Cucsa.239270 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.239270
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cysteine sulfinate desulfinase/cysteine desulfurase and-related enzyme, putative
Location	scaffold02046 : 147525 .. 147659 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGATGTTTGGATTTGGATCTAATGATGAGACAGGCACTCAAATTCCAACCCAAGCCCAATCGATTGTGGAAGGATCAGGATCCGTTATGGTTTCTGAGTTCAAACCAGTTCCTGATGTTGATTATCTACAG

mRNA sequence

ATGCGGATGTTTGGATTTGGATCTAATGATGAGACAGGCACTCAAATTCCAACCCAAGCCCAATCGATTGTGGAAGGATCAGGATCCGTTATGGTTTCTGAGTTCAAACCAGTTCCTGATGTTGATTATCTACAG

Coding sequence (CDS)

ATGCGGATGTTTGGATTTGGATCTAATGATGAGACAGGCACTCAAATTCCAACCCAAGCCCAATCGATTGTGGAAGGATCAGGATCCGTTATGGTTTCTGAGTTCAAACCAGTTCCTGATGTTGATTATCTACAG

Protein sequence

MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ

Homology

[Close]

BLAST of Cucsa.239270 vs. TrEMBL
Match: A0A0A0K8V7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232500 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1


Query: 1   MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ
Sbjct: 78  MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 122

[Close]

BLAST of Cucsa.239270 vs. TrEMBL
Match: V4SXJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012405mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-11
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 6  FGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
          FGS+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDYLQ
Sbjct: 21 FGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60

[Close]

BLAST of Cucsa.239270 vs. TrEMBL
Match: A0A067ED30_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0233341mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-11
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 6  FGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
          FGS+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDYLQ
Sbjct: 21 FGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 60

[Close]

BLAST of Cucsa.239270 vs. TrEMBL
Match: A0A067EQB0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0233341mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-11
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 6   FGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           FGS+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDYLQ
Sbjct: 91  FGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130

[Close]

BLAST of Cucsa.239270 vs. TrEMBL
Match: V4SMK8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012405mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-11
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 6   FGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           FGS+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDYLQ
Sbjct: 91  FGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130

[Close]

BLAST of Cucsa.239270 vs. TAIR10
Match: AT2G43945.1 (AT2G43945.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-09
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1


Query: 8   SNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           S++++G +IPTQAQ+IVEGSGSV VSE KP  DVDY+Q
Sbjct: 99  SDEDSGLRIPTQAQAIVEGSGSVAVSELKPAADVDYIQ 136

[Close]

BLAST of Cucsa.239270 vs. TAIR10
Match: AT3G59870.1 (AT3G59870.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-07
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 12  TGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           TG +IPTQAQ+IVEG GS+ VSE + VPDVDY+Q
Sbjct: 102 TGLRIPTQAQAIVEGPGSLAVSELQRVPDVDYIQ 135

[Close]

BLAST of Cucsa.239270 vs. NCBI nr
Match: gi|449444096|ref|XP_004139811.1| (PREDICTED: uncharacterized protein LOC101209189 isoform X1 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 9.5e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1


Query: 1   MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ
Sbjct: 78  MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 122

[Close]

BLAST of Cucsa.239270 vs. NCBI nr
Match: gi|778725847|ref|XP_011659013.1| (PREDICTED: uncharacterized protein LOC101209189 isoform X2 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 9.5e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1


Query: 1  MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
          MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ
Sbjct: 1  MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 45

[Close]

BLAST of Cucsa.239270 vs. NCBI nr
Match: gi|700188993|gb|KGN44226.1| (hypothetical protein Csa_7G232500 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 9.5e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1


Query: 1   MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ
Sbjct: 78  MRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 122

[Close]

BLAST of Cucsa.239270 vs. NCBI nr
Match: gi|659092673|ref|XP_008447166.1| (PREDICTED: uncharacterized protein LOC103489683 isoform X1 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 2   RMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
           RMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ
Sbjct: 81  RMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 124

[Close]

BLAST of Cucsa.239270 vs. NCBI nr
Match: gi|659092675|ref|XP_008447167.1| (PREDICTED: uncharacterized protein LOC103489683 isoform X2 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1


Query: 3  MFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 46
          MFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ
Sbjct: 1  MFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQ 43

The following BLAST results are available for this feature:

BLAST of Cucsa.239270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V7_CUCSA	6.6e-17	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232500 PE=4 SV=1	[more]
V4SXJ1_9ROSI	2.4e-11	85.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012405mg PE=4 SV=1	[more]
A0A067ED30_CITSI	2.4e-11	85.00	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0233341mg PE=4 ...	[more]
A0A067EQB0_CITSI	2.4e-11	85.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0233341mg PE=4 SV=1	[more]
V4SMK8_9ROSI	2.4e-11	85.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012405mg PE=4 SV=1	[more]

BLAST of Cucsa.239270 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43945.1	2.7e-09	68.42	unknown protein	[more]
AT3G59870.1	1.1e-07	70.59	unknown protein	[more]

BLAST of Cucsa.239270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444096\|ref\|XP_004139811.1\|	9.5e-17	100.00	PREDICTED: uncharacterized protein LOC101209189 isoform X1 [Cucumis sativus]	[more]
gi\|778725847\|ref\|XP_011659013.1\|	9.5e-17	100.00	PREDICTED: uncharacterized protein LOC101209189 isoform X2 [Cucumis sativus]	[more]
gi\|700188993\|gb\|KGN44226.1\|	9.5e-17	100.00	hypothetical protein Csa_7G232500 [Cucumis sativus]	[more]
gi\|659092673\|ref\|XP_008447166.1\|	3.6e-16	100.00	PREDICTED: uncharacterized protein LOC103489683 isoform X1 [Cucumis melo]	[more]
gi\|659092675\|ref\|XP_008447167.1\|	1.4e-15	100.00	PREDICTED: uncharacterized protein LOC103489683 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.239270.1	Cucsa.239270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32183	FAMILY NOT NAMED	coord: 6..44 score: 2.7
None	No IPR available	PANTHER	PTHR32183:SF3	SUBFAMILY NOT NAMED	coord: 6..44 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.239270	Csa7G232500	Cucumber (Chinese Long) v2	cgycuB341
Cucsa.239270	MELO3C012671	Melon (DHL92) v3.5.1	cgymeB405
Cucsa.239270	CSPI07G10390	Wild cucumber (PI 183967)	cgycpiB357
Cucsa.239270	CsaV3_7G022350	Cucumber (Chinese Long) v3	cgycucB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.239270	Melon (DHL92) v3.6.1	cgymedB403