Cucsa.234830 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.234830
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent DNA helicase recG
Locationscaffold02004 : 57337 .. 58111 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCATGATGATTGTATTGAGAATGGACAATACAACAATCGATCCAATTCAATTCCATCAGATCCAGACGAAGATTGTGATGTTTCTAAAGCATGTAAAAAaTTTCCATCCATCAAGTTGGGAAGTTCTCCTCCAGTTGAATTATTTGATGGCTCGACATGCCATTCAGATATTGTGAGTTTTTTAGAAGCTAAAAGCGGCAAGAATTTTTTTCTGAATTCAACTTGTGAAGAGTGTGAACAAGATAGTCTGGATGGAACCTTGTCTTCTCTGTACCCTGTCCTTCCAGATGTAGAAAATTCTTCAGTTAGAGAAGAATATACTTTGCCCACTGGTTCATCCCTTCTGCCTATAAATATTGAGACTGGAACAATTTTGAGTAATCCAACAGTAGATGGAGATTCTTCAAAAAAGAAGTCAGAATCAGAAAATAAGGGAGTATCTGGAAGGTCATTTCTTGACCAATCAGTTGGTTGCATATCTGGCTTAAGTAAGAGGCACCAGCGCCAGCTTGAAGATAGTGGCTTTCACACGGCAAGTTTTTGTTGTTTCTATTATTTTTCTCTAATTTGAAGTATAGATGAATGAAGCCTCAAATACACATATATATAATCATTTAATTTGTGTTGGACTAATTCTTTTCCTTTCATTTTCTAGTTAGGCAAATTACTACATCATTTTCCTCGGACCTATGCCGATTTACGGAATCCTCAGGTTCATATTGATGATGGACAATACATAATATTTATAGGAAAAGTCTTGTCATCAAGGT

mRNA sequence

ATGGCTCATGATGATTGTATTGAGAATGGACAATACAACAATCGATCCAATTCAATTCCATCAGATCCAGACGAAGATTGTGATGTTTCTAAAGCATGTAAAAAATTTCCATCCATCAAGTTGGGAAGTTCTCCTCCAGTTGAATTATTTGATGGCTCGACATGCCATTCAGATATTGTGAGTTTTTTAGAAGCTAAAAGCGGCAAGAATTTTTTTCTGAATTCAACTTGTGAAGAGTGTGAACAAGATAGTCTGGATGGAACCTTGTCTTCTCTGTACCCTGTCCTTCCAGATGTAGAAAATTCTTCAGTTAGAGAAGAATATACTTTGCCCACTGGTTCATCCCTTCTGCCTATAAATATTGAGACTGGAACAATTTTGAGTAATCCAACAGTAGATGGAGATTCTTCAAAAAAGAAGTCAGAATCAGAAAATAAGGGAGTATCTGGAAGGTCATTTCTTGACCAATCAGTTGGTTGCATATCTGGCTTAAGTAAGAGGCACCAGCGCCAGCTTGAAGATAGTGGCTTTCACACGTTAGGCAAATTACTACATCATTTTCCTCGGACCTATGCCGATTTACGGAATCCTCAGGTTCATATTGATGATGGACAATACATAATATTTATAGGAAAAGTCTTGTCATCAAGGT

Coding sequence (CDS)

ATGGCTCATGATGATTGTATTGAGAATGGACAATACAACAATCGATCCAATTCAATTCCATCAGATCCAGACGAAGATTGTGATGTTTCTAAAGCATGTAAAAAaTTTCCATCCATCAAGTTGGGAAGTTCTCCTCCAGTTGAATTATTTGATGGCTCGACATGCCATTCAGATATTGTGAGTTTTTTAGAAGCTAAAAGCGGCAAGAATTTTTTTCTGAATTCAACTTGTGAAGAGTGTGAACAAGATAGTCTGGATGGAACCTTGTCTTCTCTGTACCCTGTCCTTCCAGATGTAGAAAATTCTTCAGTTAGAGAAGAATATACTTTGCCCACTGGTTCATCCCTTCTGCCTATAAATATTGAGACTGGAACAATTTTGAGTAATCCAACAGTAGATGGAGATTCTTCAAAAAAGAAGTCAGAATCAGAAAATAAGGGAGTATCTGGAAGGTCATTTCTTGACCAATCAGTTGGTTGCATATCTGGCTTAAGTAAGAGGCACCAGCGCCAGCTTGAAGATAGTGGCTTTCACACGTTAGGCAAATTACTACATCATTTTCCTCGGACCTATGCCGATTTACGGAATCCTCAGGTTCATATTGATGATGGACAATACATAATATTTATAGGAAAAGTCTTGTCATCAAGGT

Protein sequence

MAHDDCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLEAKSGKNFFLNSTCEECEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPINIETGTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTLGKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSRX
Homology
[Close]
BLAST of Cucsa.234830 vs. Swiss-Prot
Match: RECG_ARATH (ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana GN=RECG PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 86/199 (43.22%), Postives = 114/199 (57.29%), Query Frame = 1 

Query: 21  SDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLEAKSGKNFFLNSTCEE- 80
           SD     D+  ACK+FPSI LG S PVEL+  S  + +  S L+  +  N FL +     
Sbjct: 98  SDEQVKKDLVLACKRFPSIILGDSRPVELYSNSKSYGESSSILKTPTD-NSFLPTPMHGG 157

Query: 81  -CEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPINIETGTILSNPTVDGDSSK 140
             + D+L  TLSS  P L   ++SS   E  L  GSS               T    +S+
Sbjct: 158 WFDPDNLSRTLSSFCPELLQNDDSSDPREDILDDGSSF--------------TSKTATSE 217

Query: 141 KKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTLGKLLHHFPRTYADLRNPQ 200
            ++ S++   + R FL  S+  + GLSKRH  QL+  GFHT+ KLLHHFPRTYADL+N Q
Sbjct: 218 VEATSDDVFAAQR-FLATSIDSMPGLSKRHSNQLDSCGFHTMKKLLHHFPRTYADLQNAQ 277

Query: 201 VHIDDGQYIIFIGKVLSSR 218
           V I+DGQY+IF+GKVLSS+
Sbjct: 278 VDIEDGQYLIFVGKVLSSK 280

[Close]
BLAST of Cucsa.234830 vs. TrEMBL
Match: F6HFI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04880 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.2e-40
Identity = 103/219 (47.03%), Postives = 134/219 (61.19%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D IEN +    S+    D   + D+S AC+KFPSI LG+SPPVEL+D + CHSD+ S L 
Sbjct: 89  DLIENERVQKESDMNLKDEINNVDISLACRKFPSIILGNSPPVELYDENKCHSDVRSLLA 148

Query: 65  AKSGKNFFLNSTCEECE-QDSLDGTLSSLYPVLPDVENSSVREEY--TLPTGSSLLPINI 124
           A+  + F  +S  E+ +  D    T  SL P LP++  S +R+E   TLP  S   P+ +
Sbjct: 149 AQICEEFLSSSGAEKWDGPDRFSETWPSLCPTLPNINASLLRKESSSTLPVSSQ--PLTM 208

Query: 125 ET---GTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFH 184
           ET     +L   TV+G  +    ES+N        LD+S+  I GL KRH RQLE+ GFH
Sbjct: 209 ETKEKSDVLV--TVEGPPANMVLESQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFH 268

Query: 185 TLGKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           TL KLL HFPRTYADL+N  + IDDGQY+I IGK+LSSR
Sbjct: 269 TLRKLLQHFPRTYADLKNALIGIDDGQYMISIGKILSSR 303

[Close]
BLAST of Cucsa.234830 vs. TrEMBL
Match: A0A0S3T1G0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G031100 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 91/215 (42.33%), Postives = 129/215 (60.00%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D I NG    +S   P D  +D D+S  CK+FPSI LGS+  V+L+DG+T  S+ ++ L 
Sbjct: 70  DLIGNGSDEMKSEMSPKDALDDVDISLICKRFPSITLGSAARVDLYDGTTSCSETMNSLT 129

Query: 65  AKSGKNFFLNSTCEECEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPINIETG 124
            ++ +N F NS+     Q +L     SLY     V +S+  ++       SLLP  + + 
Sbjct: 130 TENFENCFSNSSETRWVQSALSEEWPSLYVKHSSVSSSTSGKD-------SLLPDLMSSI 189

Query: 125 TILSNPTVDGDSSKKK--SESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTLGK 184
              ++  + G+  + K   ES+        FLD+S+ CI GLSKRH R+LED GFHTL K
Sbjct: 190 QEKNSDQITGEDCQMKVAMESQPNPTLSELFLDKSINCIPGLSKRHYRKLEDCGFHTLRK 249

Query: 185 LLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           LL HFPR+YA+++N  + IDDGQY+IF+GKVLSSR
Sbjct: 250 LLLHFPRSYANMQNGHIKIDDGQYLIFVGKVLSSR 277

[Close]
BLAST of Cucsa.234830 vs. TrEMBL
Match: A0A0B2QAH3_GLYSO (ATP-dependent DNA helicase recG (Fragment) OS=Glycine soja GN=glysoja_033723 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 91/216 (42.13%), Postives = 127/216 (58.80%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D I NG    +S   P D  +D D+S  CK+FPSI LG +P V+L+DG+   S+ ++ L 
Sbjct: 102 DLIGNGSGEKKSKMSPKDALDDLDISLICKRFPSITLGYAPRVDLYDGTRSCSETMNSLA 161

Query: 65  AKSGKNFFLNSTCEECEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPINIETG 124
            ++ +N F +S      Q +L     SLY     + +S++ EE + P   S LP ++   
Sbjct: 162 TENFENSFSDSLEASWVQSTLSEERPSLYASHSSLTSSTLGEEDSCP---SPLPPDLTPS 221

Query: 125 TI---LSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTLG 184
                L   T +    K + ES++       FLD+SV CI GLSKRH +QL++ GFHTL 
Sbjct: 222 IYEEKLDQITREDSQMKVRMESQSNSTPSELFLDKSVSCIPGLSKRHYQQLDNYGFHTLR 281

Query: 185 KLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           KLL HFPR+YA+L+N    IDDGQY+IF+GKVLSSR
Sbjct: 282 KLLLHFPRSYANLQNAHAKIDDGQYLIFVGKVLSSR 314

[Close]
BLAST of Cucsa.234830 vs. TrEMBL
Match: A0A061E7H0_THECC (DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_010869 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-35
Identity = 101/242 (41.74%), Postives = 136/242 (56.20%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D IEN + + + +    D  +D ++S ACK+FPSI LGSSPPVEL+D +T  S I   L 
Sbjct: 98  DLIENERPDEQPDRNLKDATDDFELSLACKRFPSITLGSSPPVELYDETTSSSRIRGLLA 157

Query: 65  AKSGKNFFLNSTCEE-CEQDSLDGTLSSLYPVLPDVENSSVREEYT----LPTGSSLLPI 124
           A   + FF NS  E+    + L  T  SLY  L +  +S V EE T      + S+ L  
Sbjct: 158 A---QRFFSNSMDEKWVNPNGLCETWPSLYQPLSEAGSSIVVEESTDNLHQSSWSTTLES 217

Query: 125 NIETGTILS------------------------NPTVDGDSSKKKSESENKGVSGRSFLD 184
             +TG +++                          T +  SSK   E ++   +   FLD
Sbjct: 218 EDKTGHLVTVEKSTGNLHQSSWSMTSEFEGKSDRLTEEESSSKVGIEPQSDAATFVLFLD 277

Query: 185 QSVGCISGLSKRHQRQLEDSGFHTLGKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLS 218
           +S+ CI GLSKRH  QLE+ GF+TL KLLHHFPRTYADL+N Q+ I+DGQY+IF+GK+LS
Sbjct: 278 RSISCIPGLSKRHSHQLEECGFYTLRKLLHHFPRTYADLQNAQIEINDGQYLIFVGKILS 336

[Close]
BLAST of Cucsa.234830 vs. TrEMBL
Match: A0A061E7L6_THECC (DEAD/DEAH box RNA helicase family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_010869 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-35
Identity = 101/242 (41.74%), Postives = 136/242 (56.20%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D IEN + + + +    D  +D ++S ACK+FPSI LGSSPPVEL+D +T  S I   L 
Sbjct: 98  DLIENERPDEQPDRNLKDATDDFELSLACKRFPSITLGSSPPVELYDETTSSSRIRGLLA 157

Query: 65  AKSGKNFFLNSTCEE-CEQDSLDGTLSSLYPVLPDVENSSVREEYT----LPTGSSLLPI 124
           A   + FF NS  E+    + L  T  SLY  L +  +S V EE T      + S+ L  
Sbjct: 158 A---QRFFSNSMDEKWVNPNGLCETWPSLYQPLSEAGSSIVVEESTDNLHQSSWSTTLES 217

Query: 125 NIETGTILS------------------------NPTVDGDSSKKKSESENKGVSGRSFLD 184
             +TG +++                          T +  SSK   E ++   +   FLD
Sbjct: 218 EDKTGHLVTVEKSTGNLHQSSWSMTSEFEGKSDRLTEEESSSKVGIEPQSDAATFVLFLD 277

Query: 185 QSVGCISGLSKRHQRQLEDSGFHTLGKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLS 218
           +S+ CI GLSKRH  QLE+ GF+TL KLLHHFPRTYADL+N Q+ I+DGQY+IF+GK+LS
Sbjct: 278 RSISCIPGLSKRHSHQLEECGFYTLRKLLHHFPRTYADLQNAQIEINDGQYLIFVGKILS 336

[Close]
BLAST of Cucsa.234830 vs. TAIR10
Match: AT2G01440.1 (AT2G01440.1 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 86/199 (43.22%), Postives = 114/199 (57.29%), Query Frame = 1 

Query: 21  SDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLEAKSGKNFFLNSTCEE- 80
           SD     D+  ACK+FPSI LG S PVEL+  S  + +  S L+  +  N FL +     
Sbjct: 98  SDEQVKKDLVLACKRFPSIILGDSRPVELYSNSKSYGESSSILKTPTD-NSFLPTPMHGG 157

Query: 81  -CEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPINIETGTILSNPTVDGDSSK 140
             + D+L  TLSS  P L   ++SS   E  L  GSS               T    +S+
Sbjct: 158 WFDPDNLSRTLSSFCPELLQNDDSSDPREDILDDGSSF--------------TSKTATSE 217

Query: 141 KKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTLGKLLHHFPRTYADLRNPQ 200
            ++ S++   + R FL  S+  + GLSKRH  QL+  GFHT+ KLLHHFPRTYADL+N Q
Sbjct: 218 VEATSDDVFAAQR-FLATSIDSMPGLSKRHSNQLDSCGFHTMKKLLHHFPRTYADLQNAQ 277

Query: 201 VHIDDGQYIIFIGKVLSSR 218
           V I+DGQY+IF+GKVLSS+
Sbjct: 278 VDIEDGQYLIFVGKVLSSK 280

[Close]
BLAST of Cucsa.234830 vs. NCBI nr
Match: gi|778730665|ref|XP_011659838.1| (PREDICTED: uncharacterized protein LOC101221994 [Cucumis sativus])

HSP 1 Score: 444.9 bits (1143), Expect = 8.1e-122
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1 

Query: 1   MAHDDCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIV 60
           MAHDDCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIV
Sbjct: 67  MAHDDCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIV 126

Query: 61  SFLEAKSGKNFFLNSTCEECEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPIN 120
           SFLEAKSGKNFFLNSTCEECEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPIN
Sbjct: 127 SFLEAKSGKNFFLNSTCEECEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPIN 186

Query: 121 IETGTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTL 180
           IETGTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTL
Sbjct: 187 IETGTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTL 246

Query: 181 GKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           GKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR
Sbjct: 247 GKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 283

[Close]
BLAST of Cucsa.234830 vs. NCBI nr
Match: gi|659109546|ref|XP_008454766.1| (PREDICTED: uncharacterized protein LOC103495086 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.2e-106
Identity = 193/217 (88.94%), Postives = 199/217 (91.71%), Query Frame = 1 

Query: 1   MAHDDCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIV 60
           MAHDDCIENGQYNN+SNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGS CHSDI 
Sbjct: 67  MAHDDCIENGQYNNQSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSACHSDIA 126

Query: 61  SFLEAKSGKNFFLNSTCEECEQDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPIN 120
           SFL AKS KNF+LNSTCEEC QD  D TL SLYP LPDV NSSV EEYTL TGSSLLP+N
Sbjct: 127 SFLAAKSSKNFYLNSTCEECVQDE-DRTLPSLYPALPDVGNSSVSEEYTLTTGSSLLPMN 186

Query: 121 IETGTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTL 180
           IETGTI SNP V+GDSSKKKS SEN  VSGRSFLDQSVGCISGLSKRHQRQL+DSGFHTL
Sbjct: 187 IETGTISSNPAVEGDSSKKKSTSENTAVSGRSFLDQSVGCISGLSKRHQRQLDDSGFHTL 246

Query: 181 GKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           GKLLHHFPRTYADLRNPQVHIDDGQYIIF+GKVLSSR
Sbjct: 247 GKLLHHFPRTYADLRNPQVHIDDGQYIIFVGKVLSSR 282

[Close]
BLAST of Cucsa.234830 vs. NCBI nr
Match: gi|731369649|ref|XP_010657288.1| (PREDICTED: uncharacterized protein LOC100252614 isoform X1 [Vitis vinifera])

HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40
Identity = 103/219 (47.03%), Postives = 134/219 (61.19%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D IEN +    S+    D   + D+S AC+KFPSI LG+SPPVEL+D + CHSD+ S L 
Sbjct: 98  DLIENERVQKESDMNLKDEINNVDISLACRKFPSIILGNSPPVELYDENKCHSDVRSLLA 157

Query: 65  AKSGKNFFLNSTCEECE-QDSLDGTLSSLYPVLPDVENSSVREEY--TLPTGSSLLPINI 124
           A+  + F  +S  E+ +  D    T  SL P LP++  S +R+E   TLP  S   P+ +
Sbjct: 158 AQICEEFLSSSGAEKWDGPDRFSETWPSLCPTLPNINASLLRKESSSTLPVSSQ--PLTM 217

Query: 125 ET---GTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFH 184
           ET     +L   TV+G  +    ES+N        LD+S+  I GL KRH RQLE+ GFH
Sbjct: 218 ETKEKSDVLV--TVEGPPANMVLESQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFH 277

Query: 185 TLGKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           TL KLL HFPRTYADL+N  + IDDGQY+I IGK+LSSR
Sbjct: 278 TLRKLLQHFPRTYADLKNALIGIDDGQYMISIGKILSSR 312

[Close]
BLAST of Cucsa.234830 vs. NCBI nr
Match: gi|731369655|ref|XP_010657359.1| (PREDICTED: uncharacterized protein LOC100252614 isoform X2 [Vitis vinifera])

HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40
Identity = 103/219 (47.03%), Postives = 134/219 (61.19%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D IEN +    S+    D   + D+S AC+KFPSI LG+SPPVEL+D + CHSD+ S L 
Sbjct: 59  DLIENERVQKESDMNLKDEINNVDISLACRKFPSIILGNSPPVELYDENKCHSDVRSLLA 118

Query: 65  AKSGKNFFLNSTCEECE-QDSLDGTLSSLYPVLPDVENSSVREEY--TLPTGSSLLPINI 124
           A+  + F  +S  E+ +  D    T  SL P LP++  S +R+E   TLP  S   P+ +
Sbjct: 119 AQICEEFLSSSGAEKWDGPDRFSETWPSLCPTLPNINASLLRKESSSTLPVSSQ--PLTM 178

Query: 125 ET---GTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFH 184
           ET     +L   TV+G  +    ES+N        LD+S+  I GL KRH RQLE+ GFH
Sbjct: 179 ETKEKSDVLV--TVEGPPANMVLESQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFH 238

Query: 185 TLGKLLHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           TL KLL HFPRTYADL+N  + IDDGQY+I IGK+LSSR
Sbjct: 239 TLRKLLQHFPRTYADLKNALIGIDDGQYMISIGKILSSR 273

[Close]
BLAST of Cucsa.234830 vs. NCBI nr
Match: gi|297737705|emb|CBI26906.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 97/214 (45.33%), Postives = 126/214 (58.88%), Query Frame = 1 

Query: 5   DCIENGQYNNRSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSTCHSDIVSFLE 64
           D IEN +    S+    D   + D+S AC+KFPSI LG+SPPVEL+D + CHSD+ S L 
Sbjct: 98  DLIENERVQKESDMNLKDEINNVDISLACRKFPSIILGNSPPVELYDENKCHSDVRSLLA 157

Query: 65  AKSGKNFFLNSTCEECE-QDSLDGTLSSLYPVLPDVENSSVREEYTLPTGSSLLPINIET 124
           A+  + F  +S  E+ +  D    T  SL P LP++  S +R+E      S +L      
Sbjct: 158 AQICEEFLSSSGAEKWDGPDRFSETWPSLCPTLPNINASLLRKEKK----SDVLV----- 217

Query: 125 GTILSNPTVDGDSSKKKSESENKGVSGRSFLDQSVGCISGLSKRHQRQLEDSGFHTLGKL 184
                  TV+G  +    ES+N        LD+S+  I GL KRH RQLE+ GFHTL KL
Sbjct: 218 -------TVEGPPANMVLESQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFHTLRKL 277

Query: 185 LHHFPRTYADLRNPQVHIDDGQYIIFIGKVLSSR 218
           L HFPRTYADL+N  + IDDGQY+I IGK+LSSR
Sbjct: 278 LQHFPRTYADLKNALIGIDDGQYMISIGKILSSR 295

The following BLAST results are available for this feature:
BLAST of Cucsa.234830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RECG_ARATH3.3e-3043.22ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana G... [more]
BLAST of Cucsa.234830 vs. TrEMBL
Match NameE-valueIdentityDescription
F6HFI2_VITVI3.2e-4047.03Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04880 PE=4 SV=... [more]
A0A0S3T1G0_PHAAN1.4e-3542.33Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G031100 PE=... [more]
A0A0B2QAH3_GLYSO1.4e-3542.13ATP-dependent DNA helicase recG (Fragment) OS=Glycine soja GN=glysoja_033723 PE=... [more]
A0A061E7H0_THECC3.1e-3541.74DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_01... [more]
A0A061E7L6_THECC3.1e-3541.74DEAD/DEAH box RNA helicase family protein isoform 2 (Fragment) OS=Theobroma caca... [more]
BLAST of Cucsa.234830 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01440.11.9e-3143.22 DEAD/DEAH box RNA helicase family protein [more]
BLAST of Cucsa.234830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730665|ref|XP_011659838.1|8.1e-122100.00PREDICTED: uncharacterized protein LOC101221994 [Cucumis sativus][more]
gi|659109546|ref|XP_008454766.1|2.2e-10688.94PREDICTED: uncharacterized protein LOC103495086 [Cucumis melo][more]
gi|731369649|ref|XP_010657288.1|4.6e-4047.03PREDICTED: uncharacterized protein LOC100252614 isoform X1 [Vitis vinifera][more]
gi|731369655|ref|XP_010657359.1|4.6e-4047.03PREDICTED: uncharacterized protein LOC100252614 isoform X2 [Vitis vinifera][more]
gi|297737705|emb|CBI26906.3|2.1e-3745.33unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.234830.1Cucsa.234830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 154..216
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.234830CsaUNG014590Cucumber (Chinese Long) v2cgycuB332
Cucsa.234830MELO3C018324Melon (DHL92) v3.5.1cgymeB395
Cucsa.234830CSPI04G27740Wild cucumber (PI 183967)cgycpiB347
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.234830Watermelon (Charleston Gray)cgywcgB410