CSPI03G18120 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G18120
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposon protein, putative, LINE subclass
Location	Chr3 : 13785671 .. 13786949 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGTAGAGGAAGAATTCATCCAAATAGAGGCATTAGACAAGGGGACCCAATCTCGCCTTTCTATTTGTGATTGCCATGGACTATCTTAGCAGAATACTCAAACATCTTGAGAATACTGAAAAATCAAAGGAGTTGTTATAAATGGGGATCTCAACTTAACAAATCTGCTTTTTGCCGATGACATTCTTCTTTTTGTCGAAGATAATGATGTATCTATAAAAAATCTTCAATACGCTTTACATCTCTTTGAAATAGCCACTGGGCTAAACATCAATAAAAACAAATCCAACATCATCCCGATAAATGTTGATACAGATAGAGATGATGTCATCACAATAAATTGGGGTATCAATTTACAATTCTTCCCTATTCCTTATCTTGGTGTGCTGTTGGGAGGTAAACCATCATCTTCGTATTTCTGGACTGATACAACCAAAAAAATCCACAAAAAACTCAACAATTGGAAGTACTCATATATCTCGAAAGGGGGAAAAATCACTCTCATCAACTCATCTCTTACTAGTCTCCCCACATACAAGCTCTCTATCTTCAAAGCTTCTGTTGGCATATGCAAAAAAATTGAGCAACACTGGAGGAATTTTTTATGGCAAAACTTCACAGGGGGACAGAAATATACATCTCCTAAGATGGTAAAAAATCACAGCCCCTATAAAAAAAGGTGGACTGGGAATATGTCGAGTCGCGGATACAAATTTTGCATTACTTACAAAATGGTTTTGGAGGTTTGTCAATGAGCAGAAGCCTCTCTGGAAGAGAATTATAATTGCAAAATATGATAGAGAGTGCATTAGTGGGATCCCGACATTGAGTAAATATAGCAATAGCAAGTCACCATGGAACTCGATTATCAAAGGTGTGGACTGGTTCTTTGCTCATACCAAATGGAAAATAAAAAATGGAGAAAATACCTCATTCTGGCATGGATTATGGACAGATATATCTCCTCTTTCTCTCTATAAACCCATACTATATGCTTTATCAACTTTACAGCATGACAGTGTCAAGAACTTTTGGAACCAAAATACCAATGATTGGGACCTTCGAAGGACCCTTAGAAGCATGGAAATCCAACAGTGGTCTGAAATAAAACCTATCTTAAGTCCCCCAAACATCAATCTGGGATTTGACAAACCACTCTGGCAACTTTGCAACAGCGGAAATTTTAGTGTTGCATCTATTAAAAAAGCTATACATGTTTTTGATCCCAGGGATGAATGCAACATAGACCCAATGATCTTAGAAAACATCTGA

mRNA sequence

ATGGAAAACGTAGAGGAAGAATTCATCCAAATAGAGGCATTAGACAAGGGGACCCAATCTCGCCTTTCTATTTATAATGATGTATCTATAAAAAATCTTCAATACGCTTTACATCTCTTTGAAATAGCCACTGGGCTAAACATCAATAAAAACAAATCCAACATCATCCCGATAAATGTTGATACAGATAGAGATGATGTCATCACAATAAATTGGGGTATCAATTTACAATTCTTCCCTATTCCTTATCTTGGTGTGCTGTTGGGAGGTAAACCATCATCTTCGTATTTCTGGACTGATACAACCAAAAAAATCCACAAAAAACTCAACAATTGGAAGTACTCATATATCTCGAAAGGGGGAAAAATCACTCTCATCAACTCATCTCTTACTAGTCTCCCCACATACAAGCTCTCTATCTTCAAAGCTTCTGTTGGCATATGCAAAAAAATTGAGCAACACTGGAGGAATTTTTTATGGCAAAACTTCACAGGGGGACAGAAATATACATCTCCTAAGATGAAGCCTCTCTGGAAGAGAATTATAATTGCAAAATATGATAGAGAGTGCATTAGTGGGATCCCGACATTGAGTAAATATAGCAATAGCAAGTCACCATGGAACTCGATTATCAAAGGTGTGGACTGGTTCTTTGCTCATACCAAATGGAAAATAAAAAATGGAGAAAATACCTCATTCTGGCATGGATTATGGACAGATATATCTCCTCTTTCTCTCTATAAACCCATACTATATGCTTTATCAACTTTACAGCATGACAGTGTCAAGAACTTTTGGAACCAAAATACCAATGATTGGGACCTTCGAAGGACCCTTAGAAGCATGGAAATCCAACAGTGGTCTGAAATAAAACCTATCTTAAGTCCCCCAAACATCAATCTGGGATTTGACAAACCACTCTGGCAACTTTGCAACAGCGGAAATTTTAGTGTTGCATCTATTAAAAAAGCTATACATGTTTTTGATCCCAGGGATGAATGCAACATAGACCCAATGATCTTAGAAAACATCTGA

Coding sequence (CDS)

ATGGAAAACGTAGAGGAAGAATTCATCCAAATAGAGGCATTAGACAAGGGGACCCAATCTCGCCTTTCTATTTATAATGATGTATCTATAAAAAATCTTCAATACGCTTTACATCTCTTTGAAATAGCCACTGGGCTAAACATCAATAAAAACAAATCCAACATCATCCCGATAAATGTTGATACAGATAGAGATGATGTCATCACAATAAATTGGGGTATCAATTTACAATTCTTCCCTATTCCTTATCTTGGTGTGCTGTTGGGAGGTAAACCATCATCTTCGTATTTCTGGACTGATACAACCAAAAAAATCCACAAAAAACTCAACAATTGGAAGTACTCATATATCTCGAAAGGGGGAAAAATCACTCTCATCAACTCATCTCTTACTAGTCTCCCCACATACAAGCTCTCTATCTTCAAAGCTTCTGTTGGCATATGCAAAAAAATTGAGCAACACTGGAGGAATTTTTTATGGCAAAACTTCACAGGGGGACAGAAATATACATCTCCTAAGATGAAGCCTCTCTGGAAGAGAATTATAATTGCAAAATATGATAGAGAGTGCATTAGTGGGATCCCGACATTGAGTAAATATAGCAATAGCAAGTCACCATGGAACTCGATTATCAAAGGTGTGGACTGGTTCTTTGCTCATACCAAATGGAAAATAAAAAATGGAGAAAATACCTCATTCTGGCATGGATTATGGACAGATATATCTCCTCTTTCTCTCTATAAACCCATACTATATGCTTTATCAACTTTACAGCATGACAGTGTCAAGAACTTTTGGAACCAAAATACCAATGATTGGGACCTTCGAAGGACCCTTAGAAGCATGGAAATCCAACAGTGGTCTGAAATAAAACCTATCTTAAGTCCCCCAAACATCAATCTGGGATTTGACAAACCACTCTGGCAACTTTGCAACAGCGGAAATTTTAGTGTTGCATCTATTAAAAAAGCTATACATGTTTTTGATCCCAGGGATGAATGCAACATAGACCCAATGATCTTAGAAAACATCTGA

Homology

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BLAST of CSPI03G18120 vs. TrEMBL
Match: M5WJ76_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 105/326 (32.21%), Postives = 161/326 (49.39%), Query Frame = 1


Query: 32   NLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGK 91
            NL   L LF   +G+ INK KS I+ IN  TD  + +  +WG  +  +P+ YLG+ LGG 
Sbjct: 994  NLLQLLKLFCDVSGMKINKAKSCILGINFSTDVLNNMAGSWGCEVGCWPMVYLGLPLGGN 1053

Query: 92   PSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKI 151
            P +  FW    +K+ K+L  WK + +SKGG++TLI + L+S+P+Y +S+FK  +G+  K+
Sbjct: 1054 PRALNFWNPVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKV 1113

Query: 152  EQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAKYD--------RECISGIPT--LSKYS 211
            EQ  RNFLW+    G+K    +    W+R+  +K +        RE I  +    L ++ 
Sbjct: 1114 EQLMRNFLWEGLDEGKKCHLVR----WERVTKSKEEGGLGIGSLRERIEALRAKWLWRFP 1173

Query: 212  -NSKSPWNSIIK---GVD-----WFFAHTKWK---------IKNGENTSFWHGLWTDISP 271
              + S W+ IIK   G+D     W      +          + NGE   FW  LW     
Sbjct: 1174 LETNSLWHRIIKSKYGIDSNGNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKEGI 1233

Query: 272  LSLYKPILYALSTLQHDSVKNFWNQNTN----DWDLRRTLRSMEIQQWSEIKPILSPPNI 323
            L    P L +LS  ++ S+  F N +      D+D RR L   EI +   +  IL   N+
Sbjct: 1234 LKDLFPRLSSLSRRKNQSIACFANNHVLPLNWDFDFRRNLSEAEIAEVVILLDILG--NV 1293

[Close]

BLAST of CSPI03G18120 vs. TrEMBL
Match: A5B9I8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012933 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 96/318 (30.19%), Postives = 150/318 (47.17%), Query Frame = 1


Query: 30   IKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLG 89
            ++ L+  L  F   +GL +N +KSNI  IN+D      +          +PI YLG+LLG
Sbjct: 1370 LQTLKSLLLAFGHISGLKVNLDKSNIYGINLDQAHISRLAETLECKASGWPILYLGLLLG 1429

Query: 90   GKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICK 149
            G P +  FW    ++I ++L+ W+ +Y+S GG+ITLI S LT +P Y LS+FK    +  
Sbjct: 1430 GNPRAGGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYYLSLFKLPASVAA 1489

Query: 150  KIEQHWRNFLWQNFTGGQK---------YTSPKM-KPLWKRIIIAKYDRECISGIPTLSK 209
            KIE+  R+FLW     G+K         +  P+    LW ++I++ Y             
Sbjct: 1490 KIERLQRDFLWSGIGEGKKDHLVRWDVLWRYPREGSALWHQVILSIYGSHSNGWDANTIV 1549

Query: 210  YSNSKSPWNSIIKGVDWFFAHTKWKIKNGENTSFWHGLWTDISPLSLYKPILY------- 269
              + + PW +I +    F + T++ + NGE   FW  LW +  PL    P L+       
Sbjct: 1550 RCSHRCPWKAISQVFQEFSSFTRFVVGNGERIRFWEDLWWEDQPLGSQYPSLFRVVLDKN 1609

Query: 270  -ALSTLQHDSVKNFWNQNTNDWDLRRTLRSMEIQQWSEIKPILSPPNINLGF-DKPLWQL 329
              +S++   +    WN N      RR L   EI+    +   L   +++    D  LW L
Sbjct: 1610 IPISSVLGPTRPFSWNLN-----FRRNLSDSEIEDLEGLMRSLDGVHLSPSVPDARLWPL 1669

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BLAST of CSPI03G18120 vs. TrEMBL
Match: A5B7R4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018101 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 80/255 (31.37%), Postives = 126/255 (49.41%), Query Frame = 1


Query: 68  ITINWGINLQFFPIPYLGVLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLIN 127
           + +  G  +   P  YLG+ LG    +S  W    +++  KL  WK+ YISKGG+ITLI 
Sbjct: 1   MAVELGCKVGQLPSTYLGLPLGAPNKASCVWDGVEERMRWKLALWKWKYISKGGRITLIK 60

Query: 128 SSLTSLPTYKLSIFKASVGICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAKYD 187
           SSL S+P Y LSIF     + +++E+  R+FLW   +  +K      + +WKR+++AKY 
Sbjct: 61  SSLASMPLYXLSIFPMPRTVARRLEKLQRDFLWGGGSTERKAHLVNWERMWKRVLVAKYG 120

Query: 188 RECISGIPTLSKYSNSKSPWNSIIKGVDWFFAHTKWKIKNGENTSFWHGLWTDISPLSLY 247
           +E        +  +     W  I+K  DW + +  +K+  G    FW   W     LS  
Sbjct: 121 QEEFGWRTKKANGAFGVGVWKEILKEADWCWDNMTFKVGKGTRIRFWEDPWCGDVELSRR 180

Query: 248 KPILYALSTLQHDSVKNFWNQNTND--WDLR--RTLRSMEIQQWSEIKPILSPPNINLGF 307
            P L+ ++  ++ +V++ W+QN+    W+LR  R     E+    E+  IL    I L  
Sbjct: 181 FPQLFTVAAQRNATVRDMWDQNSGQGGWNLRFIRGFNDWELNMVGELLQILRSQRITLEE 240

Query: 308 DKPLWQLCNSGNFSV 319
           D  LW+    G F V
Sbjct: 241 DSALWKGGKKGKFGV 255

[Close]

BLAST of CSPI03G18120 vs. TrEMBL
Match: A5B458_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016719 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.5e-31
Identity = 92/318 (28.93%), Postives = 156/318 (49.06%), Query Frame = 1


Query: 26   NDVSIKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLG 85
            N   + +L + L  FE A+GL IN  KS IIP+    D ++ + +  G  +   P  YLG
Sbjct: 1049 NKDHLSHLSWILFWFEAASGLKINLGKSEIIPVGEVEDIEE-LAVEIGCRVGSLPSQYLG 1108

Query: 86   VLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASV 145
            + LG    +S  W    +++ ++L  WK  +ISKGG+ITLI S+L S+P Y++S+F+   
Sbjct: 1109 LPLGAPNKASSVWDGVEERVRRRLALWKRQFISKGGRITLIKSTLASIPIYQMSLFRMPK 1168

Query: 146  GICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAKYDRECISGIPTLSKYSNSKS 205
             + +++E+  R+FLW    GG           W+ +I+AK+ +E           + S  
Sbjct: 1169 IVVRRLEKLQRDFLW----GGGNMERKIHLVKWEIVIVAKFGQEDDGWKSKKPNGAFSVG 1228

Query: 206  PWNSIIKGVDWFFAHTKWKIKNGENTSFWHGLWTDISPLSLYKPILYALSTLQHDSVKNF 265
             W  I+K  DW + + ++ +       FW  +W   + LS   P L+AL+  ++ +V+  
Sbjct: 1229 VWKEIMKETDWCWDNIEFMVGKDTKIRFWTDVWCAGTALSQTFPHLFALAANRNATVEEM 1288

Query: 266  WNQNTND--WDLR--RTLRSMEIQQWSEIKPILSPPNINLGFDKPLWQLCNSGNFSVASI 325
            W+QN++   W LR  R     E+    ++   L     +L  D   W+   +G F V   
Sbjct: 1289 WDQNSDQGGWILRFLRNFNDWEVGMVGDLLLKLRGLRPSLEEDSVSWKGGKNGKFKV--- 1348

Query: 326  KKAIHVFDPRDECNIDPM 340
            K+A         C+++PM
Sbjct: 1349 KEAY-------SCSVNPM 1351

[Close]

BLAST of CSPI03G18120 vs. TrEMBL
Match: A5BTW4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001564 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.0e-29
Identity = 90/312 (28.85%), Postives = 142/312 (45.51%), Query Frame = 1


Query: 33  LQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGKP 92
           L + L  FE A+GL IN  KS IIP+  + D    + +  G  +   P  YL + LG   
Sbjct: 470 LSWILCWFEAASGLRINLAKSEIIPVG-EVDEILEMAVELGCKVGQLPSTYLXLPLGAPN 529

Query: 93  SSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKIE 152
            +   W    +++  KL  WK  YISKGG+IT I S+L S+P Y+LS+F+    +  ++E
Sbjct: 530 KAVCVWDGVEERMRWKLALWKXQYISKGGRITXIKSTLASMPLYQLSLFRMPRVVAXRLE 589

Query: 153 QHWRNFLW----------------------QNFTGGQKYTSPKMKPLWKRIIIAKYDREC 212
           +  R+FLW                      +   G +K+   K + +WK +++AKY +E 
Sbjct: 590 KLQRDFLWXRGSTERKXHLVNWERVCVGKEKGGLGLRKFARAK-EEMWKCVLVAKYGQEE 649

Query: 213 ISGIPTLSKYSNSKSPWNSIIKGVDWFFAHTKWKIKNGENTSFWHGLWTDISPLSLYKPI 272
                  +  +     W  I+K  DW + +  +K+  G    FW   W     L+   P 
Sbjct: 650 FGWRTKKANGAFGVGVWKEILKEXDWCWDNMTFKVGKGTKIRFWKDPWCXDVELARRFPQ 709

Query: 273 LYALSTLQHDSVKNFWNQNTND--WDLR--RTLRSMEIQQWSEIKPILSPPNINLGFDKP 319
           L+ ++  +  +V + W+QN+    W+LR  R     E+    E+  IL    I L  D  
Sbjct: 710 LFNVAAQRSATVGDLWDQNSGQGGWNLRFIRGFNDWELNSXDELLQILRSQXITLEEDLX 769

[Close]

BLAST of CSPI03G18120 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 2.6e-53
Identity = 126/296 (42.57%), Postives = 164/296 (55.41%), Query Frame = 1


Query: 26  NDVSIKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLG 85
           N+  + NLQ AL LFE A+GL  N +KS I PIN+  DR D I   +G   +F P  YLG
Sbjct: 151 NEKYLSNLQMALSLFEKASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLG 210

Query: 86  VLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASV 145
           V LGG P S  FW  T + IHKKLN WKYS ISK G++TL+ +SL+SLPTY+LS FKA V
Sbjct: 211 VPLGGNPRSRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPV 270

Query: 146 GICKKIEQHWRNFLWQNFTGGQK--------YTSP---------KMKPLWKRII---IAK 205
            + K+IE+HWR+FLW      Q          TSP         K+K   + ++   + +
Sbjct: 271 SVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWR 330

Query: 206 YDRE-------CISG---------IPTLSKYSNSKSPWNSIIKGVDWFFAHTKWKIKNGE 265
           Y  E       CI           IP + +  + KSPWN+I K  DWF +   W   +G 
Sbjct: 331 YHNESNSLWKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGS 390

Query: 266 NTSFWHGLWTDISPLSLYKPILYALSTLQHDSVKNFWNQNTNDWDL--RRTLRSME 284
           + SFWH  W +  PLS   P LYALS LQ  +VK  W+Q+T+ W++  RR L   E
Sbjct: 391 SLSFWHSKWQNNIPLSHQIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 446

[Close]

BLAST of CSPI03G18120 vs. NCBI nr
Match: gi|659096604|ref|XP_008449185.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 1.2e-37
Identity = 84/160 (52.50%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 26  NDVSIKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLG 85
           N+  I NL+ AL LFE A+GLNIN NKS I PINV  +R ++I  +WG+     P  YLG
Sbjct: 70  NEEYISNLKMALLLFESASGLNINLNKSTIFPINVPVNRANIIVESWGLRKDILPTSYLG 129

Query: 86  VLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASV 145
           + LGG  SS  FW +  +KI KKL++WKYS +SKGG+ITLINS+L SLPTY+LS+FKA  
Sbjct: 130 MPLGGNLSSLNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQLSVFKALK 189

Query: 146 GICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAK 186
           GI +KIE  WRNFLW+  + G   +  +    W +II  K
Sbjct: 190 GIARKIEASWRNFLWKGTSNGHNISLIR----WAKIITPK 225

[Close]

BLAST of CSPI03G18120 vs. NCBI nr
Match: gi|659093714|ref|XP_008447678.1| (PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 3.7e-36
Identity = 109/315 (34.60%), Postives = 154/315 (48.89%), Query Frame = 1


Query: 26  NDVSIKNLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLG 85
           ND+ +KNL+ A+ LFE A+GL IN +KS ++P+NV   R      +W I+    P+ YLG
Sbjct: 44  NDLYLKNLRMAISLFEKASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLG 103

Query: 86  VLLGGKPSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASV 145
           V LGG P S  FW +   +I KKL+NWKY++ISKGG++TLI S+L+SLP Y+LS+F+A  
Sbjct: 104 VPLGGNPKSKLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPS 163

Query: 146 GICKKIEQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAKYDRECISGIPTLS------- 205
              K IE+ WRNFLW+   G       K   L    I+ K   E   GI  L        
Sbjct: 164 STYKNIEKLWRNFLWKGSCGS------KGSHLINWAIVTKPKEEGELGISKLQITNQALL 223

Query: 206 ------KYSNSKSPWNSIIKGVDWFFAHTKWKIKNGENTSFWHGLWTDISPLSLYKPILY 265
                  YS   S W  +I        H K++ K+  +      + ++IS  S   P   
Sbjct: 224 SKWLWRYYSEPNSLWRRLI--------HIKYQGKHPGD------IPSNISSSSPKAPWRS 283

Query: 266 ALSTLQHDSVKNFWNQNTNDWDLRRTLR-SMEIQQWSEIKPILSPPNINLGFDKPLWQLC 325
            ++ +        W +    WDL    + S     WS  +  L  P  N G  KP W   
Sbjct: 284 IINNID-------WFKRNQGWDLNNGDQISFWFSNWSP-EGNLPVPRTNRGPSKPTWIPD 330

Query: 326 NSGNFSVASIKKAIH 327
           +  +F +AS K  I+
Sbjct: 344 SKKSFFIASAKSCIY 330

[Close]

BLAST of CSPI03G18120 vs. NCBI nr
Match: gi|659122972|ref|XP_008461420.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33
Identity = 83/231 (35.93%), Postives = 124/231 (53.68%), Query Frame = 1


Query: 103 KKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASVG------ICKKIEQHWR 162
           +KI     N+ ++  S G  I+LI  +    P  K  +   SV       +CK       
Sbjct: 12  QKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCK------- 71

Query: 163 NFLWQNFTGGQKYTSPKMKPLWKRIIIAKYDRECISGIPTLSKYSNSKSPWNSIIKGVDW 222
            +LW+  T        +  PLWKR+II+KYD+E +   P+  K+S++ SPW ++ + + W
Sbjct: 72  -WLWKFLT--------EKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISW 131

Query: 223 FFAHTKWKIKNGENTSFWHGLWTDISPLSLYKPILYALSTLQHDSVKNFWNQNTNDWDL- 282
           F+ +  WK+ +G++ SFW   W   +PLSL  P L+ALST +  +VK FWN ++NDW L 
Sbjct: 132 FYNNISWKVNDGDDISFWLDNWNGNAPLSLAVPRLFALSTNKKGTVKEFWNPSSNDWHLH 191

Query: 283 -RRTLRSMEIQQWSEIKPILSPPNINLGFDKPLWQLCNSGNFSVASIKKAI 326
             R LR  E   W  IK  L  P  N G  KPLW+L ++  F  AS+K+A+
Sbjct: 192 INRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWKLNSNNIFDTASVKRAL 226

[Close]

BLAST of CSPI03G18120 vs. NCBI nr
Match: gi|595882371|ref|XP_007212580.1| (hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 105/326 (32.21%), Postives = 161/326 (49.39%), Query Frame = 1


Query: 32   NLQYALHLFEIATGLNINKNKSNIIPINVDTDRDDVITINWGINLQFFPIPYLGVLLGGK 91
            NL   L LF   +G+ INK KS I+ IN  TD  + +  +WG  +  +P+ YLG+ LGG 
Sbjct: 994  NLLQLLKLFCDVSGMKINKAKSCILGINFSTDVLNNMAGSWGCEVGCWPMVYLGLPLGGN 1053

Query: 92   PSSSYFWTDTTKKIHKKLNNWKYSYISKGGKITLINSSLTSLPTYKLSIFKASVGICKKI 151
            P +  FW    +K+ K+L  WK + +SKGG++TLI + L+S+P+Y +S+FK  +G+  K+
Sbjct: 1054 PRALNFWNPVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKV 1113

Query: 152  EQHWRNFLWQNFTGGQKYTSPKMKPLWKRIIIAKYD--------RECISGIPT--LSKYS 211
            EQ  RNFLW+    G+K    +    W+R+  +K +        RE I  +    L ++ 
Sbjct: 1114 EQLMRNFLWEGLDEGKKCHLVR----WERVTKSKEEGGLGIGSLRERIEALRAKWLWRFP 1173

Query: 212  -NSKSPWNSIIK---GVD-----WFFAHTKWK---------IKNGENTSFWHGLWTDISP 271
              + S W+ IIK   G+D     W      +          + NGE   FW  LW     
Sbjct: 1174 LETNSLWHRIIKSKYGIDSNGNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKEGI 1233

Query: 272  LSLYKPILYALSTLQHDSVKNFWNQNTN----DWDLRRTLRSMEIQQWSEIKPILSPPNI 323
            L    P L +LS  ++ S+  F N +      D+D RR L   EI +   +  IL   N+
Sbjct: 1234 LKDLFPRLSSLSRRKNQSIACFANNHVLPLNWDFDFRRNLSEAEIAEVVILLDILG--NV 1293

The following BLAST results are available for this feature:

BLAST of CSPI03G18120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G18120 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WJ76_PRUPE	1.3e-32	32.21	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 S...	[more]
A5B9I8_VITVI	1.3e-32	30.19	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012933 PE=4 SV=1	[more]
A5B7R4_VITVI	1.1e-31	31.37	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018101 PE=4 SV=1	[more]
A5B458_VITVI	2.5e-31	28.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016719 PE=4 SV=1	[more]
A5BTW4_VITVI	4.0e-29	28.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001564 PE=4 SV=1	[more]

BLAST of CSPI03G18120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G18120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130833\|ref\|XP_008465376.1\|	2.6e-53	42.57	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659096604\|ref\|XP_008449185.1\|	1.2e-37	52.50	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659093714\|ref\|XP_008447678.1\|	3.7e-36	34.60	PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo]	[more]
gi\|659122972\|ref\|XP_008461420.1\|	5.0e-33	35.93	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|595882371\|ref\|XP_007212580.1\|	1.9e-32	32.21	hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009987	cellular process
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G18120.1	CSPI03G18120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 28..121 score: 1.6
None	No IPR available	PANTHER	PTHR19446:SF373	SUBFAMILY NOT NAMED	coord: 28..121 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G18120	Cucsa.244670	Cucumber (Gy14) v1	cgycpiB366

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G18120	Silver-seed gourd	carcpiB0326
CSPI03G18120	Silver-seed gourd	carcpiB0405
CSPI03G18120	Cucumber (Chinese Long) v3	cpicucB193
CSPI03G18120	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G18120	Watermelon (97103) v2	cpiwmbB203
CSPI03G18120	Watermelon (97103) v2	cpiwmbB221
CSPI03G18120	Wax gourd	cpiwgoB283
CSPI03G18120	Wax gourd	cpiwgoB311
CSPI03G18120	Wild cucumber (PI 183967)	cpicpiB144
CSPI03G18120	Cucumber (Gy14) v1	cgycpiB333
CSPI03G18120	Cucurbita maxima (Rimu)	cmacpiB125
CSPI03G18120	Cucurbita maxima (Rimu)	cmacpiB326
CSPI03G18120	Cucurbita maxima (Rimu)	cmacpiB520
CSPI03G18120	Cucurbita maxima (Rimu)	cmacpiB705
CSPI03G18120	Cucurbita moschata (Rifu)	cmocpiB120
CSPI03G18120	Cucurbita moschata (Rifu)	cmocpiB315
CSPI03G18120	Cucurbita moschata (Rifu)	cmocpiB510
CSPI03G18120	Cucurbita moschata (Rifu)	cmocpiB698
CSPI03G18120	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G18120	Cucumber (Chinese Long) v2	cpicuB165
CSPI03G18120	Melon (DHL92) v3.5.1	cpimeB185
CSPI03G18120	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G18120	Watermelon (Charleston Gray)	cpiwcgB217
CSPI03G18120	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G18120	Watermelon (97103) v1	cpiwmB242
CSPI03G18120	Watermelon (97103) v1	cpiwmB271
CSPI03G18120	Cucurbita pepo (Zucchini)	cpecpiB208
CSPI03G18120	Cucurbita pepo (Zucchini)	cpecpiB388
CSPI03G18120	Cucurbita pepo (Zucchini)	cpecpiB680
CSPI03G18120	Bottle gourd (USVL1VR-Ls)	cpilsiB188
CSPI03G18120	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G18120	Melon (DHL92) v3.6.1	cpimedB180
CSPI03G18120	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G18120	Cucumber (Gy14) v2	cgybcpiB110