CSPI01G34770 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G34770
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Nonspecific lipid-transfer protein
Location	Chr1 : 29853087 .. 29853390 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCAAAACACACCATAGATTGGAGAAAATTTATTCAATGAGAGGCATATGGCTGTTGGTGGTTGTGATCAATGAAACTCAGGTGTCCAAGGCAGTGAAATGCGACCCAGGGGAGTTGAGACCATGTCATTTGTCCTTCACAATGTCGATGGAGCCATCGTCGGCTTGTTGCAAGAAGGTGCTGCAGCATAGGACATGCTATTGTGAATATAGTAAAAATCCAAAGACTCGACCTTATTTAAAATATGATGCCACTCAAAGGATCATTTCTGATTGTGGCGTTGCAATCCCAACTTGCTAA

mRNA sequence

ATGAGAGGCATATGGCTGTTGGTGGTTGTGATCAATGAAACTCAGGTGTCCAAGGCAGTGAAATGCGACCCAGGGGAGTTGAGACCATGTCATTTGTCCTTCACAATGTCGATGGAGCCATCGTCGGCTTGTTGCAAGAAGGTGCTGCAGCATAGGACATGCTATTGTGAATATAGTAAAAATCCAAAGACTCGACCTTATTTAAAATATGATGCCACTCAAAGGATCATTTCTGATTGTGGCGTTGCAATCCCAACTTGCTAA

Coding sequence (CDS)

ATGAGAGGCATATGGCTGTTGGTGGTTGTGATCAATGAAACTCAGGTGTCCAAGGCAGTGAAATGCGACCCAGGGGAGTTGAGACCATGTCATTTGTCCTTCACAATGTCGATGGAGCCATCGTCGGCTTGTTGCAAGAAGGTGCTGCAGCATAGGACATGCTATTGTGAATATAGTAAAAATCCAAAGACTCGACCTTATTTAAAATATGATGCCACTCAAAGGATCATTTCTGATTGTGGCGTTGCAATCCCAACTTGCTAA

Homology

[Close]

BLAST of CSPI01G34770 vs. Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.2e-12
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 10 VINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLK 69
          +I+   V++AV C+P EL  C  + T   +PSS CC K+     C C Y KNP  + Y+ 
Sbjct: 22 LIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVN 81

Query: 70 YDATQRIISDCGVAIPTC 88
              ++++S+CGV  P C
Sbjct: 82 SPGAKKVLSNCGVTYPNC 99

[Close]

BLAST of CSPI01G34770 vs. Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-09
Identity = 24/68 (35.29%), Postives = 35/68 (51.47%), Query Frame = 1


Query: 20 VKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLKYDATQRIISD 79
          V C P +L PC           + CC+K+ + R C C Y KNP  R Y+     +++ S+
Sbjct: 1  VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASN 60

Query: 80 CGVAIPTC 88
          CGV +P C
Sbjct: 61 CGVPVPQC 68

[Close]

BLAST of CSPI01G34770 vs. Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 20/66 (30.30%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 22 CDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLKYDATQRIISDCG 81
          C+ G+L  C  +      P++ACC  +   + C+C+++K+P+   Y+     ++ +S CG
Sbjct: 30 CNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCG 89

Query: 82 VAIPTC 88
          +A+PTC
Sbjct: 90 IALPTC 95

[Close]

BLAST of CSPI01G34770 vs. Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 20/66 (30.30%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 22 CDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLKYDATQRIISDCG 81
          C+ G+L  C  +      P++ACC  +   + C+C+++K+P+   Y+     ++ +S CG
Sbjct: 30 CNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCG 89

Query: 82 VAIPTC 88
          +A+PTC
Sbjct: 90 IALPTC 95

[Close]

BLAST of CSPI01G34770 vs. Swiss-Prot
Match: NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-08
Identity = 22/63 (34.92%), Postives = 35/63 (55.56%), Query Frame = 1


Query: 22 CDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLKYDATQRIISDCG 81
          C   +L PC  + T +  PS+ACC K+ + + C C Y K+P  + Y+     ++  S CG
Sbjct: 3  CSAVQLSPCLAAITKNTPPSAACCNKLKEQKPCLCGYLKDPNLKNYVNSPGARKTASSCG 62

Query: 82 VAI 85
          VA+
Sbjct: 63 VAL 65

[Close]

BLAST of CSPI01G34770 vs. TrEMBL
Match: A0A0A0M3W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G711160 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-45
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60
          MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK
Sbjct: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60

Query: 61 NPKTRPYLKYDATQRIISDCGVAIPTC 88
          NPKT+PYLKYDATQRIISDCGVAIPTC
Sbjct: 61 NPKTQPYLKYDATQRIISDCGVAIPTC 87

[Close]

BLAST of CSPI01G34770 vs. TrEMBL
Match: A0A0B2QIV0_GLYSO (Putative non-specific lipid-transfer protein AKCS9 OS=Glycine soja GN=glysoja_037194 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 10 VINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLK 69
          ++  + +++AV C P EL PC  + T S  PS+ CC+KV + R C C Y KNP  RPY+ 
Sbjct: 20 LVEMSPMAEAVTCSPVELSPCLGAITSSSPPSTTCCQKVREQRPCLCGYLKNPSLRPYVN 79

Query: 70 YDATQRIISDCGVAIPTC 88
             ++R+ S CGV  PTC
Sbjct: 80 SPGSRRVASSCGVPFPTC 97

[Close]

BLAST of CSPI01G34770 vs. TrEMBL
Match: I1N5L5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G002300 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 10 VINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLK 69
          ++  + +++AV C P EL PC  + T S  PS+ CC+KV + R C C Y KNP  RPY+ 
Sbjct: 20 LVEMSPMAEAVTCSPVELSPCLGAITSSSPPSTTCCQKVREQRPCLCGYLKNPSLRPYVN 79

Query: 70 YDATQRIISDCGVAIPTC 88
             ++R+ S CGV  PTC
Sbjct: 80 SPGSRRVASSCGVPFPTC 97

[Close]

BLAST of CSPI01G34770 vs. TrEMBL
Match: A0A067FIG1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034237mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1


Query: 4   IWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPK 63
           + + V  +++  V++AV C P EL PC  + T S  PS ACC K+ Q R C C Y +NP 
Sbjct: 17  VLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPN 76

Query: 64  TRPYLKYDATQRIISDCGVAIPTC 88
            R Y+     +RI++ CG+  P C
Sbjct: 77  LRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of CSPI01G34770 vs. TrEMBL
Match: V4SY21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013188mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1


Query: 4   IWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPK 63
           + + V  +++  V++AV C P EL PC  + T S  PS ACC K+ Q R C C Y +NP 
Sbjct: 17  VLVAVAALSQVHVAEAVTCSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPN 76

Query: 64  TRPYLKYDATQRIISDCGVAIPTC 88
            R Y+     +RI++ CG+  P C
Sbjct: 77  LRQYVNSPNAKRIVATCGIPYPRC 100

[Close]

BLAST of CSPI01G34770 vs. TAIR10
Match: AT1G73780.1 (AT1G73780.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-12
Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 1


Query: 4  IWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPK 63
          I L+++V  E +V+    C+P +L PC  +     EPS  CC KV + + C C+Y KNP 
Sbjct: 15 ILLILIVAQENRVAAVDPCNPAQLSPCLETIMKGSEPSDLCCSKVKEQQHCICQYLKNPN 74

Query: 64 TRPYLKYDATQRIISDCGVAIPTC 88
           + +L     + I +DC    P C
Sbjct: 75 FKSFLNSPNAKIIATDCHCPYPKC 98

[Close]

BLAST of CSPI01G34770 vs. TAIR10
Match: AT3G18280.1 (AT3G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-11
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 1


Query: 17 SKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLKYDATQRI 76
          ++AV C P +L PC  + T S  PS+ CC K+ + R C C Y +NP  R ++     +++
Sbjct: 26 AEAVTCSPMQLSPCATAITSSSPPSALCCAKLKEQRPCLCGYMRNPSLRRFVSTPNARKV 85

Query: 77 ISDCGVAIPTC 88
             C + IP C
Sbjct: 86 SKSCKLPIPRC 96

[Close]

BLAST of CSPI01G34770 vs. TAIR10
Match: AT1G48750.1 (AT1G48750.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 7.3e-11
Identity = 24/79 (30.38%), Postives = 42/79 (53.16%), Query Frame = 1


Query: 9  VVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYL 68
          +++    V++ V C P +L  C  + T S  PS ACC K+ + + C C Y +NP  R Y+
Sbjct: 16 ILLLTVPVAEGVTCSPMQLASCAAAMTSSSPPSEACCTKLREQQPCLCGYMRNPTLRQYV 75

Query: 69 KYDATQRIISDCGVAIPTC 88
               +++ + C +  P+C
Sbjct: 76 SSPNARKVSNSCKIPSPSC 94

[Close]

BLAST of CSPI01G34770 vs. TAIR10
Match: AT1G43667.1 (AT1G43667.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 18 KAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLKYDATQRII 77
          K V C   EL+PC  S     +PS+ CC+K+ +  +C+C+Y +NP+   Y+   A ++I+
Sbjct: 31 KKVACTVTELQPCLPSVIDGSQPSTQCCEKLKEQNSCFCDYLQNPQFSQYI--TAAKQIL 90

Query: 78 SDCGVAIPTC 88
          + C +  P C
Sbjct: 91 AACKIPYPNC 98

[Close]

BLAST of CSPI01G34770 vs. TAIR10
Match: AT5G38160.1 (AT5G38160.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 24/68 (35.29%), Postives = 36/68 (52.94%), Query Frame = 1


Query: 20  VKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLKYDATQRIISD 79
           V CD  +L  C  + +    PS+ CC K+ +H TC C Y +NP    Y+     ++ ++ 
Sbjct: 36  VTCDATQLSSCVTAVSTGAPPSTDCCGKLKEHETCLCTYIQNPLYSSYVTSPNARKTLAA 95

Query: 80  CGVAIPTC 88
           C VA PTC
Sbjct: 96  CDVAYPTC 103

[Close]

BLAST of CSPI01G34770 vs. NCBI nr
Match: gi|700211810|gb|KGN66906.1| (hypothetical protein Csa_1G711160 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-45
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60
          MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK
Sbjct: 1  MRGIWLLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSK 60

Query: 61 NPKTRPYLKYDATQRIISDCGVAIPTC 88
          NPKT+PYLKYDATQRIISDCGVAIPTC
Sbjct: 61 NPKTQPYLKYDATQRIISDCGVAIPTC 87

[Close]

BLAST of CSPI01G34770 vs. NCBI nr
Match: gi|659118474|ref|XP_008459140.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-35
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1  MRGIWLL-----VVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCY 60
          M+GI LL     VVVIN TQVSKA KCDP ELRPCHLSFTMSMEPSSACCKKV++HR+CY
Sbjct: 1  MKGICLLIVVIVVVVINGTQVSKAGKCDPEELRPCHLSFTMSMEPSSACCKKVVEHRSCY 60

Query: 61 CEYSKNPKTRPYLKYDATQRIISDCGVAIPTC 88
          CEYSKNPK +PYLKYDATQ IIS CGVAIPTC
Sbjct: 61 CEYSKNPKIQPYLKYDATQNIISHCGVAIPTC 92

[Close]

BLAST of CSPI01G34770 vs. NCBI nr
Match: gi|747042034|ref|XP_011076327.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Sesamum indicum])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTR 65
          +LV+++ E +V+ AV C+P +L PC  + T S +PS+ACC K+ + R C C+Y KNP  +
Sbjct: 15 VLVLILGEVEVTNAVTCNPLQLSPCASAITSSSKPSAACCAKIKEQRPCLCQYMKNPNLQ 74

Query: 66 PYLKYDATQRIISDCGVAIPTC 88
           ++K    +++ + CG   P C
Sbjct: 75 KFIKSPGAKKVANSCGTPYPRC 96

[Close]

BLAST of CSPI01G34770 vs. NCBI nr
Match: gi|734371828|gb|KHN19692.1| (Putative non-specific lipid-transfer protein AKCS9 [Glycine soja])

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 10 VINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTRPYLK 69
          ++  + +++AV C P EL PC  + T S  PS+ CC+KV + R C C Y KNP  RPY+ 
Sbjct: 20 LVEMSPMAEAVTCSPVELSPCLGAITSSSPPSTTCCQKVREQRPCLCGYLKNPSLRPYVN 79

Query: 70 YDATQRIISDCGVAIPTC 88
             ++R+ S CGV  PTC
Sbjct: 80 SPGSRRVASSCGVPFPTC 97

[Close]

BLAST of CSPI01G34770 vs. NCBI nr
Match: gi|672118215|ref|XP_008782311.1| (PREDICTED: non-specific lipid-transfer protein 2-like [Phoenix dactylifera])

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 1


Query: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTR 65
          LL +++N+   +KA  C+P EL PC  +   S  P+SACC K+   + C+C+Y+KNP  R
Sbjct: 13 LLGLLLNQAPTTKAATCNPSELSPCAGAILRSSPPTSACCAKLKAQQPCFCQYTKNPSLR 72

Query: 66 PYLKYDATQRIISDCGVAIPTC 88
           Y+    ++++++ CGV+IP C
Sbjct: 73 GYINSPNSRKVVAACGVSIPRC 94

The following BLAST results are available for this feature:

BLAST of CSPI01G34770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLTP_VIGUN	6.2e-12	37.18	Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=...	[more]
NLTP2_PRUAR	8.4e-09	35.29	Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1	[more]
NLTPX_ORYSI	2.4e-08	30.30	Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=...	[more]
NLTPX_ORYSJ	2.4e-08	30.30	Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 P...	[more]
NLTP2_APIGA	9.2e-08	34.92	Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=...	[more]

BLAST of CSPI01G34770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3W7_CUCSA	2.3e-45	98.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G711160 PE=4 SV=1	[more]
A0A0B2QIV0_GLYSO	1.8e-13	43.59	Putative non-specific lipid-transfer protein AKCS9 OS=Glycine soja GN=glysoja_03...	[more]
I1N5L5_SOYBN	1.8e-13	43.59	Uncharacterized protein OS=Glycine max GN=GLYMA_19G002300 PE=4 SV=1	[more]
A0A067FIG1_CITSI	6.7e-13	39.29	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034237mg PE=4 SV=1	[more]
V4SY21_9ROSI	6.7e-13	39.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013188mg PE=4 SV=1	[more]

BLAST of CSPI01G34770 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73780.1	2.3e-12	34.52	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G18280.1	3.3e-11	35.21	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G48750.1	7.3e-11	30.38	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G43667.1	1.8e-09	34.29	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G38160.1	2.3e-09	35.29	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of CSPI01G34770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211810\|gb\|KGN66906.1\|	3.3e-45	98.85	hypothetical protein Csa_1G711160 [Cucumis sativus]	[more]
gi\|659118474\|ref\|XP_008459140.1\|	1.0e-35	81.52	PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis melo]	[more]
gi\|747042034\|ref\|XP_011076327.1\|	1.9e-13	37.80	PREDICTED: non-specific lipid-transfer protein 2-like [Sesamum indicum]	[more]
gi\|734371828\|gb\|KHN19692.1\|	2.5e-13	43.59	Putative non-specific lipid-transfer protein AKCS9 [Glycine soja]	[more]
gi\|672118215\|ref\|XP_008782311.1\|	2.5e-13	39.02	PREDICTED: non-specific lipid-transfer protein 2-like [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G34770.1	CSPI01G34770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 8..85 score: 1.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 22..87 score: 5.59
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 21..87 score: 5.2
None	No IPR available	PANTHER	PTHR33214	FAMILY NOT NAMED	coord: 6..87 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G34770	Csa1G711160	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G34770	Lsi02G010360	Bottle gourd (USVL1VR-Ls)	cpilsiB026
CSPI01G34770	MELO3C021798.2	Melon (DHL92) v3.6.1	cpimedB030
CSPI01G34770	CsaV3_1G046630	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G34770	Bhi08G000772	Wax gourd	cpiwgoB031
CSPI01G34770	Cucsa.236570	Cucumber (Gy14) v1	cgycpiB352

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G34770	Cucurbita moschata (Rifu)	cmocpiB196
CSPI01G34770	Cucurbita moschata (Rifu)	cmocpiB390
CSPI01G34770	Melon (DHL92) v3.5.1	cpimeB013
CSPI01G34770	Watermelon (Charleston Gray)	cpiwcgB026
CSPI01G34770	Cucurbita pepo (Zucchini)	cpecpiB019
CSPI01G34770	Cucurbita pepo (Zucchini)	cpecpiB520
CSPI01G34770	Bottle gourd (USVL1VR-Ls)	cpilsiB034
CSPI01G34770	Melon (DHL92) v3.6.1	cpimedB013
CSPI01G34770	Melon (DHL92) v3.6.1	cpimedB022
CSPI01G34770	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G34770	Silver-seed gourd	carcpiB0433
CSPI01G34770	Silver-seed gourd	carcpiB0487
CSPI01G34770	Watermelon (97103) v2	cpiwmbB011
CSPI01G34770	Cucurbita maxima (Rimu)	cmacpiB209
CSPI01G34770	Cucurbita maxima (Rimu)	cmacpiB404