Cucsa.200160 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGCCTGATTTTGCATTCCCTCCTGTTATCGTACATCTCTCTCTTCTCTTTCCCTTCCTCTTCAGAAACTTCTCCAAATTCCAATTTACTTATCAAAACCTCATCCTCTAAATCGTATTTACCAATCAAATTCGAGCCCCTCTACCACCGATTCACCATCTCTAAGAAAGAAAAAACTTCGGATTGCTCATGTCGGTGGCGCCAAAGAGAAACCATAGGTTTTTTTTtCTTGTTCTTTAGAAAAATCTCATTAAGTTACTTAATAATGGTGTTTATGACGTTTTTCTTCTAATTGAAAAATAAAATTGTGTCGTATCTGTTGTTAATCAAGAAGAAAAGTGGATGAAATGGAGACAAAGAAGATTTAAAGAATGCATAGTAGCTTCTCTAGTTTAATTCAATTGAAAAAAACAAAAAAGTTCAATTCAATTGAAAATTGCATTTTTAATTTCTAGTTGCGTGTCAAAACTAGCTTACTCTGTCATATGCCACTTGAAAATACATAATTCCGCCCACTGATTATTCTTAAGTCAAAAGCAGTGACCTTCCCTGATTTTAAACAAGCTTCCTTCACCGCAGCTGATAACTCAACAATTGGTGTGCTCACAATCAACACCTCAATTTTTGGTACATAGAACAAAAATCATATCATTCTTTCAAACATAGAGTAGTACGTTGTTTTGTTCCTCCCATAAACCATAAGTGCAAAGTTTCCAACTTTTCCATCTTCTGATTCTTACTTTCTTAGCAGGAACTATGTGTATTGCAGCATTTGTTTGGCAGTCTCATTCACTATACTCTCTCATTCTCTTCCAGAACAGAGATGAATATCACAACAGGCAAATAAATTTATATTTCTCTATACCCTTCCTCCCTCCCCcCcTTAAATGCAATAGAGATTATGCATGATGACCATATGAGATTATACTTACAGGCCTACGAAACCAATGTCATGGTGGGAGGACAATGAGATAGCAGGAGGGAGAGACGAGGTTGGGGGCGGAACTTGGTTAGGTTGTTCAAGGAAAGGCAAGGTTGCATTTGTTACTAATGTGTTGGAACCTCATGAAATCCCTGACGCTAAAAGCCGTGGACACCTTCCTCTTCTCTTTCTGCAGGTTATATAGCATCATCATGTCTTTGTATGATATATCATTGGAAGGGCTTTCAATGCATGATGAGGAATTAGAGATGTTTTAACTATTGAGCTAATTTTATTTTCACACTTCATCCTTAATTTCTTAATTTTTATCATGCTTTCTTTTTCGTATTATTTTCTGCACATACTATCTACTAACTTTTCTAAGAAGGAATTTGCTCTTACGAACTTATCAATTTTCTCTACATACCTTTGCTTCCTAATCTCTCATCAACACACACCCACCTCTCATTATACGCATATAGTTCATCTCATTCTTCTATTTCAAACTTATCTCACTCAATGTTTTTCTTGTAATTTAAAATTTTCAAATACAAAAACAAAaCAACTGCAAAATGTTGAAATACTTTTtGTTAAAAAAaCACTTTTTATAGAACTTCTACAAAAGCGTTTGCAAACAGCTTGCTGTTGAAGTCATGTTCAACTCTGGAATCTATGATCTATCTAAAGATCTTCTAATTGAATCCATTTACAGTTATTATCCATTTTTAACAAGAGAATAGTGAAATAACAGAGCACAAAGAGTCCAAAGGAATTTGCAGAGGAGATAAAGGCAGAAGCGTATCAATATAATGGATTTAACCTAATAGTAGCTGACATAAGTACTAAAACCATGATTTATATCTCCAACAGAACAAAAGGGGATCATATTCTCATTCAGGAGGTACCTCCTGGTTTACATGTGTTATCTAATGCAGAACTTGATACCGCTTGGCATAAGGTTTGTAACTCCTAATCTTAACATTATTCAAGGCATGCATATGTGTGTGTGCGCGCGTGTGTGCATGTGCATATATACATATATACGCATATGCATATATATATATATAGACGCACATATGAAAAGGCAAACTAACCTGGAAGAAACAAAAaGTGAAGAAAAaTCGAATAGTGAGAGACTGAAGGCTTTGACTTACATGCAGGTGCAGCGCTTGAGGCTAAAATTTAATGAACAGCTTTGTATATATGCTGAAGGTGAAATACCTGAGAAAGAGATGGTTGAGAGATTAATGAGGGATCATGTTAAAGCTGATGAAAGCAAACTTCCTCGTATATCCTCCCCTGACTGGGAGTACAATACAAGCTCTGTCTTTGTCCAATTTCAGACACCTCTGGTAAGCAGACAATTTGTTTTCATTCACAGCTGAAATTTTGACTTAGTTTTTAATCATTTTCAACACACAGGGATGTTTTGGTACCAGAAGCACATCTGTATTGACTATAACTAAAACAGGAATGGTACACTTTTATGAGACTTACCTAGAAACAGGTACTTGGAAGGAAAAAGCATTGAGTTACTTCATTGAATAGTGGAACTAACAATATATAATCATAAGAATTGTTGGTCAGTATATGTCAAAATTTTCGTTGAGTTTCTACAATGTCGACATTCTTTCACCTTCTACTTTATCTGCTTACGGAGTTATTTATGTGGATGCTTTCCCTTTATTTAATTGCCCAGAACAAATAAAAGTGTGGCGGCCCATTT GGGCCTGATTTTGCATTCCCTCCTGTTATCGTACATCTCTCTCTTCTCTTTCCCTTCCTCTTCAGAAACTTCTCCAAATTCCAATTTACTTATCAAAACCTCATCCTCTAAATCGTATTTACCAATCAAATTCGAGCCCCTCTACCACCGATTCACCATCTCTAAGAAAGAAAAAACTTCGGATTGCTCATGTCGGTGGCGCCAAAGAGAAACCATAGGAACTATGTGTATTGCAGCATTTGTTTGGCAGTCTCATTCACTATACTCTCTCATTCTCTTCCAGAACAGAGATGAATATCACAACAGGCCTACGAAACCAATGTCATGGTGGGAGGACAATGAGATAGCAGGAGGGAGAGACGAGGTTGGGGGCGGAACTTGGTTAGGTTGTTCAAGGAAAGGCAAGGTTGCATTTGTTACTAATGTGTTGGAACCTCATGAAATCCCTGACGCTAAAAGCCGTGGACACCTTCCTCTTCTCTTTCTGCAGAGCACAAAGAGTCCAAAGGAATTTGCAGAGGAGATAAAGGCAGAAGCGTATCAATATAATGGATTTAACCTAATAGTAGCTGACATAAGTACTAAAACCATGATTTATATCTCCAACAGAACAAAAGGGGATCATATTCTCATTCAGGAGGTACCTCCTGGTTTACATGTGTTATCTAATGCAGAACTTGATACCGCTTGGCATAAGGTGCAGCGCTTGAGGCTAAAATTTAATGAACAGCTTTGTATATATGCTGAAGGTGAAATACCTGAGAAAGAGATGGTTGAGAGATTAATGAGGGATCATGTTAAAGCTGATGAAAGCAAACTTCCTCGTATATCCTCCCCTGACTGGGAGTACAATACAAGCTCTGTCTTTGTCCAATTTCAGACACCTCTGGGATGTTTTGGTACCAGAAGCACATCTGTATTGACTATAACTAAAACAGGAATGGTACACTTTTATGAGACTTACCTAGAAACAGGTACTTGGAAGGAAAAAGCATTGAGTTACTTCATTGAATAGTGGAACTAACAATATATAATCATAAGAATTGTTGGTCAGTATATGTCAAAATTTTCGTTGAGTTTCTACAATGTCGACATTCTTTCACCTTCTACTTTATCTGCTTACGGAGTTATTTATGTGGATGCTTTCCCTTTATTTAATTGCCCAGAACAAATAAAAGTGTGGCGGCCCATTT ATGTGTATTGCAGCATTTGTTTGGCAGTCTCATTCACTATACTCTCTCATTCTCTTCCAGAACAGAGATGAATATCACAACAGGCCTACGAAACCAATGTCATGGTGGGAGGACAATGAGATAGCAGGAGGGAGAGACGAGGTTGGGGGCGGAACTTGGTTAGGTTGTTCAAGGAAAGGCAAGGTTGCATTTGTTACTAATGTGTTGGAACCTCATGAAATCCCTGACGCTAAAAGCCGTGGACACCTTCCTCTTCTCTTTCTGCAGAGCACAAAGAGTCCAAAGGAATTTGCAGAGGAGATAAAGGCAGAAGCGTATCAATATAATGGATTTAACCTAATAGTAGCTGACATAAGTACTAAAACCATGATTTATATCTCCAACAGAACAAAAGGGGATCATATTCTCATTCAGGAGGTACCTCCTGGTTTACATGTGTTATCTAATGCAGAACTTGATACCGCTTGGCATAAGGTGCAGCGCTTGAGGCTAAAATTTAATGAACAGCTTTGTATATATGCTGAAGGTGAAATACCTGAGAAAGAGATGGTTGAGAGATTAATGAGGGATCATGTTAAAGCTGATGAAAGCAAACTTCCTCGTATATCCTCCCCTGACTGGGAGTACAATACAAGCTCTGTCTTTGTCCAATTTCAGACACCTCTGGGATGTTTTGGTACCAGAAGCACATCTGTATTGACTATAACTAAAACAGGAATGGTACACTTTTATGAGACTTACCTAGAAACAGGTACTTGGAAGGAAAAAGCATTGAGTTACTTCATTGAATAG MCIAAFVWQSHSLYSLILFQNRDEYHNRPTKPMSWWEDNEIAGGRDEVGGGTWLGCSRKGKVAFVTNVLEPHEIPDAKSRGHLPLLFLQSTKSPKEFAEEIKAEAYQYNGFNLIVADISTKTMIYISNRTKGDHILIQEVPPGLHVLSNAELDTAWHKVQRLRLKFNEQLCIYAEGEIPEKEMVERLMRDHVKADESKLPRISSPDWEYNTSSVFVQFQTPLGCFGTRSTSVLTITKTGMVHFYETYLETGTWKEKALSYFIE*
BLAST of Cucsa.200160 vs. Swiss-Prot
Match: TNG2_MOUSE (Transport and Golgi organization 2 homolog OS=Mus musculus GN=Tango2 PE=1 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.1e-31 Identity = 94/283 (33.22%), Postives = 147/283 (51.94%), Query Frame = 1
BLAST of Cucsa.200160 vs. Swiss-Prot
Match: TNG2_BOVIN (Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 3.7e-28 Identity = 93/263 (35.36%), Postives = 141/263 (53.61%), Query Frame = 1
BLAST of Cucsa.200160 vs. Swiss-Prot
Match: TNG2_HUMAN (Transport and Golgi organization protein 2 homolog OS=Homo sapiens GN=TANGO2 PE=2 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.8e-27 Identity = 93/283 (32.86%), Postives = 145/283 (51.24%), Query Frame = 1
BLAST of Cucsa.200160 vs. Swiss-Prot
Match: YG37_YEAST (Uncharacterized protein YGR127W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR127W PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07 Identity = 59/224 (26.34%), Postives = 92/224 (41.07%), Query Frame = 1
BLAST of Cucsa.200160 vs. TrEMBL
Match: A0A0A0LSJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144330 PE=4 SV=1) HSP 1 Score: 545.8 bits (1405), Expect = 2.9e-152 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
BLAST of Cucsa.200160 vs. TrEMBL
Match: V4SLH2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002169mg PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 1.3e-101 Identity = 174/263 (66.16%), Postives = 214/263 (81.37%), Query Frame = 1
BLAST of Cucsa.200160 vs. TrEMBL
Match: A0A067HBK2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024552mg PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 1.3e-101 Identity = 174/263 (66.16%), Postives = 214/263 (81.37%), Query Frame = 1
BLAST of Cucsa.200160 vs. TrEMBL
Match: A0A059BWI9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03570 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 2.0e-97 Identity = 170/263 (64.64%), Postives = 209/263 (79.47%), Query Frame = 1
BLAST of Cucsa.200160 vs. TrEMBL
Match: A0A0R0JL78_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G105100 PE=4 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 5.0e-96 Identity = 162/262 (61.83%), Postives = 204/262 (77.86%), Query Frame = 1
BLAST of Cucsa.200160 vs. TAIR10
Match: AT4G38260.1 (AT4G38260.1 Protein of unknown function (DUF833)) HSP 1 Score: 280.4 bits (716), Expect = 1.1e-75 Identity = 141/269 (52.42%), Postives = 178/269 (66.17%), Query Frame = 1
BLAST of Cucsa.200160 vs. TAIR10
Match: AT1G20730.1 (AT1G20730.1 Protein of unknown function (DUF833)) HSP 1 Score: 99.8 bits (247), Expect = 2.7e-21 Identity = 82/258 (31.78%), Postives = 131/258 (50.78%), Query Frame = 1
BLAST of Cucsa.200160 vs. TAIR10
Match: AT1G20740.1 (AT1G20740.1 Protein of unknown function (DUF833)) HSP 1 Score: 94.0 bits (232), Expect = 1.5e-19 Identity = 74/221 (33.48%), Postives = 113/221 (51.13%), Query Frame = 1
BLAST of Cucsa.200160 vs. TAIR10
Match: AT1G20680.1 (AT1G20680.1 Protein of unknown function (DUF833)) HSP 1 Score: 79.3 bits (194), Expect = 3.8e-15 Identity = 65/241 (26.97%), Postives = 114/241 (47.30%), Query Frame = 1
BLAST of Cucsa.200160 vs. NCBI nr
Match: gi|778659310|ref|XP_011654174.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis sativus]) HSP 1 Score: 545.8 bits (1405), Expect = 4.1e-152 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
BLAST of Cucsa.200160 vs. NCBI nr
Match: gi|700209784|gb|KGN64880.1| (hypothetical protein Csa_1G144330 [Cucumis sativus]) HSP 1 Score: 545.8 bits (1405), Expect = 4.1e-152 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
BLAST of Cucsa.200160 vs. NCBI nr
Match: gi|778659324|ref|XP_011654190.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis sativus]) HSP 1 Score: 541.2 bits (1393), Expect = 1.0e-150 Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 1
BLAST of Cucsa.200160 vs. NCBI nr
Match: gi|659071849|ref|XP_008462211.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis melo]) HSP 1 Score: 523.9 bits (1348), Expect = 1.7e-145 Identity = 251/263 (95.44%), Postives = 258/263 (98.10%), Query Frame = 1
BLAST of Cucsa.200160 vs. NCBI nr
Match: gi|659071853|ref|XP_008462227.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis melo]) HSP 1 Score: 498.0 bits (1281), Expect = 9.8e-138 Identity = 238/252 (94.44%), Postives = 247/252 (98.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|