Cucsa.236570 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.236570
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold02018 : 385586 .. 385795 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGCATATGGCTGTTGGTGGTTGTGATCAATGAAACTCAGGTGTCCAAGGCAGTGAAATGCGACCCAGGGGAGTTGAGACCATGTCATTTGTCCTTCACAATGTCGATGGAGCCATCGTCGGCTTGTTGCAAGAAGGTGCTGCAGCATAGGACATGCTATTGTGAATATAGTAAAAATCCAAAGACTCAACCTTTTTTtAAAtAA

mRNA sequence

ATGAGAGGCATATGGCTGTTGGTGGTTGTGATCAATGAAACTCAGGTGTCCAAGGCAGTGAAATGCGACCCAGGGGAGTTGAGACCATGTCATTTGTCCTTCACAATGTCGATGGAGCCATCGTCGGCTTGTTGCAAGAAGGTGCTGCAGCATAGGACATGCTATTGTGAATATAGTAAAAATCCAAAGACTCAACCTTTTTTTAAATAA

Coding sequence (CDS)

ATGAGAGGCATATGGCTGTTGGTGGTTGTGATCAATGAAACTCAGGTGTCCAAGGCAGTGAAATGCGACCCAGGGGAGTTGAGACCATGTCATTTGTCCTTCACAATGTCGATGGAGCCATCGTCGGCTTGTTGCAAGAAGGTGCTGCAGCATAGGACATGCTATTGTGAATATAGTAAAAATCCAAAGACTCAACCTTTTTTtAAAtAA

Protein sequence

MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQPFFK*

Homology

[Close]

BLAST of Cucsa.236570 vs. TrEMBL
Match: A0A0A0M3W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G711160 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.5e-33
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60
          MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK
Sbjct: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60

Query: 61 NPKTQPFFK 70
          NPKTQP+ K
Sbjct: 61 NPKTQPYLK 69

[Close]

BLAST of Cucsa.236570 vs. TrEMBL
Match: A0A068U392_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040236001 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-08
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNP 63
          L+V+++ E QVS+A+ C P EL PC  +F     PS ACC K+ + R C+C Y ++P
Sbjct: 9  LVVMIVGEVQVSRAIICSPTELSPCVAAFISQQPPSGACCSKLREQRPCFCGYLRDP 65

[Close]

BLAST of Cucsa.236570 vs. TrEMBL
Match: A0A0A0KW80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G141210 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.7e-08
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 3  GIWLLVVV---INETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYS 62
          G+ LLVVV   ++  ++ +AV C+P EL PC  + T S  P++ACC+K+ Q   CYC Y 
Sbjct: 8  GLCLLVVVAIFLSSVRLGEAVSCNPTELSPCVSAITSSTAPTAACCQKLRQQEPCYCGYL 67

Query: 63 KNPKTQPF 68
          K+PK + +
Sbjct: 68 KDPKYKAY 75

[Close]

BLAST of Cucsa.236570 vs. TrEMBL
Match: A0A068TST2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022490001 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1


Query: 3  GIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNP 62
          G  L+++++ E  VS+AV C+P EL PC  +   S  PSS CC K+ + + C C+Y KNP
Sbjct: 10 GAVLMLLLLVEANVSEAVTCNPNELNPCAGAIGSSSPPSSQCCSKIKEQKPCLCQYVKNP 69

Query: 63 KTQPF 68
            + F
Sbjct: 70 TFKQF 74

[Close]

BLAST of Cucsa.236570 vs. TrEMBL
Match: A0A0D2M115_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G202600 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQ 65
          ++V+   ET+ ++AV CD  EL PC  + T S  PSS CC K+ + + C+C+Y +NP  +
Sbjct: 15 VVVLFSGETRTAEAVTCDLSELSPCLAAITSSKPPSSTCCSKLTEQKPCFCQYLRNPTMK 74

Query: 66 PF 68
           F
Sbjct: 75 QF 76

[Close]

BLAST of Cucsa.236570 vs. TAIR10
Match: AT1G73780.1 (AT1G73780.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-09
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 1


Query: 4  IWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPK 63
          I L+++V  E +V+    C+P +L PC  +     EPS  CC KV + + C C+Y KNP 
Sbjct: 15 ILLILIVAQENRVAAVDPCNPAQLSPCLETIMKGSEPSDLCCSKVKEQQHCICQYLKNPN 74

Query: 64 TQPF 68
           + F
Sbjct: 75 FKSF 78

[Close]

BLAST of Cucsa.236570 vs. TAIR10
Match: AT3G18280.1 (AT3G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-07
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 1


Query: 17 SKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQPF 68
          ++AV C P +L PC  + T S  PS+ CC K+ + R C C Y +NP  + F
Sbjct: 26 AEAVTCSPMQLSPCATAITSSSPPSALCCAKLKEQRPCLCGYMRNPSLRRF 76

[Close]

BLAST of Cucsa.236570 vs. TAIR10
Match: AT5G38180.1 (AT5G38180.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 21/62 (33.87%), Postives = 37/62 (59.68%), Query Frame = 1


Query: 4  IWLLVVVINETQVSKAVK---CDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 63
          I  +++V++   + KA +   C P EL PC  + T   +P+  CC+ +++ +TC C+Y K
Sbjct: 9  ITFVIIVLSSPILMKAEETQSCVPMELMPCLPAMTKREQPTKDCCENLIKQKTCLCDYIK 68

[Close]

BLAST of Cucsa.236570 vs. TAIR10
Match: AT1G43667.1 (AT1G43667.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.3e-06
Identity = 18/46 (39.13%), Postives = 29/46 (63.04%), Query Frame = 1


Query: 18 KAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPK 64
          K V C   EL+PC  S     +PS+ CC+K+ +  +C+C+Y +NP+
Sbjct: 31 KKVACTVTELQPCLPSVIDGSQPSTQCCEKLKEQNSCFCDYLQNPQ 76

[Close]

BLAST of Cucsa.236570 vs. NCBI nr
Match: gi|700211810|gb|KGN66906.1| (hypothetical protein Csa_1G711160 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.1e-33
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60
          MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK
Sbjct: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60

Query: 61 NPKTQPFFK 70
          NPKTQP+ K
Sbjct: 61 NPKTQPYLK 69

[Close]

BLAST of Cucsa.236570 vs. NCBI nr
Match: gi|659118474|ref|XP_008459140.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 6.6e-25
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 1  MRGIWLL-----VVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCY 60
          M+GI LL     VVVIN TQVSKA KCDP ELRPCHLSFTMSMEPSSACCKKV++HR+CY
Sbjct: 1  MKGICLLIVVIVVVVINGTQVSKAGKCDPEELRPCHLSFTMSMEPSSACCKKVVEHRSCY 60

Query: 61 CEYSKNPKTQPFFK 70
          CEYSKNPK QP+ K
Sbjct: 61 CEYSKNPKIQPYLK 74

[Close]

BLAST of Cucsa.236570 vs. NCBI nr
Match: gi|747042034|ref|XP_011076327.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Sesamum indicum])

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-10
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQ 65
          +LV+++ E +V+ AV C+P +L PC  + T S +PS+ACC K+ + R C C+Y KNP  Q
Sbjct: 15 VLVLILGEVEVTNAVTCNPLQLSPCASAITSSSKPSAACCAKIKEQRPCLCQYMKNPNLQ 74

Query: 66 PFFK 70
           F K
Sbjct: 75 KFIK 78

[Close]

BLAST of Cucsa.236570 vs. NCBI nr
Match: gi|661894311|emb|CDP02752.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-08
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNP 63
          L+V+++ E QVS+A+ C P EL PC  +F     PS ACC K+ + R C+C Y ++P
Sbjct: 9  LVVMIVGEVQVSRAIICSPTELSPCVAAFISQQPPSGACCSKLREQRPCFCGYLRDP 65

[Close]

BLAST of Cucsa.236570 vs. NCBI nr
Match: gi|1021520358|ref|XP_016203570.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Arachis ipaensis])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQ 65
          ++V+++ E QVS AV C P +L PC  + T S  PSS CC K+ + + C C+Y +NP  +
Sbjct: 11 MMVLLLAEVQVSMAVTCSPVQLSPCVSAITTSNPPSSLCCSKIREQKPCLCQYVRNPNLK 70

Query: 66 PF 68
           F
Sbjct: 71 KF 72

The following BLAST results are available for this feature:

BLAST of Cucsa.236570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3W7_CUCSA	3.5e-33	97.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G711160 PE=4 SV=1	[more]
A0A068U392_COFCA	6.7e-08	43.86	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040236001 PE=4 SV=1	[more]
A0A0A0KW80_CUCSA	8.7e-08	42.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G141210 PE=4 SV=1	[more]
A0A068TST2_COFCA	1.1e-07	41.54	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022490001 PE=4 SV=1	[more]
A0A0D2M115_GOSRA	1.9e-07	40.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G202600 PE=4 SV=1	[more]

BLAST of Cucsa.236570 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73780.1	3.2e-09	37.50	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G18280.1	1.0e-07	41.18	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G38180.1	1.1e-06	33.87	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G43667.1	4.3e-06	39.13	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of Cucsa.236570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211810\|gb\|KGN66906.1\|	5.1e-33	97.10	hypothetical protein Csa_1G711160 [Cucumis sativus]	[more]
gi\|659118474\|ref\|XP_008459140.1\|	6.6e-25	78.38	PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo]	[more]
gi\|747042034\|ref\|XP_011076327.1\|	4.6e-10	45.31	PREDICTED: non-specific lipid-transfer protein 2-like [Sesamum indicum]	[more]
gi\|661894311\|emb\|CDP02752.1\|	9.6e-08	43.86	unnamed protein product [Coffea canephora]	[more]
gi\|1021520358\|ref\|XP_016203570.1\|	1.3e-07	41.94	PREDICTED: non-specific lipid-transfer protein 2-like [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.236570.1	Cucsa.236570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 21..64 score: 2.6
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 21..68 score: 1.4
None	No IPR available	PANTHER	PTHR33214	FAMILY NOT NAMED	coord: 6..68 score: 3.8
None	No IPR available	PANTHER	PTHR33214:SF7	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 6..68 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.236570	Csa1G711160	Cucumber (Chinese Long) v2	cgycuB336
Cucsa.236570	CSPI01G34770	Wild cucumber (PI 183967)	cgycpiB352
Cucsa.236570	Lsi02G010360	Bottle gourd (USVL1VR-Ls)	cgylsiB385
Cucsa.236570	MELO3C021798.2	Melon (DHL92) v3.6.1	cgymedB397
Cucsa.236570	CsaV3_1G046630	Cucumber (Chinese Long) v3	cgycucB356
Cucsa.236570	Bhi08G000772	Wax gourd	cgywgoB468

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.236570	Watermelon (97103) v2	cgywmbB417
Cucsa.236570	Cucurbita maxima (Rimu)	cgycmaB0653
Cucsa.236570	Cucurbita maxima (Rimu)	cgycmaB0656
Cucsa.236570	Cucurbita moschata (Rifu)	cgycmoB0654
Cucsa.236570	Cucurbita moschata (Rifu)	cgycmoB0657
Cucsa.236570	Melon (DHL92) v3.5.1	cgymeB399
Cucsa.236570	Watermelon (Charleston Gray)	cgywcgB415
Cucsa.236570	Watermelon (97103) v1	cgywmB442
Cucsa.236570	Cucurbita pepo (Zucchini)	cgycpeB0622
Cucsa.236570	Cucurbita pepo (Zucchini)	cgycpeB0625
Cucsa.236570	Bottle gourd (USVL1VR-Ls)	cgylsiB386
Cucsa.236570	Silver-seed gourd	carcgyB0465
Cucsa.236570	Silver-seed gourd	carcgyB0518