Carg11216 (gene) Silver-seed gourd

Overview
NameCarg11216
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed RNA polymerase II subunit RPB11
LocationCucurbita_argyrosperma_scaffold_013 : 648971 .. 652822 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAAATTAAGACAAAACCCTGAGTTTCTTTCGTCTTCTCCATCTTCCTCTCTCGGGCAGCTTCCATTACTGCAAAAACCACACCTCCAACAGCTTCACAAGGACTCCTAAAGCCATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGTAATTTCACAAACTCTTCCCCCTTTCTCTAACCACTGCAATTTTATCTGTCTCTCACGTTTTCTTCCCCGCTTTTTTGTGATCTTTTCTTCTCCAGGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAGGGAGGAACATACAATTGGAAACATCTTGCGAATGTATGACCCTTTTTTGAAAATTTTGAAATTACTGTTTGAAAAGTGAAGTGTTCGGTTTTTATTGGTTTTTTTTTTTATATAAGCAGGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCCGGGTCAGTTCATTTTCCTCTTATTTTGGGGTTTTCTCATTCTGATTAGGGTTTAATGGAGCTTTTAATTTGTGGGTTTTATCCCTTTTACTTTGGTGTTTGTTTTGATCTTGAAGGTTCTGTATTGATTTAGCTGTTGAATTTGGTAGTAGATGGTTTTAAGTTCTGATTATTACTCTCTAATGAAGGTTAAATTAACACTTGCTGAGTCTTGTGCTATTCTTATGAGCCTAAATGAGATAGTTTTGGTTCTAAAGAGTCGAAACTCAAGCTAAAGGCAATGCAACTCGGCTTCCCGTTGCCTATTGTCATTAGGATTGTGTAATGAACATTATTAAGATATTAAAAGCACATTAGCAATTAGCCATTGAGCTTGTTATTAGGAGTTTGCCATAAAGAGAGGGGCTGGGGAGGAAGGAGGCAAAGATTTGGCTTGCTTAGGCTTGGGTGAGTGTAACAACCCAAGCACACCGCTAGCAGATATTGTCATCTTTGGGCCTTCCCTTCCAAGCTTCCCCTCAAGGATTTAAAACGCACTGCTAAGGAGAGGTTTCCACACCCTTATAAAGGATGTTTCATTCTCCTCCCCAACCGAAGGGGGTGGATTTGGTGGAGGGCCCCACATTGATTGGAGAAAGGAACGAGTATCAGCGAGTACGCTGGGCCCAAAAGGGGGTGGATTCAATTGGGGAGGAGAACGAAATACCCTTTACAAGGGTGTGGAAATCTTTCCCTAATAGATGCGCTTTAAAAACCTCGAGGGTAAGCTTGAAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTAGGCTTGAGCTGCTACAGTCAGAGTATTCAAGAAGGGAGGTCCCAGGTACATTGAAGCAAGCTCTTAAATTCTTTCGAGTAACCCAAATATGCTTGTGTTGCAAAGATGTAATTCCAAGTACCTCTAGTTTTCGATACGGTTTGTTCATGTTATTCGAAACCATTAGGATATCAAAAGCTGGAAAACAAGAAATGAAGTTATTGAACTTCTGGGTTTTTGTTCTTTGTAGTAGTGCTTTTTTTTCTTTTTATCAAGTTAATCTTCTTCGTGCTAGGCTCGCTACTTATAATCTTCCTATCGAAAAATATTTGGTATTTATATTGGTCGTGCTGAATATTACCTATCATTGGAATTGACCTGTCTATGGTCCGTTACACGTTGCACATACACAAGTGATGGTGGAACCTGAAGTTGGTTTATTCTCTTGAATGCTTCTCATTAGGAGTATCCTTTAAGCAAGGAAACACTATCTAGTCCATCCACCTTATATGTTTGATGGGGTGTTTTATAATATAGTGTTTAAATGATTTAATATTGCTCTAAGAATCCTCGGACTTGCCCGTTTCTTACCTCCATATAAATACGCCTTTACGTTCTTGGATCCATTCGTGACGGTTTAGTGATTAATTGTTTAAGTTTAACTTGACGCGACTTTACTTGTCATGGTTTAGTTATAATTTTTTAGTGAATTACAAACTGGATGGTTATCGCCCTTCTCGATATTCTAGTTTGAAAAGTGCACTTGTATATGATACACCCCCATAAGCTGAAGTTGCATTTGAATGAAGTATTTTTTGAAATTTCTCTCTTAAACATCCGAAGAACGGATTATTTTCTTTATACCGTCCTGTATCAATTTTGTTGGGTTGATATGTATATCAAAACAAACATGAAAAGGTGTGTTAATGCTTTAGGCATGTGGTTGGCGAGAGACTTGCACGTTTTTATTTTACAGTTTTCCTGTTGGGTCGATATGTATATATTTAGCGTTATCTTTCATAAACTGATTATTACTGTTCTTCAGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGTTTGAATTTGCTACTCTCTCTAAACTTAGTTTGAAGATAGAACATGCAATCTTTAACTAATAAATACTCGCAGTGAAAAGTAAAGTGCTGTTGAAATTGATAGCAAATCTAAGGTTAGAAATGATAGTGAGTTGGACAACTTCATTAGAGAAACCAAAAATCGATTCAAATGTGTGATGTCCCACTTTGGTTGGGGAGAACAAACCACCCTTATAAGGGTGTGAAAACCTTCCCCTAGCAGACGTATTTTAAAGCCCGAAAGGGAAAGCCCAAAGAGAACAATATCTACTAGCAATGAATCTGGGCTGTTACAAATGGTATCAGAGCCAGACACTGAACAATGTGCCAACCTTCTCACTGTTTCCTGAAGGAGGGTAGACACGAGGAGGTGTGCCGGTAGGGACACTGGGCCCCAAAGAAGGGTGGATTTGGTGCGAGTCCCACATCGATTGGAGAAAGGACGCTGGCCCAAAGGGTGGTGGATTGTGATGTCCCACCTTGGTTGGGGAGGAGAACAAAAGACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAAACACGTTTTAAAGCCTTGAGGGGAAGCTTGAAAGGGAAAGCCCGAAGAGGACAATATTTGCTAGCGGTGAGTCTGGGTCGTTACAAAATGGCTTTGGAGCTGCACATTTTTGGACTTCTAAAAAAGTAGGTACTTGGAACTGAGACGTAAAAGCTTTGAAACTGTCCTTAAAAACACTGTAAATCTCCTGACTACTTTGTAAGAAAAACCAAAGGTCGAACCAAAAACTGATTCTAAGGAGCTGCAACTTTTCGGACTTTTCAAGGTTAGGTACTTGAAACTGAGACATAAAAGCTTAGAAACTGTTGTTAAAAACACTGTAAACCTCCCGACCCGACTACTTCGTAACAAAAACCAAAAGTCGAATAAAAAACTGATTCGAATTGCTTTCGGAGCTGCAACTTTTCGGACCTTTCAAAGTTAGGGACTTGAAACTCAGACGTAAATGCTAAGAAACGGTTCTTAAAACCATTGTAAATCTCCCGACTACTTCGTAAGAAAAACCAAAAGTCGAACCAAAAATTGATTCAAATTGCTTTTGGAGCTGCAACTTTCCGGACCTTTCAAAGTTAGGGACTTGAAACCGAGACATAAAAGCTTTGAAACTTCTTTCTTGCAGGCTGAGTTCGCAAAGTTCTCAAGGGACTATTGATTTGGCTTTGAAAAAAAAACTTGGTGGAGCTCAGTTCAAGATGCAGACACAAGACAATTGGTAGCTGACATGAAATGTATTTCCAACAACTTTGCTTTGTTTTCTTTAAGGTTGCTGAAACCATCTTGTAACTTTGCTAAACTATTTTTGGTATGAGACTATGCATTTAAATTATATATATATATATATATATA

mRNA sequence

AAGGAAATTAAGACAAAACCCTGAGTTTCTTTCGTCTTCTCCATCTTCCTCTCTCGGGCAGCTTCCATTACTGCAAAAACCACACCTCCAACAGCTTCACAAGGACTCCTAAAGCCATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAGGGAGGAACATACAATTGGAAACATCTTGCGAATGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCCGGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGCTGAGTTCGCAAAGTTCTCAAGGGACTATTGATTTGGCTTTGAAAAAAAAACTTGGTGGAGCTCAGTTCAAGATGCAGACACAAGACAATTGGTAGCTGACATGAAATGTATTTCCAACAACTTTGCTTTGTTTTCTTTAAGGTTGCTGAAACCATCTTGTAACTTTGCTAAACTATTTTTGGTATGAGACTATGCATTTAAATTATATATATATATATATATATA

Coding sequence (CDS)

ATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAGGGAGGAACATACAATTGGAAACATCTTGCGAATGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCCGGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGCTGAGTTCGCAAAGTTCTCAAGGGACTATTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY
Homology
[Close]
BLAST of Carg11216 vs. NCBI nr
Match: XP_022935017.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita moschata] >XP_022982567.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita maxima] >XP_023527827.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 7.8e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 116

[Close]
BLAST of Carg11216 vs. NCBI nr
Match: XP_004149719.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis sativus] >XP_011651771.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis sativus] >KGN58584.1 hypothetical protein Csa_3G690810 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 9.5e-57
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]
BLAST of Carg11216 vs. NCBI nr
Match: XP_022152550.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia])

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPLKYKIIIRIHT SQSSPMQAYNQAINDLDKELDHLKNA EAE AKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]
BLAST of Carg11216 vs. NCBI nr
Match: XP_022949378.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_023525451.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.6 bits (579), Expect = 2.1e-56
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELDHL+N  EAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]
BLAST of Carg11216 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 4.7e-56
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]
BLAST of Carg11216 vs. TAIR10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like)

HSP 1 Score: 194.9 bits (494), Expect = 2.8e-50
Identity = 100/146 (68.49%), Postives = 109/146 (74.66%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIR------------------------------IHTASQSSPMQAYNQA 117
           Y+LPHPLKYKII+R                              IHT SQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

[Close]
BLAST of Carg11216 vs. Swiss-Prot
Match: sp|Q38859|NRPBB_ARATH (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.8e-54
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           Y+LPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELD+LKN  EAE AKFS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]
BLAST of Carg11216 vs. Swiss-Prot
Match: sp|Q86JJ5|RPB11_DICDI (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-26
Identity = 52/111 (46.85%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ F I +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAK 112
           Y++PHPL++ + IRI T + ++P++   +++  L +E   L+N+   +  K
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQK 111

[Close]
BLAST of Carg11216 vs. Swiss-Prot
Match: sp|Q9VJE4|RPB11_DROME (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 1  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
          MNAP  +E F++ EG KK+  E DTK+ NAA F I +E+HT+GN++R QL +D NVLFAG
Sbjct: 1  MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61 YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKEL 99
          YK+PHPL++K +IRI T +  SP +A+  AI DL  EL
Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAEL 98

[Close]
BLAST of Carg11216 vs. Swiss-Prot
Match: sp|Q32P79|RPB11_BOVIN (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-25
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLK 103
           YK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  L+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]
BLAST of Carg11216 vs. Swiss-Prot
Match: sp|P52435|RPB11_HUMAN (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-25
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLK 103
           YK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  L+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]
BLAST of Carg11216 vs. TrEMBL
Match: tr|A0A0A0LCD5|A0A0A0LCD5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.3e-57
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]
BLAST of Carg11216 vs. TrEMBL
Match: tr|A0A1S3CG10|A0A1S3CG10_CUCME (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=LOC103500319 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.1e-56
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]
BLAST of Carg11216 vs. TrEMBL
Match: tr|A0A2C9VHF2|A0A2C9VHF2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G007100 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.1e-56
Identity = 108/116 (93.10%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF +ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKE DHLKNA EAE AKFSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKEFDHLKNAFEAELAKFSRDY 116

[Close]
BLAST of Carg11216 vs. TrEMBL
Match: tr|A0A1S5R4J3|A0A1S5R4J3_HEVBR (DNA-directed RNA polymerase OS=Hevea brasiliensis subsp. brasiliensis OX=187338 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.6e-55
Identity = 107/116 (92.24%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF +ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDHLKNA EAE AKFS+DY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSQDY 116

[Close]
BLAST of Carg11216 vs. TrEMBL
Match: tr|A0A1R3KCX2|A0A1R3KCX2_COCAP (DNA-directed RNA polymerase, RBP11-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02093 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-54
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 0 

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY 117
           YKLPHPL+YKII+RIHT SQSSPMQAYNQAI+DLDKELDHLKNA EAE AK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAISDLDKELDHLKNAFEAEVAKHSRDY 116

The following BLAST results are available for this feature:
BLAST of Carg11216 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935017.17.8e-59100.00DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita moschata] >... [more]
XP_004149719.19.5e-5795.69PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis sativus... [more]
XP_022152550.11.2e-5696.55DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia][more]
XP_022949378.12.1e-5694.83DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_02... [more]
XP_008461807.14.7e-5694.83PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo][more]
BLAST of Carg11216 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52090.22.8e-5068.49DNA-directed RNA polymerase, RBP11-like[more]
BLAST of Carg11216 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q38859|NRPBB_ARATH8.8e-5486.21DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=... [more]
sp|Q86JJ5|RPB11_DICDI7.7e-2646.85DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468... [more]
sp|Q9VJE4|RPB11_DROME5.0e-2555.10DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ... [more]
sp|Q32P79|RPB11_BOVIN8.5e-2551.96DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=... [more]
sp|P52435|RPB11_HUMAN8.5e-2551.96DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J... [more]
BLAST of Carg11216 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCD5|A0A0A0LCD5_CUCSA6.3e-5795.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=4 SV=1[more]
tr|A0A1S3CG10|A0A1S3CG10_CUCME3.1e-5694.83DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A2C9VHF2|A0A2C9VHF2_MANES9.1e-5693.10Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G007100 PE=4 SV=... [more]
tr|A0A1S5R4J3|A0A1S5R4J3_HEVBR2.6e-5592.24DNA-directed RNA polymerase OS=Hevea brasiliensis subsp. brasiliensis OX=187338 ... [more]
tr|A0A1R3KCX2|A0A1R3KCX2_COCAP2.2e-5492.24DNA-directed RNA polymerase, RBP11-like protein OS=Corchorus capsularis OX=21014... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0001055RNA polymerase II activity
GO:0003899DNA-directed RNA polymerase activity
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005665DNA-directed RNA polymerase II, core complex
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR037685RBP11
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR009025RBP11-like_dimer
IPR036603RBP11-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0005730 nucleolus
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0001055 RNA polymerase II activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11216-RACarg11216-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..111
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 1..107
NoneNo IPR availablePANTHERPTHR13946:SF16DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11-A-RELATEDcoord: 1..107
IPR036603RNA polymerase, RBP11-like subunitGENE3DG3DSA:3.30.1360.10coord: 1..115
e-value: 8.3E-45
score: 153.0
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILYSSF55257RBP11-like subunits of RNA polymerasecoord: 1..112
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 31..103
e-value: 8.2E-24
score: 83.1
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 35..66
IPR037685RNA polymerase RBP11CDDcd06926RNAP_II_RPB11coord: 13..105
e-value: 7.76899E-46
score: 144.657

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11216Cla017274Watermelon (97103) v1carwmB0816
Carg11216Csa3G690810Cucumber (Chinese Long) v2carcuB0829
Carg11216MELO3C023983Melon (DHL92) v3.5.1carmeB0811
Carg11216MELO3C023562Melon (DHL92) v3.5.1carmeB0809
Carg11216ClCG10G012300Watermelon (Charleston Gray)carwcgB0792
Carg11216CSPI03G29630Wild cucumber (PI 183967)carcpiB0850
Carg11216Cucsa.249030Cucumber (Gy14) v1carcgyB0933
Carg11216CmaCh01G002310Cucurbita maxima (Rimu)carcmaB1134
Carg11216CmaCh08G005190Cucurbita maxima (Rimu)carcmaB1136
Carg11216CmaCh14G009970Cucurbita maxima (Rimu)carcmaB1132
Carg11216CmoCh08G005100Cucurbita moschata (Rifu)carcmoB1107
Carg11216CmoCh01G002420Cucurbita moschata (Rifu)carcmoB1105
Carg11216CmoCh14G010140Cucurbita moschata (Rifu)carcmoB1102
Carg11216Lsi02G025620Bottle gourd (USVL1VR-Ls)carlsiB747
Carg11216Lsi03G012030Bottle gourd (USVL1VR-Ls)carlsiB748
Carg11216Cp4.1LG17g08110Cucurbita pepo (Zucchini)carcpeB1145
Carg11216Cp4.1LG03g04610Cucurbita pepo (Zucchini)carcpeB1147
Carg11216Cp4.1LG02g15620Cucurbita pepo (Zucchini)carcpeB1146
Carg11216CsGy3G027450Cucumber (Gy14) v2carcgybB0802
Carg11216CsGy7G017490Cucumber (Gy14) v2carcgybB0808
Carg11216MELO3C023983.2Melon (DHL92) v3.6.1carmedB0822
Carg11216MELO3C023562.2Melon (DHL92) v3.6.1carmedB0820
Carg11216CsaV3_3G032080Cucumber (Chinese Long) v3carcucB0853
Carg11216Cla97C10G195120Watermelon (97103) v2carwmbB0851
Carg11216Bhi11G001173Wax gourdcarwgoB0951
Carg11216Bhi09G000544Wax gourdcarwgoB0954
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11216Carg13434Silver-seed gourdcarcarB454
Carg11216Carg07328Silver-seed gourdcarcarB605
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11216Cucurbita maxima (Rimu)carcmaB1133
Carg11216Watermelon (Charleston Gray)carwcgB0791
Carg11216Watermelon (97103) v2carwmbB0852