Cucsa.199730 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.199730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRibosomal protein
Locationscaffold01365 : 5915 .. 8823 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTATTTGCATTACCATTTTCCATTGTCATTTGCTTTTCTTTGAAGTTTCTTACAGTTTCTCAACTCTGTTTGTATACAGGACTGAAGGGTATACTGTCTTTGCGAAGGCGAAGATTCGAAAATGAGGTATTTTTGTCAGCATTCTCTTTGTTGTTCATAATTGTTTTGGTTTCTGATTCATGTAAGCATTTAGGTTTAACTAGTTACGATTTTTGCACTCTCTTAGTTTCTTTTATTCGATTGTACTGTTTTTTGAGTTTTATGGTTGCTATAATAATGGGTTCTGTATAATTTAATCTAATGTTTGAGTAATGTGAACTTTTGAAAGTGGATGGATGATCTTTTGGAAGTAGGTAGGCCTCTTTTCTTTGATTCTATTGTTTTGAGTTTTATGGTTGTTAGAATAGTGGGTTTGTTCTGAATAATCTAATCTACTATTCGAGTAATGTGAACTTTTAAGACAGTGGATTGATGATTTTGGGAAGTAGGCTTCTTTTCTTCAAATCTACTGTTTTGAGTCTTATGGTTGCTAAGATAATAGGTTCTGTATATTTTAATCTAATGTTCGAGTAATTTGAACCTTTGAGAAAGTGGATTGATAATCTTTTGGAAGTAGGCTTCTTTTATTTGATTCCACTGTTTTGAGTTTTATGGTTGCTAGAACAATGGGTTCTAAATGATTTTATCTAATGTTGGAGTAATGTGAACTTTTGATAGAGTGTATCGATAATCTTTAGGAAGTAGGCTTGTATTCCTTTGATTCTTCATGAAGTTTCAGCATGTGATCGTTTCAGTTATACCCCGTGTTTTAAAAAGCTGTCTGAGGCACAAGGCTTAGGTTTGGTGAAAATCATTGTGCCTTTTGGCTCGAAGACCTGTGTCTTGGAGATTTTTCTTTATTTTTAAGAAATGGTAATTATTAGAAGTCTTTTCTTTTTCATTTTCATTTTTTTTCATATTTCCACTTCAACTATGCTTCCTCTCCTTAATAAAGTACTTTTATCTAAAGTGCACCTCATGAAAACTCTTTTTGCGCTTTGTGCTTAGCCTAAGATTATTGTGCTTTATTGGGGCCATACCTTGTGTGTAATATTATCTTTTGATTTCCCTAAACAGTAAGCTTCAGAGTGATGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGAGAAAAAGAGGAAGTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCACACATTCCCCGTCCCAAGATGAAGATATGCATGCTTGGGGATGCCTCACACATTGAAGAGGTAATATTATATAGCTCTAGGTACATGATCATGTTACTGCTGACCCTTAGTTATTTTGCTTCCTATATCTTCACTTTGCTTATTGTAAGCTATAGAAATTTATTTTATTATGCTCAATATTTCTAAACTACATTTGTTTACTTATAGCCAAATCTATTGTTGGATTCTAACTATAATTTAAGAAGCACTGAGACTTTAGTTTGGCTAGTGTGTACGTGTTCAACACGTGCCGGACACTGACATGGAGACCTATCGAACACATGTTAGTGTAACAAATGCATTAGACATGCATAGAACACTCAGTTGAGTGGACTAGAAAGACACATATAAGACAATAATAATAACTTTTGAGTGAGGGATACATGAAGCTTAAGTTTTTTAAGCATATAAATGCTTCAATTCATTTATTATGAATTTTATTTTACTATAAAAATGATGAAAAATGAATATTTAAAAAATGTATCCTTGCCTTGTCATGTCCTATAATTTTAGAACATGGCATGTCGCTGTTTCTGTGTCATGTCGTATTTGTGTTCCTGCTTCTTAGAATATAACCTCTCTGTTTTTAAATTCCTACAGTTTATGGATTTGTTGTGGTGTTTATAAGCTAAATATTAATGTTTCTGATGATTGTTTTGGAGATGGATGATTGGATATGCCTTTTTTTTATTTGTTACTTGCGCTTTTGGGAGCTCGATGTGCTAATGGGGTTTCATGAAAGTATATTTCAGGCTGAGAAGATTGGTCTAGAATATATGGATGTGGAAGGCTTGAAGAAGCTTAATAAGAACAAGAAATTGGTGAAGAAACTTGCCAAAAAATACCATGCCTTTTTGGCATCAGAATCTATAATCAAGCAGATTCCTCGTCTTCTAGGCCCTGGTCTCAACAAAGCAGGTTAGAATATTTGATGGAGATGTTCTGTTTTTCTTCACCAAATATGATCAACTGATTGACTCCCTGGCAAATTGATCCTTGCTATGTTCAACTTTCAATCCTATCTTTGGTGTTTTTATTTCAGGAAAGTTCCCAACATTGGTGACACATCAAGAGACGCTTGAATCTAAAGTTAATGAGACCAAGGCGATGGTCAAGTTTCAACTGAAGAAGGTTCTTTGTATGGGAGTTGCTGTTGGAAACGTTTCCATGGATGAGAAGCAAGTCTTCCAAAATGTCCAAATGAGCGTCAATTTCCTAGTTTCTTTGTTGAAAAAGAACTGGCAGAATGTAAGTTTGTCTATGTGTAAATCTCCTAACTCAACTCCATCTGTTTCATCATTTTGCTTATGGAGATGTGAATATGGTTTCTTGCAGGTTAGGTGCCTGTACCTGAAGAGCACAATGGGGAAGTCGTATCGAGTTTTCTAAGCTTTGTTAGCAATGTAGTCAGTCTTGTGTGTTCAATCTTTTTATTATCAACGTTATTTCTCGAAGAGCAGTTTTGTGAAATGAGCGTTTTTGAATGATTCTTGAACAAAGAAACAGGAATGTTTTCTTCTCTTTTAAAGTGACAATTGATAATGAAGTTTTTAATTCCCACCCAACGTAACCTATTATGAACCTTTGTTTGCA

mRNA sequence

TCTATTTGCATTACCATTTTCCATTGTCATTTGCTTTTCTTTGAAGTTTCTTACAGTTTCTCAACTCTGTTTGTATACAGGACTGAAGGGTATACTGTCTTTGCGAAGGCGAAGATTCGAAAATGAGTAAGCTTCAGAGTGATGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGAGAAAAAGAGGAAGTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCACACATTCCCCGTCCCAAGATGAAGATATGCATGCTTGGGGATGCCTCACACATTGAAGAGGCTGAGAAGATTGGTCTAGAATATATGGATGTGGAAGGCTTGAAGAAGCTTAATAAGAACAAGAAATTGGTGAAGAAACTTGCCAAAAAATACCATGCCTTTTTGGCATCAGAATCTATAATCAAGCAGATTCCTCGTCTTCTAGGCCCTGGTCTCAACAAAGCAGGAAAGTTCCCAACATTGGTGACACATCAAGAGACGCTTGAATCTAAAGTTAATGAGACCAAGGCGATGGTCAAGTTTCAACTGAAGAAGGTTCTTTGTATGGGAGTTGCTGTTGGAAACGTTTCCATGGATGAGAAGCAAGTCTTCCAAAATGTCCAAATGAGCGTCAATTTCCTAGTTTCTTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCCTGTACCTGAAGAGCACAATGGGGAAGTCGTATCGAGTTTTCTAAGCTTTGTTAGCAATGTAGTCAGTCTTGTGTGTTCAATCTTTTTATTATCAACGTTATTTCTCGAAGAGCAGTTTTGTGAAATGAGCGTTTTTGAATGATTCTTGAACAAAGAAACAGGAATGTTTTCTTCTCTTTTAAAGTGACAATTGATAATGAAGTTTTTAATTCCCACCCAACGTAACCTATTATGAACCTTTGTTTGCA

Coding sequence (CDS)

ATGAGTAAGCTTCAGAGTGATGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGAGAAAAAGAGGAAGTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCACACATTCCCCGTCCCAAGATGAAGATATGCATGCTTGGGGATGCCTCACACATTGAAGAGGCTGAGAAGATTGGTCTAGAATATATGGATGTGGAAGGCTTGAAGAAGCTTAATAAGAACAAGAAATTGGTGAAGAAACTTGCCAAAAAATACCATGCCTTTTTGGCATCAGAATCTATAATCAAGCAGATTCCTCGTCTTCTAGGCCCTGGTCTCAACAAAGCAGGAAAGTTCCCAACATTGGTGACACATCAAGAGACGCTTGAATCTAAAGTTAATGAGACCAAGGCGATGGTCAAGTTTCAACTGAAGAAGGTTCTTTGTATGGGAGTTGCTGTTGGAAACGTTTCCATGGATGAGAAGCAAGTCTTCCAAAATGTCCAAATGAGCGTCAATTTCCTAGTTTCTTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCCTGTACCTGAAGAGCACAATGGGGAAGTCGTATCGAGTTTTCTAA

Protein sequence

MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF*
Homology
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BLAST of Cucsa.199730 vs. Swiss-Prot
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.4e-105
Identity = 188/216 (87.04%), Postives = 204/216 (94.44%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+ L+EAIS +  +S EK RKFTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMK+CMLGDA H+EEAEKIGL+YMDVE LKK+NKNKKLVKKLAKKYHAFLASE+IIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           N+QMSVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct: 181 NIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216

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BLAST of Cucsa.199730 vs. Swiss-Prot
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.4e-105
Identity = 188/216 (87.04%), Postives = 204/216 (94.44%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+ L+EAIS +  +S EK RKFTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMK+CMLGDA H+EEAEKIGL+YMDVE LKK+NKNKKLVKKLAKKYHAFLASE+IIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           N+QMSVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct: 181 NIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216

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BLAST of Cucsa.199730 vs. Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.6e-104
Identity = 192/217 (88.48%), Postives = 203/217 (93.55%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKK-RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REAISSI T   E K R FTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQI 120
           PKMKICMLGDA H+EEAEKIGLE MDVE LKKLNKNKKLVKKLAKK+HAFLASES+IKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVF 180
           PRLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

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BLAST of Cucsa.199730 vs. Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.4e-104
Identity = 189/216 (87.50%), Postives = 202/216 (93.52%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S  KKR F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEK+GLE MDVE LKKLNKNKKLVKKLAKKYHAFLASES+IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]
BLAST of Cucsa.199730 vs. Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 6.5e-103
Identity = 186/216 (86.11%), Postives = 201/216 (93.06%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S EKKR F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASES+IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LE+KVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]
BLAST of Cucsa.199730 vs. TrEMBL
Match: A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.1e-116
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]
BLAST of Cucsa.199730 vs. TrEMBL
Match: A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.4e-112
Identity = 206/216 (95.37%), Postives = 214/216 (99.07%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDASH+EEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+IIKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGN++M+EKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]
BLAST of Cucsa.199730 vs. TrEMBL
Match: C6SVL1_SOYBN (Ribosomal protein OS=Glycine max GN=GLYMA_12G184900 PE=2 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 6.5e-110
Identity = 201/216 (93.06%), Postives = 209/216 (96.76%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS I TDS EK RKF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEKIGL+YMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]
BLAST of Cucsa.199730 vs. TrEMBL
Match: A0A0B2R114_GLYSO (Ribosomal protein OS=Glycine soja GN=glysoja_026213 PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 6.5e-110
Identity = 201/216 (93.06%), Postives = 209/216 (96.76%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS I TDS EK RKF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEKIGL+YMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]
BLAST of Cucsa.199730 vs. TrEMBL
Match: C6T552_SOYBN (Ribosomal protein (Fragment) OS=Glycine max GN=GLYMA_13G316400 PE=2 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 2.5e-109
Identity = 200/216 (92.59%), Postives = 208/216 (96.30%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS I  DS EK RKF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEKIGL+YMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]
BLAST of Cucsa.199730 vs. TAIR10
Match: AT5G22440.1 (AT5G22440.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 379.4 bits (973), Expect = 1.5e-105
Identity = 192/217 (88.48%), Postives = 203/217 (93.55%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKK-RKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REAISSI T   E K R FTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQI 120
           PKMKICMLGDA H+EEAEKIGLE MDVE LKKLNKNKKLVKKLAKK+HAFLASES+IKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVF 180
           PRLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

[Close]
BLAST of Cucsa.199730 vs. TAIR10
Match: AT1G08360.1 (AT1G08360.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 379.0 bits (972), Expect = 1.9e-105
Identity = 189/216 (87.50%), Postives = 202/216 (93.52%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S  KKR F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEK+GLE MDVE LKKLNKNKKLVKKLAKKYHAFLASES+IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LESKVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]
BLAST of Cucsa.199730 vs. TAIR10
Match: AT2G27530.1 (AT2G27530.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 374.8 bits (961), Expect = 3.6e-104
Identity = 186/216 (86.11%), Postives = 201/216 (93.06%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   S EKKR F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASES+IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLV+HQE+LE+KVNETKA VKFQLKKVLCMGVAVGN+SM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]
BLAST of Cucsa.199730 vs. TAIR10
Match: AT2G42650.1 (AT2G42650.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-10
Identity = 52/230 (22.61%), Postives = 107/230 (46.52%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKR-KFTETIE------LQIGLKNYDPQKDKRFSGSVK 60
           MS++    + +A+ ++  + NEK R +  + +E      L + LK   PQ++   +  + 
Sbjct: 1   MSRVSPKTVDDAVKALVKEGNEKSRTEKPQLLEEDGFFYLVVALKKI-PQRNFTNAYRIP 60

Query: 61  LPH----IPRPKMKICMLGD-----ASHIEEAEK-IGLEYMDVEGLKKLNKNK------K 120
           LPH          ++C++ D         E+A+K I  E + +  + KL+K K      +
Sbjct: 61  LPHPLINTTEDSPELCLIIDDRPESGLTEEDAKKNIKSENIPITKVVKLSKLKSDYGSFE 120

Query: 121 LVKKLAKKYHAFLASESIIKQIPRLLGPGLNKAGKFPTLVTHQE-TLESKVNETKAMVKF 180
             +KL   Y  F +   +I  +P+L+G    ++ K P  +  +    + ++ +      F
Sbjct: 121 SKRKLCDSYDMFFSDRRVIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMF 180

Query: 181 QLKKVLCMGVAVGNVSMDEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLK 207
            ++   C  + V  +SM+   + +NV  ++N +V +L   W+ +R L+LK
Sbjct: 181 FMRTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229

[Close]
BLAST of Cucsa.199730 vs. TAIR10
Match: AT3G58660.1 (AT3G58660.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 53/195 (27.18%), Postives = 88/195 (45.13%), Query Frame = 1 

Query: 29  ETIELQIGLKNYDPQKDKRFSGSVKLPH-IPRPKM---KICMLGD------ASHIEEAEK 88
           E + L + LK   PQK +  +  + LPH +  P +   +IC++ D       +  +  +K
Sbjct: 56  ELVYLFVTLKKI-PQKTRTNAYRIPLPHPLINPTVDSPEICLIIDDRPKSGLTKDDAMKK 115

Query: 89  IGLEYMDVEGLKKLNKNKKLVK------KLAKKYHAFLASESIIKQIPRLLGPGLNKAGK 148
           I  E + +  + KL+K K   K      KL   Y  F     II  +PR++G     + K
Sbjct: 116 IKSENIPITKVIKLSKLKSDYKAFEAKRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKK 175

Query: 149 FPT-LVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQNVQMSVNFLVS 207
            P  L       + ++ +      F ++   C  + VG +SMD  ++ +NV  ++N LV 
Sbjct: 176 IPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICEITENVMATLNGLVE 235

[Close]
BLAST of Cucsa.199730 vs. NCBI nr
Match: gi|449443440|ref|XP_004139485.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 3.0e-116
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]
BLAST of Cucsa.199730 vs. NCBI nr
Match: gi|659071695|ref|XP_008461453.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo])

HSP 1 Score: 424.1 bits (1089), Expect = 1.5e-115
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQETLESKVNETKA VKFQLKKVLCMGVAVGNVSMDEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKATVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]
BLAST of Cucsa.199730 vs. NCBI nr
Match: gi|659117410|ref|XP_008458587.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo])

HSP 1 Score: 413.7 bits (1062), Expect = 2.0e-112
Identity = 206/216 (95.37%), Postives = 214/216 (99.07%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDASH+EEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+IIKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGN++M+EKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]
BLAST of Cucsa.199730 vs. NCBI nr
Match: gi|351721216|ref|NP_001236946.1| (uncharacterized protein LOC100305550 [Glycine max])

HSP 1 Score: 404.8 bits (1039), Expect = 9.3e-110
Identity = 201/216 (93.06%), Postives = 209/216 (96.76%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS I TDS EK RKF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEKIGL+YMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]
BLAST of Cucsa.199730 vs. NCBI nr
Match: gi|356550103|ref|XP_003543429.1| (PREDICTED: 60S ribosomal protein L10a [Glycine max])

HSP 1 Score: 402.9 bits (1034), Expect = 3.5e-109
Identity = 200/216 (92.59%), Postives = 208/216 (96.30%), Query Frame = 1 

Query: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS I  DS EK RKF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120
           KMKICMLGDA H+EEAEKIGL+YMDVE LKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180
           RLLGPGLNKAGKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNVSM+EKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180

Query: 181 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 217
           NVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

The following BLAST results are available for this feature:
BLAST of Cucsa.199730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R10A_ORYSJ1.4e-10587.0460S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1[more]
R10A_ORYSI1.4e-10587.0460S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1[more]
R10A3_ARATH2.6e-10488.4860S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1[more]
R10A1_ARATH3.4e-10487.5060S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1[more]
R10A2_ARATH6.5e-10386.1160S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1[more]
BLAST of Cucsa.199730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVE6_CUCSA2.1e-116100.00Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1[more]
A0A0A0KEW8_CUCSA1.4e-11295.37Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1[more]
C6SVL1_SOYBN6.5e-11093.06Ribosomal protein OS=Glycine max GN=GLYMA_12G184900 PE=2 SV=1[more]
A0A0B2R114_GLYSO6.5e-11093.06Ribosomal protein OS=Glycine soja GN=glysoja_026213 PE=3 SV=1[more]
C6T552_SOYBN2.5e-10992.59Ribosomal protein (Fragment) OS=Glycine max GN=GLYMA_13G316400 PE=2 SV=1[more]
BLAST of Cucsa.199730 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22440.11.5e-10588.48 Ribosomal protein L1p/L10e family[more]
AT1G08360.11.9e-10587.50 Ribosomal protein L1p/L10e family[more]
AT2G27530.13.6e-10486.11 Ribosomal protein L1p/L10e family[more]
AT2G42650.16.8e-1022.61 Ribosomal protein L1p/L10e family[more]
AT3G58660.11.2e-0927.18 Ribosomal protein L1p/L10e family[more]
BLAST of Cucsa.199730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443440|ref|XP_004139485.1|3.0e-116100.00PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus][more]
gi|659071695|ref|XP_008461453.1|1.5e-11599.54PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo][more]
gi|659117410|ref|XP_008458587.1|2.0e-11295.37PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo][more]
gi|351721216|ref|NP_001236946.1|9.3e-11093.06uncharacterized protein LOC100305550 [Glycine max][more]
gi|356550103|ref|XP_003543429.1|3.5e-10992.59PREDICTED: 60S ribosomal protein L10a [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002143Ribosomal_L1
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR016095Ribosomal_L1_3-a/b-sand
IPR023673Ribosomal_L1_CS
IPR023674Ribosomal_L1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.199730.1Cucsa.199730.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002143Ribosomal protein L1PIRPIRSF002155RPL1p_RPL1a_RPL10e_RPL1ocoord: 1..216
score: 4.5
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwichGENE3DG3DSA:3.30.190.20coord: 152..215
score: 1.6E-49coord: 6..60
score: 1.6
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3DG3DSA:3.40.50.790coord: 62..151
score: 6.3
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 116..135
scor
IPR023674Ribosomal protein L1-likeunknownSSF56808Ribosomal protein L1coord: 21..216
score: 5.89
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 1..216
score: 2.6E
NoneNo IPR availablePANTHERPTHR23105:SF55SUBFAMILY NOT NAMEDcoord: 1..216
score: 2.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.199730Csa1G163140Cucumber (Chinese Long) v2cgycuB305
Cucsa.199730MELO3C004713Melon (DHL92) v3.5.1cgymeB365
Cucsa.199730ClCG01G012240Watermelon (Charleston Gray)cgywcgB370
Cucsa.199730CSPI01G14690Wild cucumber (PI 183967)cgycpiB318
Cucsa.199730CmaCh13G003060Cucurbita maxima (Rimu)cgycmaB0594
Cucsa.199730MELO3C004713.2Melon (DHL92) v3.6.1cgymedB361
Cucsa.199730CsaV3_1G014820Cucumber (Chinese Long) v3cgycucB322
Cucsa.199730Cla97C01G011580Watermelon (97103) v2cgywmbB373
Cucsa.199730Bhi08G000049Wax gourdcgywgoB422
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.199730Bottle gourd (USVL1VR-Ls)cgylsiB343