Cucsa.204860 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.204860
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NifU-like protein 1
Location	scaffold01416 : 39676 .. 42075 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAACTACAACCTCATCATCGCCTAGATTCCTCTTCGTTTCTTCTTCATTAATGGCGTCCTTAACTACCTCCGGCCTCCTCAAAACCCCTCTTAAGAATTCCCAATCTCCTGCAAATTCTCTCCAATATCCACCTTTTGCTTATGGGCAACATCAACTGCCCGTTTCCCTCAAAAGGGCTTTTCCCGGACGAGCCATTAGAGCTTCACCTTCGAATTCGGGTCCATCCACGACCTCCTCACCAGGGCTGTACTCCGCTCAGAAATTTGAATTGACCATTGGAAACGTGGACTTGGTTCTTGAGGACGTAAGGCCTTATCTAATTGCAGATGGAGGAAATGTCGATGTTGTTTCTGTTGAAGATGGAGTAGTTTCCCTCAAACTCGTTGGTGGGTAGATTTCTTGTCTCGTTGAATTGAATGGGTTTGTTTTAATTTCCCTTGTTAATTTAATTTTTTGTGTTGAAATTTTTGTTACTTATAAATTGGTTGTTGTTGGGGTATGTTCTTTGGTGTTTCTATAGTTTAGCAAATTGTGTTGAATATCTTTTACACATTATGGTATTTAGTAGTATCTGCACTTTAGAGATTTGAGTCTAATTCATTTCTTTCATCGAAGCAATCCTGGGATCGTATGGTTTAGGACAAAGTTGATATCTTTGTGATTCTCGGTCTGAGTATGCCCCTTCAGCCCATCTCTTTTTACATAGCCAAATAGTTGGTGTATGCTTTCTCGACGCTGGCCCGATAGAAGTGATTCCTTTTTCTCAAAAAGAATGGTCTCTTTCTTAGCATTACTGTAACCCATTTGATCTTAGTCGTCTTGTGTGGAAGGAGCGAGATGACAGAGATTTTGCTCTTCTCACCCCTGTCCGACCACCCGATTGGTGAAGACTCGGAACAAACCACCCCGCTTTGGGAGACAACGAAGACTTTACTCGATGTCTTGATCCATCCGTAGTCTGCTAATCTGATCCCAACGTCTTTAATTCTGACGAGCTTGTCTCGGAGAGATCTCTATCTTTTGTTTGTTACACAACACTGAAGGCTCCACTAGAAAAGGAAGGAAAAAGGAAAATACCTCCAATGAGAAATCTCAAGATCAAGATTAGTAGTGCTGCAGTTCTATTTACAATCTTAAACTTTCCTAACTACAATCTTCCTCCATTAGCACTGAATCTATTGGAAATTTTGAACAGTTTAGACTTGGGCAGATGGATATGATTTTCCTTTCCTTATATGAGGGTCTTTCCAATGAAAAGGATTTACCAGAGAATAGATGATTTGATATCTATCTTTAAAGAAAACCACGAAAAGGATCCTTAATTTCACTTGTTTGTGAACACTTTTAACCAATCTTGTGGGAGATTTGGTATATATCTAACAGGAATGTTTCTCAGGACATGGGTGGGGTTCTCATGACATTTGAAGGGACTGCAGACTGATGTGGCCTTTCGGTTTCTTTCCTGCATATACTAGTTGGAGTACATTTGTTTTGTTGTCTTGGTCTAGGTAAGTTTTGGACAGCACCATCATCTTGTACATGTTACTGGTGTGTTTTATCTGTTTCTTATCAAGTAAGGTGAAAAAGGTCTCCTTGAACTAAATGGCAAAAGGAAGTCTTGTAACCCTCACTTTCATCGAAAAGGGTGTGAGTAAGAACTTTGTTGATTTGATGTTTAACTGCTTTGTATTCCCATGAAGTCATGAACAAAAAGTAATAATGATAAACATTTTTAACTAAAAATGTTTGAATCGATCTTCAGGAGCATGCGGTAGCTGCCCTAGCTCAACAACGACCATGAAGATGGGGATCGAACGTGTACTAAAGGAGAAGTTTGGAGATTCAGTGAAGGAAATATGCCAAGTATATGATGAAGAACCAAAGGAGACTACACCTGAGGTGAGTTTTCTGCAGACGAGCGAATACAAAATTGGCTGATGTCAAAATTCAAACAAAAACAAAGTGAGCTGATTTAGTTAGGCAATTTAGTATTAATCCTGGATGTTGCACAAATTCAGGCAGTAAACAGTCACCTTGACATATTGAGGCCAGCCATAAGGAACTACGGTGGGAGCGTGGAAGTAATATCAATTAATGGTGGCGATTGCCTGGTCAAGTATGAGGGTCCTGAATCTATTGGTACAGGAGTTAAAGCAGCCATTAAGGAGAGATTCCCAGATATTACAAACGTTGTGTTTTCAAGCTAACCTTTCCTCAGGTTTCTGAAGCAAAGAGAATATGTATAGCTGCTTCATTTATTGAAAAGTTGGTGCTCATCTTTTTCATAGGCATGTAATGATCTCTTTTCCAATAAATGTTATATATTATTGATAGCCATATCTTATGCTCATAGAAAGGAAGTGCACTTATTTTAAAAGGGTAAACATTGTTCACACA

mRNA sequence

AACAACTACAACCTCATCATCGCCTAGATTCCTCTTCGTTTCTTCTTCATTAATGGCGTCCTTAACTACCTCCGGCCTCCTCAAAACCCCTCTTAAGAATTCCCAATCTCCTGCAAATTCTCTCCAATATCCACCTTTTGCTTATGGGCAACATCAACTGCCCGTTTCCCTCAAAAGGGCTTTTCCCGGACGAGCCATTAGAGCTTCACCTTCGAATTCGGGTCCATCCACGACCTCCTCACCAGGGCTGTACTCCGCTCAGAAATTTGAATTGACCATTGGAAACGTGGACTTGGTTCTTGAGGACGTAAGGCCTTATCTAATTGCAGATGGAGGAAATGTCGATGTTGTTTCTGTTGAAGATGGAGTAGTTTCCCTCAAACTCGTTGGAGCATGCGGTAGCTGCCCTAGCTCAACAACGACCATGAAGATGGGGATCGAACGTGTACTAAAGGAGAAGTTTGGAGATTCAGTGAAGGAAATATGCCAAGTATATGATGAAGAACCAAAGGAGACTACACCTGAGGCAGTAAACAGTCACCTTGACATATTGAGGCCAGCCATAAGGAACTACGGTGGGAGCGTGGAAGTAATATCAATTAATGGTGGCGATTGCCTGGTCAAGTATGAGGGTCCTGAATCTATTGGTACAGGAGTTAAAGCAGCCATTAAGGAGAGATTCCCAGATATTACAAACGTTGTGTTTTCAAGCTAACCTTTCCTCAGGTTTCTGAAGCAAAGAGAATATGTATAGCTGCTTCATTTATTGAAAAGTTGGTGCTCATCTTTTTCATAGGCATGTAATGATCTCTTTTCCAATAAATGTTATATATTATTGATAGCCATATCTTATGCTCATAGAAAGGAAGTGCACTTATTTTAAAAGGGTAAACATTGTTCACACA

Coding sequence (CDS)

ATGGCGTCCTTAACTACCTCCGGCCTCCTCAAAACCCCTCTTAAGAATTCCCAATCTCCTGCAAATTCTCTCCAATATCCACCTTTTGCTTATGGGCAACATCAACTGCCCGTTTCCCTCAAAAGGGCTTTTCCCGGACGAGCCATTAGAGCTTCACCTTCGAATTCGGGTCCATCCACGACCTCCTCACCAGGGCTGTACTCCGCTCAGAAATTTGAATTGACCATTGGAAACGTGGACTTGGTTCTTGAGGACGTAAGGCCTTATCTAATTGCAGATGGAGGAAATGTCGATGTTGTTTCTGTTGAAGATGGAGTAGTTTCCCTCAAACTCGTTGGAGCATGCGGTAGCTGCCCTAGCTCAACAACGACCATGAAGATGGGGATCGAACGTGTACTAAAGGAGAAGTTTGGAGATTCAGTGAAGGAAATATGCCAAGTATATGATGAAGAACCAAAGGAGACTACACCTGAGGCAGTAAACAGTCACCTTGACATATTGAGGCCAGCCATAAGGAACTACGGTGGGAGCGTGGAAGTAATATCAATTAATGGTGGCGATTGCCTGGTCAAGTATGAGGGTCCTGAATCTATTGGTACAGGAGTTAAAGCAGCCATTAAGGAGAGATTCCCAGATATTACAAACGTTGTGTTTTCAAGCTAA

Protein sequence

MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPSTTSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPSSTTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEVISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS*

Homology

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BLAST of Cucsa.204860 vs. Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.4e-66
Identity = 142/230 (61.74%), Postives = 169/230 (73.48%), Query Frame = 1


Query: 1   MASLTTS--GLLKTPLKNSQS----PANSLQYPPFA-YGQHQLPVSLKRAFPGRAIRASP 60
           MASL TS  G  +  +K+S +    P  S Q P F  +   +  +S    F   AI  S 
Sbjct: 2   MASLATSISGSFRILVKSSSTRNGFPVISDQNPSFVLFANKRRHISRTAIFHRSAISGSS 61

Query: 61  SNSGPSTTSS---PGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLK 120
                S  +S    GLYSAQ F+LT  NVDLVLEDVRP+LI+DGGNVDVVSVEDGVVSLK
Sbjct: 62  QGEKISPLASGVSSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLK 121

Query: 121 LVGACGSCPSSTTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPA 180
           L GAC SCPSS+TTM MGIERVLKEKFGD++K+I QV+DEE K+ T EAVN+HLDILRPA
Sbjct: 122 LQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPA 181

Query: 181 IRNYGGSVEVISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 221
           I+NYGGSVEV+S+ G DC+VKY GPESIG G++AAIKE+F DI+NV F+S
Sbjct: 182 IKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFTS 231

[Close]

BLAST of Cucsa.204860 vs. Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-20
Identity = 70/179 (39.11%), Postives = 98/179 (54.75%), Query Frame = 1


Query: 45  PGRAIRASPSNSGPSTT--SSPGL--YSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVV 104
           P   + A+P++  P     +  GL   +A +  LT GNV+ VL+ VRPYL ADGG+V + 
Sbjct: 42  PATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALH 101

Query: 105 SVEDGVVSLKLVGACGSCPSSTTTMKMGIERVLKEKFGDSVKEICQVYDEEP-KETTPEA 164
            +   VV LKL GACGSCPSS  T+K GIER L EK  D V  +  V D+E   E   E 
Sbjct: 102 EIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPD-VAAVEPVTDKETGLELNEEN 161

Query: 165 VNSHLDILRPAIRNY-GGSVEVISINGGDCLVKYEGPESIGTGVKAAI----KERFPDI 214
           V   L+ +RP +    GG ++ + I G    V+  GP ++   V+ A+    +E+ P I
Sbjct: 162 VEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSI 219

[Close]

BLAST of Cucsa.204860 vs. Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-19
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 1


Query: 74  LTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPSSTTTMKMGIERVL 133
           LT  NV+ VL+++RPYL++DGGNV +  ++  +V +KL GACGSCPSST TMKMGIER L
Sbjct: 85  LTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144

Query: 134 KEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRP-AIRNYGGSVEVISINGGDCLVKY 193
            EK  + V       +E   E   E +   L+ +RP  I    GS++++ I      ++ 
Sbjct: 145 MEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRI 204

Query: 194 EGPE----SIGTGVKAAIKERFPDITNV 217
            GP     ++   V   ++E+ P I  V
Sbjct: 205 TGPAAGVMTVRVAVTQKLREKIPSIAAV 232

[Close]

BLAST of Cucsa.204860 vs. Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-17
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 1


Query: 74  LTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPSSTTTMKMGIERVL 133
           LT  NV+ VL++VRP L+ADGGNV +  ++  VV LKL GACGSCPSS+ T+KMGIE  L
Sbjct: 84  LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143

Query: 134 KEKFGDSVKEICQVYDEEP--KETTPEAVNSHLDILRPAIRNY-GGSVEVISINGGDCLV 193
           ++K  + +  + Q  + E    E   E +   L  LRP +    GG +E++ I+G    V
Sbjct: 144 RDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKV 203

Query: 194 KYEGPESIGTGVKAAIKER 210
           +  GP +    V+ A+ ++
Sbjct: 204 RLTGPAAGVMTVRVALTQK 221

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BLAST of Cucsa.204860 vs. Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) GN=yutI PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 79  VDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPSSTTTMKMGIERVLKEKFG 138
           V  VL+ +RP+L+ DGG+ ++V V++G+V L+L+GACGSCPSST T+K GIER L E+  
Sbjct: 43  VQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEEV- 102

Query: 139 DSVKEICQVY 149
             V E+ QV+
Sbjct: 103 PGVVEVEQVF 111

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BLAST of Cucsa.204860 vs. TrEMBL
Match: A0A0A0KB98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G412870 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 9.2e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST
Sbjct: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS
Sbjct: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 221
           ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS
Sbjct: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 220

[Close]

BLAST of Cucsa.204860 vs. TrEMBL
Match: A0A140B480_PRUPE (NFU domain protein 1 OS=Prunus persica var. persica GN=NFU1 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.6e-79
Identity = 158/219 (72.15%), Postives = 179/219 (81.74%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLT +GL KTP   S+ PA S QYP   + Q     S    F   AIRAS + S  + 
Sbjct: 1   MASLTATGLPKTPTPFSKIPATSHQYPQSVFVQRHRLTSQGSIFVKSAIRAS-NPSAAAE 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           +SSPGLYSA+K+ELT+ NVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKL GACGSCPS
Sbjct: 61  SSSPGLYSAKKYELTVPNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLQGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGD++K+I QVYDEE KETT EAVN HLDILRPAI+N+GGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDALKDIQQVYDEENKETTVEAVNGHLDILRPAIKNFGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFS 220
           +S+ GGDC V Y GP+SIG+G+KAAIKE+FPDI NVVF+
Sbjct: 181 LSVEGGDCHVNYVGPDSIGSGIKAAIKEKFPDIVNVVFT 218

[Close]

BLAST of Cucsa.204860 vs. TrEMBL
Match: M5XUC8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011214mg PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.6e-79
Identity = 158/219 (72.15%), Postives = 179/219 (81.74%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLT +GL KTP   S+ PA S QYP   + Q     S    F   AIRAS + S  + 
Sbjct: 1   MASLTATGLPKTPTPFSKIPATSHQYPQSVFVQRHRLTSQGSIFVKSAIRAS-NPSAAAE 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           +SSPGLYSA+K+ELT+ NVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKL GACGSCPS
Sbjct: 61  SSSPGLYSAKKYELTVPNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLQGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGD++K+I QVYDEE KETT EAVN HLDILRPAI+N+GGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDALKDIQQVYDEENKETTVEAVNGHLDILRPAIKNFGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFS 220
           +S+ GGDC V Y GP+SIG+G+KAAIKE+FPDI NVVF+
Sbjct: 181 LSVEGGDCHVNYVGPDSIGSGIKAAIKEKFPDIVNVVFT 218

[Close]

BLAST of Cucsa.204860 vs. TrEMBL
Match: W9R6P7_9ROSA (NifU-like protein 1 OS=Morus notabilis GN=L484_018769 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.7e-78
Identity = 152/219 (69.41%), Postives = 176/219 (80.37%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLTT G+ K+P  +      S Q+P F   + +   S  +     AIRAS  +S   +
Sbjct: 1   MASLTTLGIPKSPTPSGDILLKSHQFPQFIPLKQRRITSQSKGLSKTAIRASNQSSTTGS 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           +SSPGLYSAQKF+LT  NVD VLEDVRPYLI+DGGNVDVVSVEDGV+SLKL GACGSCPS
Sbjct: 61  SSSPGLYSAQKFDLTAQNVDFVLEDVRPYLISDGGNVDVVSVEDGVISLKLQGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGD+VK+I QVYDEEPKET  EAVN HLDILRPAI+N+GGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDAVKDIRQVYDEEPKETAVEAVNGHLDILRPAIKNFGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFS 220
           +S+ G DC VKY+GPESIG+G+KAAIKE+FPDI NVVF+
Sbjct: 181 LSVEGEDCFVKYKGPESIGSGIKAAIKEKFPDIVNVVFT 219

[Close]

BLAST of Cucsa.204860 vs. TrEMBL
Match: B9RNA2_RICCO (Nitrogen fixation protein nifU, putative OS=Ricinus communis GN=RCOM_1345940 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.5e-72
Identity = 151/217 (69.59%), Postives = 172/217 (79.26%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASL  +   K P    + PAN+ +YP        + +  +      AI+A+ S +G   
Sbjct: 1   MASLAFTAPSKIPPYCPKIPANTHRYP------QSITMKTRVVLSKTAIKAT-SQTG--- 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           + SPGLYSAQKFELT  NVDLVLEDVRPYLIADGGNVDVVSVEDGV+SL+L GACGSCPS
Sbjct: 61  SQSPGLYSAQKFELTPENVDLVLEDVRPYLIADGGNVDVVSVEDGVISLQLQGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGDSVK+I QV DEE KETTPEAVN HLDILRPAI+NYGGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDSVKDIRQVNDEEVKETTPEAVNRHLDILRPAIKNYGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVV 218
           +SI  G+CLVKY GPESIG+G+KAAIKE+FP+ITNVV
Sbjct: 181 VSIESGECLVKYSGPESIGSGIKAAIKEKFPEITNVV 207

[Close]

BLAST of Cucsa.204860 vs. TAIR10
Match: AT4G01940.1 (AT4G01940.1 NFU domain protein 1)

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-67
Identity = 142/230 (61.74%), Postives = 169/230 (73.48%), Query Frame = 1


Query: 1   MASLTTS--GLLKTPLKNSQS----PANSLQYPPFA-YGQHQLPVSLKRAFPGRAIRASP 60
           MASL TS  G  +  +K+S +    P  S Q P F  +   +  +S    F   AI  S 
Sbjct: 2   MASLATSISGSFRILVKSSSTRNGFPVISDQNPSFVLFANKRRHISRTAIFHRSAISGSS 61

Query: 61  SNSGPSTTSS---PGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLK 120
                S  +S    GLYSAQ F+LT  NVDLVLEDVRP+LI+DGGNVDVVSVEDGVVSLK
Sbjct: 62  QGEKISPLASGVSSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLK 121

Query: 121 LVGACGSCPSSTTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPA 180
           L GAC SCPSS+TTM MGIERVLKEKFGD++K+I QV+DEE K+ T EAVN+HLDILRPA
Sbjct: 122 LQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPA 181

Query: 181 IRNYGGSVEVISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 221
           I+NYGGSVEV+S+ G DC+VKY GPESIG G++AAIKE+F DI+NV F+S
Sbjct: 182 IKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFTS 231

[Close]

BLAST of Cucsa.204860 vs. TAIR10
Match: AT5G49940.1 (AT5G49940.1 NIFU-like protein 2)

HSP 1 Score: 97.8 bits (242), Expect = 8.7e-21
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 1


Query: 74  LTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPSSTTTMKMGIERVL 133
           LT  NV+ VL+++RPYL++DGGNV +  ++  +V +KL GACGSCPSST TMKMGIER L
Sbjct: 85  LTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144

Query: 134 KEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRP-AIRNYGGSVEVISINGGDCLVKY 193
            EK  + V       +E   E   E +   L+ +RP  I    GS++++ I      ++ 
Sbjct: 145 MEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRI 204

Query: 194 EGPE----SIGTGVKAAIKERFPDITNV 217
            GP     ++   V   ++E+ P I  V
Sbjct: 205 TGPAAGVMTVRVAVTQKLREKIPSIAAV 232

[Close]

BLAST of Cucsa.204860 vs. TAIR10
Match: AT4G25910.1 (AT4G25910.1 NFU domain protein 3)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-18
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 1


Query: 74  LTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPSSTTTMKMGIERVL 133
           LT  NV+ VL++VRP L+ADGGNV +  ++  VV LKL GACGSCPSS+ T+KMGIE  L
Sbjct: 84  LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143

Query: 134 KEKFGDSVKEICQVYDEEP--KETTPEAVNSHLDILRPAIRNY-GGSVEVISINGGDCLV 193
           ++K  + +  + Q  + E    E   E +   L  LRP +    GG +E++ I+G    V
Sbjct: 144 RDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKV 203

Query: 194 KYEGPESIGTGVKAAIKER 210
           +  GP +    V+ A+ ++
Sbjct: 204 RLTGPAAGVMTVRVALTQK 221

[Close]

BLAST of Cucsa.204860 vs. TAIR10
Match: AT3G20970.1 (AT3G20970.1 NFU domain protein 4)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-08
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 75  TIGNVDLVLED-VRPYLIADGGNVDVVSV--EDGVVSLKLVGACGSCPSSTTTMKMGIER 134
           T+  +  +LE  +RP +  DGG+++      E G+V L++ GAC  CPSS+ T+K GIE 
Sbjct: 192 TVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIEN 251

Query: 135 VLKEKFGDSVKEICQVYDEEPKETT 157
           +L   +   VK + Q +D E +E T
Sbjct: 252 MLMH-YVSEVKGVEQEFDGEDEEGT 275

[Close]

BLAST of Cucsa.204860 vs. TAIR10
Match: AT1G51390.1 (AT1G51390.1 NFU domain protein 5)

HSP 1 Score: 54.7 bits (130), Expect = 8.5e-08
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 75  TIGNVDLVLED-VRPYLIADGGNVDVVS--VEDGVVSLKLVGACGSCPSSTTTMKMGIER 134
           T+  +  +LE  +RP +  DGG+++      E G+V L++ GAC  CPSS+ T+K GIE 
Sbjct: 187 TVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIEN 246

Query: 135 VLKEKFGDSVKEICQVYDEEPKETT 157
           +L   +   VK + Q +D E + T+
Sbjct: 247 MLMH-YVSEVKGVEQEFDGEEEGTS 270

[Close]

BLAST of Cucsa.204860 vs. NCBI nr
Match: gi|449436401|ref|XP_004135981.1| (PREDICTED: nifU-like protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 437.6 bits (1124), Expect = 1.3e-119
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST
Sbjct: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS
Sbjct: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 221
           ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS
Sbjct: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 220

[Close]

BLAST of Cucsa.204860 vs. NCBI nr
Match: gi|659101131|ref|XP_008451442.1| (PREDICTED: nifU-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 6.1e-117
Identity = 214/220 (97.27%), Postives = 218/220 (99.09%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLTTSGLLKTPLKNSQSPAN  QYPPFAYGQHQLPVSLKRAFPGRA+RASPSNSGPST
Sbjct: 1   MASLTTSGLLKTPLKNSQSPANYFQYPPFAYGQHQLPVSLKRAFPGRAVRASPSNSGPST 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           +SSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS
Sbjct: 61  SSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVN+HLDILRPAIRNYGGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNNHLDILRPAIRNYGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 221
           ISINGG+CLVKYEGPESIGTGVKAAIKERFPDITNVVFSS
Sbjct: 181 ISINGGNCLVKYEGPESIGTGVKAAIKERFPDITNVVFSS 220

[Close]

BLAST of Cucsa.204860 vs. NCBI nr
Match: gi|596109907|ref|XP_007221501.1| (hypothetical protein PRUPE_ppa011214mg [Prunus persica])

HSP 1 Score: 302.4 bits (773), Expect = 6.6e-79
Identity = 158/219 (72.15%), Postives = 179/219 (81.74%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLT +GL KTP   S+ PA S QYP   + Q     S    F   AIRAS + S  + 
Sbjct: 1   MASLTATGLPKTPTPFSKIPATSHQYPQSVFVQRHRLTSQGSIFVKSAIRAS-NPSAAAE 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           +SSPGLYSA+K+ELT+ NVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKL GACGSCPS
Sbjct: 61  SSSPGLYSAKKYELTVPNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLQGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGD++K+I QVYDEE KETT EAVN HLDILRPAI+N+GGSVEV
Sbjct: 121 STTTMKMGIERVLKEKFGDALKDIQQVYDEENKETTVEAVNGHLDILRPAIKNFGGSVEV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFS 220
           +S+ GGDC V Y GP+SIG+G+KAAIKE+FPDI NVVF+
Sbjct: 181 LSVEGGDCHVNYVGPDSIGSGIKAAIKEKFPDIVNVVFT 218

[Close]

BLAST of Cucsa.204860 vs. NCBI nr
Match: gi|1009148079|ref|XP_015891751.1| (PREDICTED: nifU-like protein 1, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 299.3 bits (765), Expect = 5.6e-78
Identity = 156/219 (71.23%), Postives = 174/219 (79.45%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSNSGPST 60
           MASLT +GL KTP  +      + QYP F   +       K  F   AI AS  +S P+ 
Sbjct: 1   MASLTATGLTKTPTPSQNIGGKTHQYPQFLSPKQLGLTCQKTIFLKTAINASNPSSAPTG 60

Query: 61  TSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGACGSCPS 120
           +SSPGLYSAQ FELT  NVDLVLEDVRPYLIADGGNVDVVSVE+GVVSLKL GACGSCPS
Sbjct: 61  SSSPGLYSAQTFELTARNVDLVLEDVRPYLIADGGNVDVVSVEEGVVSLKLQGACGSCPS 120

Query: 121 STTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYGGSVEV 180
           STTTMKMGIERVLKEKFGD+VK+I QV +EE KETT EAVN HLDILRPAI+NYGGSV+V
Sbjct: 121 STTTMKMGIERVLKEKFGDAVKDIRQVEEEEQKETTAEAVNGHLDILRPAIKNYGGSVQV 180

Query: 181 ISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFS 220
           +S+ GGDC VKY GPESIG+G+KAAIKERFPDI NVVF+
Sbjct: 181 LSVEGGDCFVKYLGPESIGSGIKAAIKERFPDIQNVVFT 219

[Close]

BLAST of Cucsa.204860 vs. NCBI nr
Match: gi|470104310|ref|XP_004288551.1| (PREDICTED: nifU-like protein 1, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 298.9 bits (764), Expect = 7.3e-78
Identity = 156/224 (69.64%), Postives = 184/224 (82.14%), Query Frame = 1


Query: 1   MASLTTSGLLKTPLKNSQSPANSLQYPPFAYGQHQLPVSLKRAFPGRAIRASPSN----- 60
           MASLTTS L KTP+ + Q PA S Q P F      + V   R F G ++RAS S+     
Sbjct: 1   MASLTTSWLPKTPIPSPQIPAKSHQSPQF------MLVKRTRIFLGSSVRASNSSAAAES 60

Query: 61  SGPSTTSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVVSLKLVGAC 120
           S  S++SSPGLYSA++F+LT+ NVD+VLEDVRPYLIADGGNVDVVSVEDGVVSLKL GAC
Sbjct: 61  SSSSSSSSPGLYSAKQFDLTVPNVDMVLEDVRPYLIADGGNVDVVSVEDGVVSLKLQGAC 120

Query: 121 GSCPSSTTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDILRPAIRNYG 180
           GSCPSSTTTMKMGIERVLKEKFGD++K+I QV+DEE +ETT EAVN HLDILRPAI+N+G
Sbjct: 121 GSCPSSTTTMKMGIERVLKEKFGDALKDIQQVFDEENRETTVEAVNGHLDILRPAIKNFG 180

Query: 181 GSVEVISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFS 220
           GSVEV+S+ GGDC VKY GP+SIG+G++AAIKE+FPDI NVVF+
Sbjct: 181 GSVEVLSVEGGDCHVKYVGPDSIGSGIRAAIKEKFPDIVNVVFT 218

The following BLAST results are available for this feature:

BLAST of Cucsa.204860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIFU1_ARATH	6.4e-66	61.74	NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1	[more]
NIFU1_ORYSJ	7.0e-20	39.11	NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1...	[more]
NIFU2_ARATH	1.6e-19	38.51	NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1	[more]
NIFU3_ARATH	4.2e-17	40.29	NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1	[more]
YUTI_BACSU	2.8e-13	52.86	Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) GN=yut...	[more]

BLAST of Cucsa.204860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB98_CUCSA	9.2e-120	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G412870 PE=4 SV=1	[more]
A0A140B480_PRUPE	4.6e-79	72.15	NFU domain protein 1 OS=Prunus persica var. persica GN=NFU1 PE=2 SV=1	[more]
M5XUC8_PRUPE	4.6e-79	72.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011214mg PE=4 SV=1	[more]
W9R6P7_9ROSA	6.7e-78	69.41	NifU-like protein 1 OS=Morus notabilis GN=L484_018769 PE=4 SV=1	[more]
B9RNA2_RICCO	2.5e-72	69.59	Nitrogen fixation protein nifU, putative OS=Ricinus communis GN=RCOM_1345940 PE=...	[more]

BLAST of Cucsa.204860 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01940.1	3.6e-67	61.74	NFU domain protein 1	[more]
AT5G49940.1	8.7e-21	38.51	NIFU-like protein 2	[more]
AT4G25910.1	2.4e-18	40.29	NFU domain protein 3	[more]
AT3G20970.1	2.9e-08	37.65	NFU domain protein 4	[more]
AT1G51390.1	8.5e-08	36.47	NFU domain protein 5	[more]

BLAST of Cucsa.204860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436401\|ref\|XP_004135981.1\|	1.3e-119	100.00	PREDICTED: nifU-like protein 1, chloroplastic [Cucumis sativus]	[more]
gi\|659101131\|ref\|XP_008451442.1\|	6.1e-117	97.27	PREDICTED: nifU-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|596109907\|ref\|XP_007221501.1\|	6.6e-79	72.15	hypothetical protein PRUPE_ppa011214mg [Prunus persica]	[more]
gi\|1009148079\|ref\|XP_015891751.1\|	5.6e-78	71.23	PREDICTED: nifU-like protein 1, chloroplastic [Ziziphus jujuba]	[more]
gi\|470104310\|ref\|XP_004288551.1\|	7.3e-78	69.64	PREDICTED: nifU-like protein 1, chloroplastic [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001075	NIF_FeS_clus_asmbl_NifU_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0051536	iron-sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0005198	structural molecule activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.204860.1	Cucsa.204860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PRODOM	PD002830		coord: 83..135 score: 9.0
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PFAM	PF01106	NifU	coord: 161..216 score: 8.0E-5coord: 80..139 score: 8.0
None	No IPR available	PANTHER	PTHR11178	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	coord: 65..211 score: 5.6
None	No IPR available	unknown	SSF117916	Fe-S cluster assembly (FSCA) domain-like	coord: 155..217 score: 7.85E-8coord: 77..149 score: 3.49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.204860	Cla015160	Watermelon (97103) v1	cgywmB402
Cucsa.204860	Csa7G412870	Cucumber (Chinese Long) v2	cgycuB312
Cucsa.204860	MELO3C015905	Melon (DHL92) v3.5.1	cgymeB371
Cucsa.204860	ClCG09G004900	Watermelon (Charleston Gray)	cgywcgB379
Cucsa.204860	CSPI07G18350	Wild cucumber (PI 183967)	cgycpiB325
Cucsa.204860	CmaCh17G010180	Cucurbita maxima (Rimu)	cgycmaB0606
Cucsa.204860	CmoCh17G009960	Cucurbita moschata (Rifu)	cgycmoB0608
Cucsa.204860	Lsi02G024950	Bottle gourd (USVL1VR-Ls)	cgylsiB351
Cucsa.204860	Cp4.1LG12g06260	Cucurbita pepo (Zucchini)	cgycpeB0579
Cucsa.204860	MELO3C015905.2	Melon (DHL92) v3.6.1	cgymedB368
Cucsa.204860	CsaV3_7G030190	Cucumber (Chinese Long) v3	cgycucB330
Cucsa.204860	Cla97C09G167320	Watermelon (97103) v2	cgywmbB383
Cucsa.204860	Bhi09G000653	Wax gourd	cgywgoB431
Cucsa.204860	Carg07106	Silver-seed gourd	carcgyB0132

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.204860	Silver-seed gourd	carcgyB0522
Cucsa.204860	Silver-seed gourd	carcgyB0932
Cucsa.204860	Watermelon (97103) v2	cgywmbB382
Cucsa.204860	Wax gourd	cgywgoB429
Cucsa.204860	Cucurbita maxima (Rimu)	cgycmaB0605
Cucsa.204860	Cucurbita maxima (Rimu)	cgycmaB0608
Cucsa.204860	Cucurbita moschata (Rifu)	cgycmoB0607
Cucsa.204860	Cucurbita moschata (Rifu)	cgycmoB0610
Cucsa.204860	Cucurbita pepo (Zucchini)	cgycpeB0580
Cucsa.204860	Bottle gourd (USVL1VR-Ls)	cgylsiB352