Cucsa.244670 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.244670
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein LINE-1
Locationscaffold02135 : 536889 .. 539479 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAATTCAACTCCCTTATTGATCCTCCTCTTACAAATGCAAAATTCACCTGCTCCAATCTCAGAACTAATCCAACTCTATCAAGGCTAGATAGATTTCTTTACACCTGGGAATGGGAATCAAATTTTTTCACTTATTTTTCGAAATCCCTATCTAGAATTACTTCAGACCACTTCCCCGTTCTCCTGGAAACATCAAACTTGATGTTGGGGACCTGTTCCATTCAAGTTCACAAATGCATATTTTCTAGAGCCTGAATTTAGAAAACATATTGATCTATGGTGGAAAGATACTAGCCAACAAGCACACCCTGGATATTCTTTCATGAGGAGACTCGGACAACTCTCTTTCAAAATAAAACAATGGGGAAAAAaCATAAGGATGTTGATGAAATTTCAAAAAGAATATGGATGTAGAAAATTGATGACATTGATAAATTAGAAGCAGAAAACAACATCACAGAGATTGATAGCCTCCGTAGAACAGCCTTAAAAGCTGACCTCAGTCAGCTTACACATAAAGAATATCAAATCTGGGCTAAAAAATGCAAGAGGTTGTGGAACACTGATGGGGATGAAAATACAACATACTTTCAAAGAATTTGCACAGCCAAACAAAGAAGGACCATTATTTCCAATATCATAAACGAGGATGGAGTAAATTGCTCTATTAATGATGATATTCAGAAAGCTTTCATCAGCTACTTCGAAGACATCTACACAAAGACAGAACAAGAATCAATGTCCATAGATAACCTCGATTAGTCTCCTATTACAAACTCTTCGAAAACATCAATCTGTCTACAGTTCAACGAACAAGAAATATGGAATTGTCTCAAATCTTTTGAGAATAACAAAGCCCCAGGGCCACACGGATTCACCATGGAATTTCTGAAAAAGACGTGGAGGTATACAAAAGTGGATATATTGAACATTTTCAGGGATTTCCACACAAATGGCATCATAAATAAAGCGGTCAATGAAACTTATATTGTCCTTGTTGCAAAAAAGGAAAAaTGCACAAAGACTTCCGACTACAGGCCGATTAGCCTTACTACTGTTGTATACAAACTGATTGCCAAAGTCCTAGCTGAAAGACTGAAAGCCACCCTCCCACACACTGTATCAGAAAACCAGATGCCTTTTGTAAAGGGTAGACAGATCACTAATGCCATTCTCATTGCTAATGAAGCGACTGACTATTGGAGAATGAAAAAGGCCAAAGGATTCATCATCAAACTTGACATAGAGAAGGCATTGATAAAATTAGTTGGAAATTCATGCTTTTGAAAAAAAAaCTTACCTTCTACATGGAGAAAGTGGATGAAATCTTGTATTTCCAACATCACATATTCAGTAATCATCAATGGAAAACGTAGAGGAAGAATTCATCCAAATAGAGGCATTAGACAAGGGGACCCAATCTCGCCTTTCTATTTGTGATTGCCATGGACTATCTTAGCAGAATACTCAAACATCTTGAGAATACTGAAAAATCAAAGGAGTTGTTATAAATGGGGATCTCAACTTAACAAATCTGCTTTTTGCCGATGACATTCTTCTTTTTGTCGAAGATAATGATGTATCTATAAAAAATCTTCAATACGCTTTACATCTCTTTGAAATAGCCACTGGGCTAAACATCAATAAAAACAAATCCAACATCATCCCGATAAATGTTGATACAGATAGAGATGATGTCATCACAATAAATTGGGGTATCAATTTACAATTCTTCCCTATTCCTTATCTTGGTGTGCTGTTGGGAGGTAAACCATCATCTTCGTATTTCTGGACTGATACAACCAAAAAAATCCACAAAAAACTCAACAATTGGAAGTACTCATATATCTCGAAAGGGGGAAAAATCACTCTCATCAACTCATCTCTTACTAGTCTCCCCACATACAAGCTCTCTATCTTCAAAGCTTCTGTTGGCATATGCAAAAAAATTGAGCAACACTGGAGGAATTTTTTATGGCAAAACTTCACAGGGGGACAGAAATATACATCTCCTAAGATGGTAAAAAaTCACAGCCCCTATAAAAAAaGGTGGACTGGGAATATGTCGAGTCGCGGATACAAATTTTGCATTACTTACAAAATGGTTTTGGAGGTTTGTCAATGAGCAGAAGCCTCTCTGGAAGAGAATTATAATTGCAAAATATGATAGAGAGTGCATTAGTGGGATCCCGACATTGAGTAAATATAGCAATAGCAAGTCACCATGGAACTCGATTATCAAAGGTGTGGACTGGTTCTTTGCTCATACCAAATGGAAAATAAAAAATGGAGAAAATACCTCATTCTGGCATGGATTATGGACAGATATATCTCCTCTTTCTCTCTATAAACCCATACTATATGCTTTATCAACTTTACAGCATGACAGTGTCAAGAACTTTTGGAACCAAAATACCAATGATTGGGACCTTCGAAGGACCCTTAGAAGCATGGAAATCCAACAGTGGTCTGAAATAAAACCTATCTTAAGTCCCCCAAACATCAATCTGGGATTTGACAAACCACTCTGGCAACTTTGCAACAGCGGAAATTTTAGTGTTGCATCTATTAAAAAAGCTATACAT

mRNA sequence

atgaaaaaattcaactcccttattgatcctcctcttacaaatgcaaaattcacctgctccaatctcagaactaatccaactctatcaaggctagatagatttctttacacctgggaatgggaatcaaattttttcacttatttttcgaaatccctatctagaattacttcagaccacttccccgttctcctggaaacatcaaacttgatgttggggacctgttccattcaatctcctattacaaactcttcgaaaacatcaatctgtctacagttcaacgaacaagaaatatggaattgtctcaaatcttttgagaataacaaagccccagggccacacggattcaccatggaatttctgaaaaagacgtggaggtatacaaaagtggatatattgaacattttcagggatttccacacaaatggcatcataaataaagcggtcaatgaaacttatattgtccttgttgcaaaaaaggaaaaatgcacaaagacttccgactacaggccgattagccttactactgttgtatacaaactgattgccaaagtcctagctgaaagactgaaagccaccctcccacacactgtatcagaaaaccagatgccttttgtaaagggagttgttataaatggggatctcaacttaacaaatctgctttttgccgatgacattcttctttttgtcgaagataatgatgtatctataaaaaatcttcaatacgctttacatctctttgaaatagccactgggctaaacatcaataaaaacaaatccaacatcatcccgataaatgttgatacagatagagatgatgtcatcacaataaattggggtatcaatttacaattcttccctattccttatcttggtgtgctgttgggaggtaaaccatcatcttcgtatttctggactgatacaaccaaaaaaatccacaaaaaactcaacaattggaagtactcatatatctcgaaagggggaaaaatcactctcatcaactcatctcttactagtctccccacatacaagctctctatcttcaaagcttctgttggcatatgcaaaaaaattgagcaacactggaggaattttttatggcaaaacttcacagggggacagaaatatacatctcctaagatgaagcctctctggaagagaattataattgcaaaatatgatagagagtgcattagtgggatcccgacattgagtaaatatagcaatagcaagtcaccatggaactcgattatcaaaggtgtggactggttctttgctcataccaaatggaaaataaaaaatggagaaaatacctcattctggcatggattatggacagatatatctcctctttctctctataaacccatactatatgctttatcaactttacagcatgacagtgtcaagaacttttggaaccaaaataccaatgattgggaccttcgaaggacccttagaagcatggaaatccaacagtggtctgaaataaaacctatcttaagtcccccaaacatcaatctgggatttgacaaaccactctggcaactttgcaacagcggaaattttagtgttgcatctattaaaaaagctatacat

Coding sequence (CDS)

ATGAAAAAATTCAACTCCCTTATTGATCCTCCTCTTACAAATGCAAAATTCACCTGCTCCAATCTCAGAACTAATCCAACTCTATCAAGGCTAGATAGATTTCTTTACACCTGGGAATGGGAATCAAATTTTTTCACTTATTTTTCGAAATCCCTATCTAGAATTACTTCAGACCACTTCCCCGTTCTCCTGGAAACATCAAACTTGATGTTGGGGACCTGTTCCATTCAATCTCCTATTACAAACTCTTCGAAAACATCAATCTGTCTACAGTTCAACGAACAAGAAATATGGAATTGTCTCAAATCTTTTGAGAATAACAAAGCCCCAGGGCCACACGGATTCACCATGGAATTTCTGAAAAAGACGTGGAGGTATACAAAAGTGGATATATTGAACATTTTCAGGGATTTCCACACAAATGGCATCATAAATAAAGCGGTCAATGAAACTTATATTGTCCTTGTTGCAAAAAAGGAAAAaTGCACAAAGACTTCCGACTACAGGCCGATTAGCCTTACTACTGTTGTATACAAACTGATTGCCAAAGTCCTAGCTGAAAGACTGAAAGCCACCCTCCCACACACTGTATCAGAAAACCAGATGCCTTTTGTAAAGGGAGTTGTTATAAATGGGGATCTCAACTTAACAAATCTGCTTTTTGCCGATGACATTCTTCTTTTTGTCGAAGATAATGATGTATCTATAAAAAATCTTCAATACGCTTTACATCTCTTTGAAATAGCCACTGGGCTAAACATCAATAAAAACAAATCCAACATCATCCCGATAAATGTTGATACAGATAGAGATGATGTCATCACAATAAATTGGGGTATCAATTTACAATTCTTCCCTATTCCTTATCTTGGTGTGCTGTTGGGAGGTAAACCATCATCTTCGTATTTCTGGACTGATACAACCAAAAAAATCCACAAAAAACTCAACAATTGGAAGTACTCATATATCTCGAAAGGGGGAAAAATCACTCTCATCAACTCATCTCTTACTAGTCTCCCCACATACAAGCTCTCTATCTTCAAAGCTTCTGTTGGCATATGCAAAAAAATTGAGCAACACTGGAGGAATTTTTTATGGCAAAACTTCACAGGGGGACAGAAATATACATCTCCTAAGATGAAGCCTCTCTGGAAGAGAATTATAATTGCAAAATATGATAGAGAGTGCATTAGTGGGATCCCGACATTGAGTAAATATAGCAATAGCAAGTCACCATGGAACTCGATTATCAAAGGTGTGGACTGGTTCTTTGCTCATACCAAATGGAAAATAAAAAATGGAGAAAATACCTCATTCTGGCATGGATTATGGACAGATATATCTCCTCTTTCTCTCTATAAACCCATACTATATGCTTTATCAACTTTACAGCATGACAGTGTCAAGAACTTTTGGAACCAAAATACCAATGATTGGGACCTTCGAAGGACCCTTAGAAGCATGGAAATCCAACAGTGGTCTGAAATAAAACCTATCTTAAGTCCCCCAAACATCAATCTGGGATTTGACAAACCACTCTGGCAACTTTGCAACAGCGGAAATTTTAGTGTTGCATCTATTAAAAAAGCTATACAT

Protein sequence

MKKFNSLIDPPLTNAKFTCSNLRTNPTLSRLDRFLYTWEWESNFFTYFSKSLSRITSDHFPVLLETSNLMLGTCSIQSPITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRDFHTNGIINKAVNETYIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSENQMPFVKGVVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAKYDRECISGIPTLSKYSNSKSPWNSIIKGVDWFFAHTKWKIKNGENTSFWHGLWTDISPLSLYKPILYALSTLQHDSVKNFWNQNTNDWDLRRTLRSMEIQQWSEIKPILSPPNINLGFDKPLWQLCNSGNFSVASIKKAIH
Homology
[Close]
BLAST of Cucsa.244670 vs. Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-10
Identity = 54/203 (26.60%), Postives = 93/203 (45.81%), Query Frame = 1 

Query: 93  NEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRDFHTNGIINKAVNETY 152
           +  EI + +++    K+PGP GFT EF +         +LN+F++    GI+     E  
Sbjct: 453 SSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEAN 512

Query: 153 IVLVAKKEK-CTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSENQMPFVKG---- 212
           I L+ K  K  T+  +YRPISL  +  K++ K+L  R++  +   +  +Q+ F+ G    
Sbjct: 513 ITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGW 572

Query: 213 VVINGDLNL---TNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSNIIPI 272
             I   +N+    N L   D ++   D + +  N+Q   H F I T   I    + +  I
Sbjct: 573 FNIRKSINVIQHINKLKNKDHMILSIDAEKAFDNIQ---HPFMIRTLKKIGIEGTFLKLI 632

Query: 273 NVDTDRDDVITINWGINLQFFPI 288
                +     I  G+ L+ FP+
Sbjct: 633 EAIYSKPTANIILNGVKLKSFPL 652

[Close]
BLAST of Cucsa.244670 vs. Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.2e-10
Identity = 40/135 (29.63%), Postives = 67/135 (49.63%), Query Frame = 1 

Query: 75  SIQSPITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNI 134
           S+  PIT S            EI   + S    K+PGP GFT EF ++        +L +
Sbjct: 448 SLNRPITGS------------EIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKL 507

Query: 135 FRDFHTNGIINKAVNETYIVLVAKKEK-CTKTSDYRPISLTTVVYKLIAKVLAERLKATL 194
           F+     GI+  +  E  I+L+ K  +  TK  ++RPISL  +  K++ K+LA R++  +
Sbjct: 508 FQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHI 567

Query: 195 PHTVSENQMPFVKGV 209
              +  +Q+ F+ G+
Sbjct: 568 KKLIHHDQVGFIPGM 570


HSP 2 Score: 51.2 bits (121), Expect = 4.0e-05
Identity = 47/207 (22.71%), Postives = 89/207 (43.00%), Query Frame = 1 

Query: 164 KTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSENQMPFVKGVVINGDLNLTNLLFAD 223
           KT   +   L+ +++ ++ +VLA  ++          Q   +KG+ + G   +   LFAD
Sbjct: 654 KTGTRQGCPLSPLLFNIVLEVLARAIR----------QEKEIKGIQL-GKEEVKLSLFAD 713

Query: 224 DILLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQ 283
           D+++++E+  VS +NL   +  F   +G  IN  KS     N +   +  I       + 
Sbjct: 714 DMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIA 773

Query: 284 FFPIPYLGVLL--GGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPT 343
              I YLG+ L    K      +    K+I +  N WK    S  G+I ++  ++     
Sbjct: 774 SKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVI 833

Query: 344 YKLSI--FKASVGICKKIEQHWRNFLW 367
           Y+ +    K  +    ++E+    F+W
Sbjct: 834 YRFNAIPIKLPMTFFTELEKTTLKFIW 849

[Close]
BLAST of Cucsa.244670 vs. Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-08
Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 95  QEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILN-IFRDFHTNGIINKAVNETYI 154
           +EI   + S    K+PGP GF+ EF + T++   + IL+ +F      G +  +  E  I
Sbjct: 463 KEIEAVINSLPTKKSPGPDGFSAEFYQ-TFKEDLIPILHKLFHKIEVEGTLPNSFYEATI 522

Query: 155 VLVAKKEKC-TKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSENQMPFVKGV 209
            L+ K +K  TK  ++RPISL  +  K++ K+LA R++  +   +  +Q+ F+ G+
Sbjct: 523 TLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGM 577

[Close]
BLAST of Cucsa.244670 vs. Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-07
Identity = 37/141 (26.24%), Postives = 64/141 (45.39%), Query Frame = 1 

Query: 96  EIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRDFHTNGIINKAVNETYIVL 155
           E+   L+   +NK+PG  G T+EF +  W     D   +  +    G +  +     + L
Sbjct: 453 ELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSL 512

Query: 156 VAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSENQMPFVKGVVINGDLN 215
           + KK       ++RP+SL +  YK++AK ++ RLK+ L   +  +Q   V G  I     
Sbjct: 513 LPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTI----- 572

Query: 216 LTNLLFADDILLFVEDNDVSI 237
             N+    D+L F     +S+
Sbjct: 573 FDNVFLIRDLLHFARRTGLSL 588

[Close]
BLAST of Cucsa.244670 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 147/534 (27.53%), Postives = 245/534 (45.88%), Query Frame = 1 

Query: 78   SPITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRD 137
            SPI   S + +   F E+EI+  +   + +KAPGP GFT+   +  W   K D++ +F +
Sbjct: 1156 SPIDGESASRLESPFTEEEIYKAIFQMDRDKAPGPDGFTIAVFQDCWDVIKEDLVRVFAE 1215

Query: 138  FHTNGIINKAVNETYIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTV 197
            FH +GIIN++ N ++IVL+ KK    + SD+RPISL T +YK+IAKVLA RL+  L  T+
Sbjct: 1216 FHRSGIINQSTNASFIVLLPKKSISRRISDFRPISLITSLYKIIAKVLAGRLRGVLHETI 1275

Query: 198  SENQMPFVKG------VVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYAL--HLFEI- 257
               Q  FV+G      V+I  ++        ++ ++F  D + +  +L +    H+ E+ 
Sbjct: 1276 HSTQGAFVQGRQILDAVLIANEIVDEKRRTGEEGVVFKIDFEKAYDHLSWDFLDHVLEMK 1335

Query: 258  -------------------ATGLN------INKNKSNIIPINVDTDRDDVITINWGINLQ 317
                               A  +N      +N +KSNI  IN++ +    + +       
Sbjct: 1336 GFSLRWRKWMRGCLSSVSYAVLVNGNAKGWVNLDKSNIYGINIEQNHLSRLAVMLDCKAS 1395

Query: 318  FFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYK 377
             +PI YLG+ LGG P +S FW    ++I ++L+ W+ +Y+S GG+ITLI S LT +P Y 
Sbjct: 1396 GWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYF 1455

Query: 378  LSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAK------YDRECI 437
            LS+F+    +  KIE+  R FLW     G++         W  +   K      + +  +
Sbjct: 1456 LSLFRIPASVAAKIERMQREFLWSGVGEGKRDHLVN----WDVVCKPKSRGGLGFGKISM 1515

Query: 438  SGIPTLSKY-----SNSKSPWNSIIKGVDWFFAHTK-WKIKN------------------ 497
              +  L K+         + W+ +I  +  + +H+  W + N                  
Sbjct: 1516 RNVALLGKWLWRYPREGSALWHQVILSI--YGSHSNGWDVNNNVRWSHRCPWKAIALVFQ 1575

Query: 498  ------------GENTSFWHGLWTDISPLSLYKPILYALSTLQH---DSVKNFWNQNTND 532
                        G+   FW  LW    PL    P L ++ T ++    S+  +    + +
Sbjct: 1576 EFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQYPRLLSVVTDKNALISSIXGYSRPFSWN 1635

[Close]
BLAST of Cucsa.244670 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 

Query: 7   LIDPPLTNAKFTCSNLRTNPTLSRLDRFLYTWEWESNFFTYFSKSLSRITSDHFPVLLET 66
           LID PL +  +T SN++ NP   RLDRFLY+ EWE  F       L R TSDH+P++LET
Sbjct: 906 LIDSPLRSVSYTWSNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLET 965

Query: 67  SNLMLG 73
           +    G
Sbjct: 966 NPFKWG 971


HSP 2 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 111/297 (37.37%), Postives = 166/297 (55.89%), Query Frame = 1 

Query: 78   SPITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRD 137
            SPI+  S + +   F E++I   +   + +KAPGP GFT+   +  W   K D++ +F +
Sbjct: 1537 SPISGESASRLESPFTEEKISKAIFQMDRDKAPGPDGFTIAVFQDCWDVIKEDLVRVFDE 1596

Query: 138  FHTNGIINKAVNETYIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTV 197
            FH +GIIN++ N ++IVL+ KK    K S YRPISL T +YK+IAKVLA RL+  L  T+
Sbjct: 1597 FHRSGIINQSTNASFIVLLPKKSMAKKISXYRPISLITTLYKIIAKVLAGRLRGILHETI 1656

Query: 198  SENQMPFVKGVVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKN 257
               Q  FV+G  I     L  +L A++I   V++   S +        FE A   ++N +
Sbjct: 1657 HSTQGAFVQGRQI-----LDAVLIANEI---VDEKKRSREEGVXFKIDFEKAYD-HVNLD 1716

Query: 258  KSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNN 317
            KSNI  IN+  +    +          +PI YLG+ LGG P S  FW    ++I  +L+ 
Sbjct: 1717 KSNIYGINLGQNHLHRLAKLLDCKASGWPILYLGLPLGGNPKSGGFWDPVIERISSRLDG 1776

Query: 318  WKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQK 375
            W+ +Y+S  G+ITLI S LT +P Y LS+FK    +  +IE+  R+FLW     G++
Sbjct: 1777 WQKAYLSFEGRITLIQSCLTHMPCYFLSLFKIPASVAARIERLQRDFLWXGVGKGKR 1824

[Close]
BLAST of Cucsa.244670 vs. TrEMBL
Match: A5C6D8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016057 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 89/275 (32.36%), Postives = 150/275 (54.55%), Query Frame = 1 

Query: 78  SPITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRD 137
           SPI   S + +   F E+EI+N +   + +K  G  GFT+   +  W   K D++ +F +
Sbjct: 177 SPILEESASRLDSPFTEEEIFNTIFQLDRDKTSGLDGFTIAVFQDYWDVIKEDLVRVFTE 236

Query: 138 FHTNGIINKAVNETYIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTV 197
           FH + IIN+  N ++IVL+ KK +  K SD+RPISL T +YK+I KVL+ RL+  L  T+
Sbjct: 237 FHNSRIINQNTNTSFIVLLPKKSQSKKISDFRPISLITCLYKIITKVLSGRLRGVLHETI 296

Query: 198 SENQMPFVKGVVINGDLNL-------------TNLLFADDILLFVEDNDVSIKNLQYALH 257
              Q    + ++   + NL             ++L FADD +LF    +  +  L+  L 
Sbjct: 297 HSTQDVLSRMLLKAEERNLLEGFRVGRNRCRVSHLQFADDTILFANLREEELHTLKSLLL 356

Query: 258 LFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFW 317
           +F   +GL +N ++SN+  IN+D +    + +        +PI YLG+ LG  P++  FW
Sbjct: 357 VFGQISGLKVNLDQSNLFGINLDQNHLSRLALMLDCKASNWPILYLGLPLGRNPTACGFW 416

Query: 318 TDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSL 340
               ++I ++L+ W+ +Y+S  G+I L+   ++SL
Sbjct: 417 DPVIERISRRLDGWQKAYLSL-GEIDLLQRLMSSL 450


HSP 2 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 5    NSLIDPPLTNAKFTCSNLRTNPTLSRLDRFLYTWEWESNFFTYFSKSLSRITSDHFPVLL 64
            N LIDPPL  A FT SN++ +P    LDRFLY+ EWE  F     + L R TSDH+ ++L
Sbjct: 1381 NKLIDPPLKRASFTWSNMQEHPVCKGLDRFLYSNEWEQLFPQSLQEVLPRWTSDHWLIVL 1440

Query: 65   ETSNLMLG 73
            ET+    G
Sbjct: 1441 ETNPFKWG 1448


HSP 3 Score: 178.3 bits (451), Expect = 2.4e-41
Identity = 126/385 (32.73%), Postives = 189/385 (49.09%), Query Frame = 1 

Query: 92   FNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRDFHTNGIINKAVNET 151
            F+E+EI   L     +KAPGP GFT+ F +  W   K +++++F++F  +G   K++N T
Sbjct: 1017 FSEEEIHFALMEMRGDKAPGPDGFTVAFWQDCWDLVKEEVVDLFKEFFEHGSFAKSLNTT 1076

Query: 152  YIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSENQMPFVKGVVIN 211
            ++VL+ KK       D+RPISL   +YKL+AKVLA RLK  L   VS +Q  FV+G  I 
Sbjct: 1077 FLVLIPKKGGAEDLGDFRPISLLGSLYKLLAKVLANRLKKVLDGVVSVDQNAFVRGTQI- 1136

Query: 212  GDLNLTNLLFADDI-----------LLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSN 271
                L   L A+++           L+   D + +  ++ +   L + A+GL IN  KS 
Sbjct: 1137 ----LDASLVANEVIDYWYKRKKKGLICKLDIEKAYDSINWNF-LMKAASGLRINLAKSV 1196

Query: 272  IIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKY 331
            +IP+  + D  + +    G  L   P  YLG+ LG    +S  W    +++ ++L  WK 
Sbjct: 1197 LIPVG-EVDEMEELATELGCRLGALPTVYLGLPLGAHHKTSSSWDGVEERMRRRLAQWKM 1256

Query: 332  SYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKM 391
             YISKGG+ITLI S+L S+P Y LS+ +    + K+IE+  R+FLW    GG        
Sbjct: 1257 QYISKGGRITLIKSTLASIPIYLLSLIRIPKAVAKRIEKIQRDFLW----GGGSLEGKVH 1316

Query: 392  KPLWKRIIIAKYDREC-ISGIPTLSKYSNSKSPWNSIIKGVDWFFAHTK---WK----IK 448
               WK +   K +    I  I  L+K    K  W          +A+ K   WK    +K
Sbjct: 1317 LINWKVVYSPKEEGGLGIRKIDLLNKALLGKWVWR---------YAYEKDNLWKKAIGVK 1376

[Close]
BLAST of Cucsa.244670 vs. TrEMBL
Match: A5ACS5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019972 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.1e-41
Identity = 101/308 (32.79%), Postives = 165/308 (53.57%), Query Frame = 1 

Query: 80   ITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRDFH 139
            I+     S+ + F+E EI + L     +KAPGP GFTM F +  W + K +IL +F++FH
Sbjct: 1165 ISQQEAESLEIPFSENEIHSALMEMSGDKAPGPDGFTMAFWQSCWDFVKEEILEMFKEFH 1224

Query: 140  TNGIINKAVNETYIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSE 199
                  K++N T++VL+  K       D+RPISL   +YK +AKVLA RLK  L   V+ 
Sbjct: 1225 EQSSFLKSLNNTFLVLIPXKGGAADLGDFRPISLLGGLYKXMAKVLANRLKRVLNKVVAP 1284

Query: 200  NQMPFVKG-VVINGDLNLTNLLFA-----DDILLFVEDNDVSIKNLQYALHLFEI----- 259
             Q  FV G  +++  L    ++ +     +  L+   D + +  N+ +   L  +     
Sbjct: 1285 TQNAFVMGRQILBASLIANEVIDSWXKRKEKGLICKLDIEKAYBNINWQFLLKTLHKMGF 1344

Query: 260  ----------ATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGKP 319
                      ++GL IN +KS IIP+ V  + +++  +  G  +  FP  YLG+ LG   
Sbjct: 1345 GSKWXGWMWSSSGLRINLDKSEIIPVGVVEEIEEM-AVELGCRVGSFPSHYLGLPLGAPN 1404

Query: 320  SSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKIE 367
             ++  W    +K+ ++L  WK  YISKGG+ITLI S+L S+P Y +S+F+    + ++++
Sbjct: 1405 KATSVWDGVEEKVRRRLARWKRQYISKGGRITLIRSALASMPIYHMSLFRMPKSVARRLD 1464

[Close]
BLAST of Cucsa.244670 vs. TrEMBL
Match: A5C0L9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041213 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.8e-40
Identity = 115/344 (33.43%), Postives = 178/344 (51.74%), Query Frame = 1 

Query: 95  QEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRDFHTNGIINKAVNETYIV 154
           +E+   LK F  +KAP   GF+M F + +W + K ++L  FR+FH +G   K++N T+IV
Sbjct: 489 KEVMEALKGFCGDKAPELDGFSMAFWQSSWEFVKEEVLGFFREFHNHGRFVKSLNATFIV 548

Query: 155 LVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTVSENQMPFVKGVVINGDL 214
           L+ KK       D+RPISL   +YK +AKVLA RLK  +   VS+ Q  FV+G  I    
Sbjct: 549 LIPKKGGAEDLRDFRPISLVGDLYKWLAKVLANRLKRVVGKVVSKAQNAFVQGRQI---- 608

Query: 215 NLTNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVI 274
                   D +L+    N+V + +L + L  FE  +GL IN +KS +IP+    + ++ +
Sbjct: 609 -------LDAVLV---ANEVQLLHLNWILMWFEAMSGLRINLDKSELIPVGCVNNVEE-L 668

Query: 275 TINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINS 334
               G  +   P  YLG+ LG +  S   W    +++ KKL  WK  YISKGG ITLI S
Sbjct: 669 AAAIGCKVGSLPTSYLGLPLGAQYRSXAVWDGVEERMRKKLARWKSQYISKGGXITLIRS 728

Query: 335 SLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAKYDR 394
           +L ++P Y +S+      +  ++E+  R FLW    GG          L ++I + K++ 
Sbjct: 729 TLANMPIYFMSMLSMPRKVRLRLERIQREFLW----GG--------GALERKIHLVKWEL 788

Query: 395 ECIS------GIPTLS--------KYS-----NSKSPWNSIIKG 420
            C+       G+ +LS        K+S       ++ WN +I+G
Sbjct: 789 VCLEKDNGGLGVKSLSILNKXLLCKWSWRFAMEREAFWNQVIRG 805

[Close]
BLAST of Cucsa.244670 vs. TAIR10
Match: AT1G43760.1 (AT1G43760.1 DNAse I-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-09
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 

Query: 93  NEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRDFHTNGIINKAVNETY 152
           +++EI   + +   NKAPGP  FT EF  ++W   K   +   ++F   G + K  N T 
Sbjct: 532 SDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATA 591

Query: 153 IVLVAKKEKCTKTSDYRPISLTTVVYKLI 182
           I L+ K     + S +RP+S  TVVYK+I
Sbjct: 592 ITLIPKVTGVDQLSMFRPVSCCTVVYKII 620

[Close]
BLAST of Cucsa.244670 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 7.2e-63
Identity = 142/323 (43.96%), Postives = 186/323 (57.59%), Query Frame = 1 

Query: 205 VKGVVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSNIIPI 264
           +KGV  N   N+++LLFADD+L+FVEDN+  + NLQ AL LFE A+GL  N +KS I PI
Sbjct: 124 IKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEKASGLTFNHSKSTISPI 183

Query: 265 NVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYIS 324
           N+  DR D I   +G   +F P  YLGV LGG P S  FW  T + IHKKLN WKYS IS
Sbjct: 184 NISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTIECIHKKLNGWKYSQIS 243

Query: 325 KGGKITLINSSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQK--------YT 384
           K G++TL+ +SL+SLPTY+LS FKA V + K+IE+HWR+FLW      Q          T
Sbjct: 244 KRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICT 303

Query: 385 SP---------KMKPLWKRII---IAKYDRE-------CISG---------IPTLSKYSN 444
           SP         K+K   + ++   + +Y  E       CI           IP + +  +
Sbjct: 304 SPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPIVGRNCS 363

Query: 445 SKSPWNSIIKGVDWFFAHTKWKIKNGENTSFWHGLWTDISPLSLYKPILYALSTLQHDSV 490
            KSPWN+I K  DWF +   W   +G + SFWH  W +  PLS   P LYALS LQ  +V
Sbjct: 364 VKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSHQIPRLYALSNLQSATV 423

[Close]
BLAST of Cucsa.244670 vs. NCBI nr
Match: gi|659096604|ref|XP_008449185.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 101/187 (54.01%), Postives = 129/187 (68.98%), Query Frame = 1 

Query: 205 VKGVVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSNIIPI 264
           + GV     LNLT++LFADDIL+FVEDN+  I NL+ AL LFE A+GLNIN NKS I PI
Sbjct: 43  IGGVKFGPKLNLTHILFADDILIFVEDNEEYISNLKMALLLFESASGLNINLNKSTIFPI 102

Query: 265 NVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYIS 324
           NV  +R ++I  +WG+     P  YLG+ LGG  SS  FW +  +KI KKL++WKYS +S
Sbjct: 103 NVPVNRANIIVESWGLRKDILPTSYLGMPLGGNLSSLNFWDNILQKIQKKLSSWKYSQLS 162

Query: 325 KGGKITLINSSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLW 384
           KGG+ITLINS+L SLPTY+LS+FKA  GI +KIE  WRNFLW+  + G   +  +    W
Sbjct: 163 KGGRITLINSTLESLPTYQLSVFKALKGIARKIEASWRNFLWKGTSNGHNISLIR----W 222

Query: 385 KRIIIAK 392
            +II  K
Sbjct: 223 AKIITPK 225

[Close]
BLAST of Cucsa.244670 vs. NCBI nr
Match: gi|147802674|emb|CAN62051.1| (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 147/534 (27.53%), Postives = 245/534 (45.88%), Query Frame = 1 

Query: 78   SPITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRD 137
            SPI   S + +   F E+EI+  +   + +KAPGP GFT+   +  W   K D++ +F +
Sbjct: 1156 SPIDGESASRLESPFTEEEIYKAIFQMDRDKAPGPDGFTIAVFQDCWDVIKEDLVRVFAE 1215

Query: 138  FHTNGIINKAVNETYIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTV 197
            FH +GIIN++ N ++IVL+ KK    + SD+RPISL T +YK+IAKVLA RL+  L  T+
Sbjct: 1216 FHRSGIINQSTNASFIVLLPKKSISRRISDFRPISLITSLYKIIAKVLAGRLRGVLHETI 1275

Query: 198  SENQMPFVKG------VVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYAL--HLFEI- 257
               Q  FV+G      V+I  ++        ++ ++F  D + +  +L +    H+ E+ 
Sbjct: 1276 HSTQGAFVQGRQILDAVLIANEIVDEKRRTGEEGVVFKIDFEKAYDHLSWDFLDHVLEMK 1335

Query: 258  -------------------ATGLN------INKNKSNIIPINVDTDRDDVITINWGINLQ 317
                               A  +N      +N +KSNI  IN++ +    + +       
Sbjct: 1336 GFSLRWRKWMRGCLSSVSYAVLVNGNAKGWVNLDKSNIYGINIEQNHLSRLAVMLDCKAS 1395

Query: 318  FFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYK 377
             +PI YLG+ LGG P +S FW    ++I ++L+ W+ +Y+S GG+ITLI S LT +P Y 
Sbjct: 1396 GWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYF 1455

Query: 378  LSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAK------YDRECI 437
            LS+F+    +  KIE+  R FLW     G++         W  +   K      + +  +
Sbjct: 1456 LSLFRIPASVAAKIERMQREFLWSGVGEGKRDHLVN----WDVVCKPKSRGGLGFGKISM 1515

Query: 438  SGIPTLSKY-----SNSKSPWNSIIKGVDWFFAHTK-WKIKN------------------ 497
              +  L K+         + W+ +I  +  + +H+  W + N                  
Sbjct: 1516 RNVALLGKWLWRYPREGSALWHQVILSI--YGSHSNGWDVNNNVRWSHRCPWKAIALVFQ 1575

Query: 498  ------------GENTSFWHGLWTDISPLSLYKPILYALSTLQH---DSVKNFWNQNTND 532
                        G+   FW  LW    PL    P L ++ T ++    S+  +    + +
Sbjct: 1576 EFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQYPRLLSVVTDKNALISSIJGYSRPFSWN 1635

[Close]
BLAST of Cucsa.244670 vs. NCBI nr
Match: gi|147802674|emb|CAN62051.1| (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 

Query: 7   LIDPPLTNAKFTCSNLRTNPTLSRLDRFLYTWEWESNFFTYFSKSLSRITSDHFPVLLET 66
           LID PL +  +T SN++ NP   RLDRFLY+ EWE  F       L R TSDH+P++LET
Sbjct: 906 LIDSPLRSVSYTWSNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLET 965

Query: 67  SNLMLG 73
           +    G
Sbjct: 966 NPFKWG 971


HSP 2 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 126/342 (36.84%), Postives = 177/342 (51.75%), Query Frame = 1 

Query: 205 VKGVVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKNKSNIIPI 264
           +KGV +  D N++++LFADDILLFVEDND+ +KNL+ A+ LFE A+GL IN +KS ++P+
Sbjct: 17  IKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEKASGLKINLSKSVMVPV 76

Query: 265 NVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYIS 324
           NV   R      +W I+    P+ YLGV LGG P S  FW +   +I KKL+NWKY++IS
Sbjct: 77  NVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIEDRIQKKLSNWKYAHIS 136

Query: 325 KGGKITLINSSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLW 384
           KGG++TLI S+L+SLP Y+LS+F+A     K IE+ WRNFLW+   G       K   L 
Sbjct: 137 KGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKGSCGS------KGSHLI 196

Query: 385 KRIIIAKYDRECISGIPTLS-------------KYSNSKSPWNSIIKGVDWFFAHTKWKI 444
              I+ K   E   GI  L               YS   S W  +I        H K++ 
Sbjct: 197 NWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLI--------HIKYQG 256

Query: 445 KNGENTSFWHGLWTDISPLSLYKPILYALSTLQHDSVKNFWNQNTNDWDLRRTLR-SMEI 504
           K+  +      + ++IS  S   P    ++ +        W +    WDL    + S   
Sbjct: 257 KHPGD------IPSNISSSSPKAPWRSIINNID-------WFKRNQGWDLNNGDQISFWF 316

Query: 505 QQWSEIKPILSPPNINLGFDKPLWQLCNSGNFSVASIKKAIH 533
             WS  +  L  P  N G  KP W   +  +F +AS K  I+
Sbjct: 317 SNWSP-EGNLPVPRTNRGPSKPTWIPDSKKSFFIASAKSCIY 330

[Close]
BLAST of Cucsa.244670 vs. NCBI nr
Match: gi|147800373|emb|CAN70928.1| (hypothetical protein VITISV_016057 [Vitis vinifera])

HSP 1 Score: 185.7 bits (470), Expect = 2.2e-43
Identity = 111/297 (37.37%), Postives = 166/297 (55.89%), Query Frame = 1 

Query: 78   SPITNSSKTSICLQFNEQEIWNCLKSFENNKAPGPHGFTMEFLKKTWRYTKVDILNIFRD 137
            SPI+  S + +   F E++I   +   + +KAPGP GFT+   +  W   K D++ +F +
Sbjct: 1537 SPISGESASRLESPFTEEKISKAIFQMDRDKAPGPDGFTIAVFQDCWDVIKEDLVRVFDE 1596

Query: 138  FHTNGIINKAVNETYIVLVAKKEKCTKTSDYRPISLTTVVYKLIAKVLAERLKATLPHTV 197
            FH +GIIN++ N ++IVL+ KK    K S YRPISL T +YK+IAKVLA RL+  L  T+
Sbjct: 1597 FHRSGIINQSTNASFIVLLPKKSMAKKISXYRPISLITTLYKIIAKVLAGRLRGILHETI 1656

Query: 198  SENQMPFVKGVVINGDLNLTNLLFADDILLFVEDNDVSIKNLQYALHLFEIATGLNINKN 257
               Q  FV+G  I     L  +L A++I   V++   S +        FE A   ++N +
Sbjct: 1657 HSTQGAFVQGRQI-----LDAVLIANEI---VDEKKRSREEGVXFKIDFEKAYD-HVNLD 1716

Query: 258  KSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNN 317
            KSNI  IN+  +    +          +PI YLG+ LGG P S  FW    ++I  +L+ 
Sbjct: 1717 KSNIYGINLGQNHLHRLAKLLDCKASGWPILYLGLPLGGNPKSGGFWDPVIERISSRLDG 1776

Query: 318  WKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQK 375
            W+ +Y+S  G+ITLI S LT +P Y LS+FK    +  +IE+  R+FLW     G++
Sbjct: 1777 WQKAYLSFEGRITLIQSCLTHMPCYFLSLFKIPASVAARIERLQRDFLWXGVGKGKR 1824

The following BLAST results are available for this feature:
BLAST of Cucsa.244670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LIN1_NYCCO3.2e-1026.60LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1[more]
LORF2_HUMAN9.2e-1029.63LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1[more]
LORF2_MOUSE3.9e-0831.03LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2[more]
YTX2_XENLA1.1e-0726.24Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1[more]
BLAST of Cucsa.244670 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C377_VITVI1.7e-4727.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1[more]
A5C377_VITVI3.0e-0748.48Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1[more]
A5C6D8_VITVI1.3e-3432.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016057 PE=4 SV=1[more]
A5ACS5_VITVI4.1e-4132.79Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019972 PE=4 SV=1[more]
A5C0L9_VITVI7.8e-4033.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041213 PE=4 SV=1[more]
BLAST of Cucsa.244670 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G43760.11.7e-0935.96 DNAse I-like superfamily protein[more]
BLAST of Cucsa.244670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130833|ref|XP_008465376.1|7.2e-6343.96PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659096604|ref|XP_008449185.1|2.5e-4754.01PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|147802674|emb|CAN62051.1|4.2e-4727.53hypothetical protein VITISV_016641 [Vitis vinifera][more]
gi|147802674|emb|CAN62051.1|4.3e-0748.48hypothetical protein VITISV_016641 [Vitis vinifera][more]
gi|147800373|emb|CAN70928.1|2.2e-4337.37hypothetical protein VITISV_016057 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0044699 single-organism process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.244670.1Cucsa.244670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005135Endonuclease/exonuclease/phosphataseunknownSSF56219DNase I-likecoord: 6..65
score: 2.6
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 1..327
score: 2.5
NoneNo IPR availablePANTHERPTHR19446:SF368SUBFAMILY NOT NAMEDcoord: 1..327
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.244670CSPI03G18120Wild cucumber (PI 183967)cgycpiB366
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.244670Silver-seed gourdcarcgyB0345
Cucsa.244670Silver-seed gourdcarcgyB0436
Cucsa.244670Cucumber (Chinese Long) v3cgycucB369
Cucsa.244670Watermelon (97103) v2cgywmbB435
Cucsa.244670Wax gourdcgywgoB493
Cucsa.244670Cucurbita maxima (Rimu)cgycmaB0685
Cucsa.244670Cucurbita maxima (Rimu)cgycmaB0687
Cucsa.244670Cucurbita moschata (Rifu)cgycmoB0685
Cucsa.244670Cucurbita moschata (Rifu)cgycmoB0687
Cucsa.244670Cucumber (Chinese Long) v2cgycuB350
Cucsa.244670Melon (DHL92) v3.5.1cgymeB417
Cucsa.244670Watermelon (Charleston Gray)cgywcgB433
Cucsa.244670Watermelon (97103) v1cgywmB462
Cucsa.244670Cucurbita pepo (Zucchini)cgycpeB0652
Cucsa.244670Cucurbita pepo (Zucchini)cgycpeB0654
Cucsa.244670Bottle gourd (USVL1VR-Ls)cgylsiB404
Cucsa.244670Melon (DHL92) v3.6.1cgymedB412