=GLYMA_09G228500 PE=4 SV=1	[more]

BLAST of Cucsa.249030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52090.2	8.6e-52	70.55	DNA-directed RNA polymerase, RBP11-like	[more]

BLAST of Cucsa.249030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464004\|ref\|XP_004149719.1\|	1.8e-59	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis sativus...	[more]
gi\|659123727\|ref\|XP_008461807.1\|	9.0e-59	99.14	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]
gi\|1012034998\|ref\|XP_015952950.1\|	9.9e-58	96.55	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Arachis duranen...	[more]
gi\|1009105386\|ref\|XP_015884348.1\|	2.2e-57	95.69	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Ziziphus jujuba...	[more]
gi\|1009170153\|ref\|XP_015866049.1\|	4.9e-57	94.83	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Ziziphus j...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008193	RNA_pol_Rpb11_13-16kDa_CS
IPR009025	RBP11-like_dimer
IPR008193	RNA_pol_Rpb11_13-16kDa_CS
IPR009025	RBP11-like_dimer

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0046983	protein dimerization activity
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.249030.2	Cucsa.249030.2	mRNA
Cucsa.249030.1	Cucsa.249030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66 scor
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 1..112 score: 1.57
None	No IPR available	unknown	Coil	Coil	coord: 84..111 scor
None	No IPR available	GENE3D	G3DSA:3.30.1360.10		coord: 1..114 score: 4.5
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..116 score: 5.5
None	No IPR available	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.249030	Cla017274	Watermelon (97103) v1	cgywmB466
Cucsa.249030	Csa3G690810	Cucumber (Chinese Long) v2	cgycuB356
Cucsa.249030	MELO3C023983	Melon (DHL92) v3.5.1	cgymeB420
Cucsa.249030	ClCG10G012300	Watermelon (Charleston Gray)	cgywcgB436
Cucsa.249030	CSPI03G29630	Wild cucumber (PI 183967)	cgycpiB372
Cucsa.249030	CmaCh14G009970	Cucurbita maxima (Rimu)	cgycmaB0692
Cucsa.249030	CmaCh01G002310	Cucurbita maxima (Rimu)	cgycmaB0693
Cucsa.249030	CmoCh14G010140	Cucurbita moschata (Rifu)	cgycmoB0692
Cucsa.249030	Lsi03G012030	Bottle gourd (USVL1VR-Ls)	cgylsiB407
Cucsa.249030	Cp4.1LG02g15620	Cucurbita pepo (Zucchini)	cgycpeB0659
Cucsa.249030	Cp4.1LG03g04610	Cucurbita pepo (Zucchini)	cgycpeB0660
Cucsa.249030	MELO3C023983.2	Melon (DHL92) v3.6.1	cgymedB415
Cucsa.249030	CsaV3_3G032080	Cucumber (Chinese Long) v3	cgycucB378
Cucsa.249030	Bhi11G001173	Wax gourd	cgywgoB497
Cucsa.249030	Carg11216	Silver-seed gourd	carcgyB0933

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.249030	Cucurbita moschata (Rifu)	cgycmoB0693
Cucsa.249030	Silver-seed gourd	carcgyB0864
Cucsa.249030	Watermelon (97103) v2	cgywmbB438