Cucsa.196820 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.196820
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Homeobox protein knotted-1, putative
Location	scaffold01357 : 374143 .. 376031 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTCTTTACAGTCTCAATCTCCTCGCCAGTAACTCTCATCACTCATCTTCAACGACCACGTTGGAGACTCTTGCCATTCGGATGGCTTCTTCCGATTATTCTCACTCTCTTACGGATTTCGAATCGGAACATTTCCTGCCGTTTTCGTCGGCGGCCTCCAACACTGCTATTGTGGCGGAGAAGATGAAAACAGCTTGTGCTATTTCCGAGGAGGAGTCCGCCGGTGTAATTAGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTCGTCGATGCGTTTTTGAACTGCCAAAAGGTGGTTTAATTTTCTATTATGAGATCTAAGAAAGCGACATTTATAAGGTTTGAAGACATGCAATAATGCTCGCGGCTTTGGATGTTGAGGAACGAAGGAAAATTCCTAAAAATTCGTTTGAATTATAATTTCTCTACACCGATATTGGTTGACCATGTCAAGCTTATAATTCAGTCGTTTTACATTTGTTTTCATCTTGAATAATCGTGAAGTTTTAGTTCATCTCCATTTTTTTAGAGTAAGATTCCAGTACATCGCATCTCAGTAAGGGGAAAAACGAAACGAAAACCGATGATACTAGTCGGAAAATATCAACAGTACTTTCGAGTCTAAGTTATGCGATCTACAGTTTAATCTGTTTCAGTGTAGAAATTCGTTTAGTTTTTCTGATTCAATCCTTTGTGGCCTTTTCAGGTCAGCGCACCGCCGGAAGTTGCTAAAATTCTAGACCAATACAACCGTGGTAATAACATCGGCAATGAAAATCCCGGCGTTTCAACTTGCTTGGGTACTGATCCCGAACTTGACGAATTCATGGTATTTACCTTGCTTTTGCCTTTAGCAGTTGATTGGACGTCACTATTAGATAGTTTGTATTTTGATTAGTTTAAGTTACAATTTGGAACAGGAAATATTCTGCGAGCTATTAGCCAAATACGAGTTGGATCTGTATCAGCCGTTGGAGGAAGCATCTGCCTTCCTTAAGAACATGGAAAGGCAGTTAAACTTGCTCTGTGAGGACACAACCAGAGGCTACGTTTCCGGTTCGTCATTCTCCCTCTTTCATAATATACCACTATCTGTTGATTTGATTTCTTATTCTATGAGTTTGTGTTTTTGTGGGATTTATTATTTTCTGCTTTTTCACTGAGGTGTAGGGGCCAACCCTATCGTAGAATGACAGTTTTTTTGTTTCTTTAAATTGATTTCTTGATTGCAAAAGGATGGTGGACAATGATTAGATGCATTCTCAATTTTTTTTTCCAATACTTATGCATCGACCCATTGAAAGGGTTTAATTTAAAAAATATACTCAAAATAGTTTTTAATAAAATTTCAGATTCATAGTGTTAATGATAGAATGATATGATAACTGAGATAGTACTGATTATCATAAATATAATTTAAAATTTTTACTATACATTATGTAAATATTTTTGTTTTTGTTAGTTTTAAAACGGCTTCATCTTTAAATAAAGACTGAAAAACTAATTTAATTGAAAATTTCTTCTAAAAAATTATGTCTTTAATTTATTGTATTATAACAAAAGACATAATCAGAACTCTAAAAAGTTGATGATGATTGTGCAAATGTTCGTGAAAGTTGGTTTCGATCTTTACAAAATTAAATAGTTGGAATTGGTTTGGAAATGAAATAGGTAGAGATGAGATCACATCCTATCTTGGCCTCGTGAATATCTTTAGGTAGCAATGCTTTTACATCTGTCTCATTGCCATTTAAAAGAAGAAAAATAATGCTAGTCAACAACAAAACCCTAGAAACTATTATACATTGTTTCTAGTAGTAAAAAAAAAACATATTCTCAATAATAGCGGAAGATGGAATTTTTCGAATAAATGTATAA

mRNA sequence

ATGGCGGGTCTTTACAGTCTCAATCTCCTCGCCAGTAACTCTCATCACTCATCTTCAACGACCACGTTGGAGACTCTTGCCATTCGGATGGCTTCTTCCGATTATTCTCACTCTCTTACGGATTTCGAATCGGAACATTTCCTGCCGTTTTCGTCGGCGGCCTCCAACACTGCTATTGTGGCGGAGAAGATGAAAACAGCTTGTGCTATTTCCGAGGAGGAGTCCGCCGGTGTAATTAGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTCGTCGATGCGTTTTTGAACTGCCAAAAGGTCAGCGCACCGCCGGAAGTTGCTAAAATTCTAGACCAATACAACCGTGGTAATAACATCGGCAATGAAAATCCCGGCGTTTCAACTTGCTTGGGTACTGATCCCGAACTTGACGAATTCATGGAAATATTCTGCGAGCTATTAGCCAAATACGAGTTGGATCTGTATCAGCCGTTGGAGGAAGCATCTGCCTTCCTTAAGAACATGGAAAGGCAGTTAAACTTGCTCTGTGAGGACACAACCAGAGGCTACGTTTCCGCGGAAGATGGAATTTTTCGAATAAATGTATAA

Coding sequence (CDS)

ATGGCGGGTCTTTACAGTCTCAATCTCCTCGCCAGTAACTCTCATCACTCATCTTCAACGACCACGTTGGAGACTCTTGCCATTCGGATGGCTTCTTCCGATTATTCTCACTCTCTTACGGATTTCGAATCGGAACATTTCCTGCCGTTTTCGTCGGCGGCCTCCAACACTGCTATTGTGGCGGAGAAGATGAAAACAGCTTGTGCTATTTCCGAGGAGGAGTCCGCCGGTGTAATTAGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTCGTCGATGCGTTTTTGAACTGCCAAAAGGTCAGCGCACCGCCGGAAGTTGCTAAAATTCTAGACCAATACAACCGTGGTAATAACATCGGCAATGAAAATCCCGGCGTTTCAACTTGCTTGGGTACTGATCCCGAACTTGACGAATTCATGGAAATATTCTGCGAGCTATTAGCCAAATACGAGTTGGATCTGTATCAGCCGTTGGAGGAAGCATCTGCCTTCCTTAAGAACATGGAAAGGCAGTTAAACTTGCTCTGTGAGGACACAACCAGAGGCTACGTTTCCGCGGAAGATGGAATTTTTCGAATAAATGTATAA

Protein sequence

MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIVAEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCEDTTRGYVSAEDGIFRINV*

Homology

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BLAST of Cucsa.196820 vs. Swiss-Prot
Match: KNAT2_ARATH (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 1


Query: 19  STTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIVAEKMKTACAISEEESAGV 78
           ST      A  M  SDY   +     ++   F S    TA+ +E +       +  S  V
Sbjct: 9   STEDYSEKATLMMPSDYQSLICSTTGDNQRLFGSDELATALSSELLPRIRKAEDNFSLSV 68

Query: 79  IRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVSTCLGTDPEL 138
           I++KIASHPLYP+L+  +++CQKV AP E+A IL++  R N++   +    +C G DPEL
Sbjct: 69  IKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPLSCFGADPEL 128

Query: 139 DEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCEDTTRGYVSAEDG 192
           DEFME +C++L KY+ DL +P +EA+ F+  +E QL  LC         ++DG
Sbjct: 129 DEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASATALSDDG 181

[Close]

BLAST of Cucsa.196820 vs. Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLP--FSSAASNTA 60
           M G+Y+ +     S  S    + E+L   M  SDY   L     E+ +   F S    + 
Sbjct: 1   MDGMYNFHSAGDYSDKSVLMMSPESL---MFPSDYQALLCSSAGENRVSDVFGSDELLSV 60

Query: 61  IVAEKMKTACAISEE-------ESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKI 120
            V+     A +I+ E        S  VI+AKIA HP YP+L+ A+++CQKV APPE+A +
Sbjct: 61  AVSALSSEAASIAPEIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKVGAPPEIACL 120

Query: 121 LDQYNRGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNME 180
           L++  R +++  +    S+C G DPELDEFME +C++L KY+ DL +P +EA+ FL  +E
Sbjct: 121 LEEIQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIE 180

Query: 181 RQLNLLCEDTTRGYVSAEDGI 193
            QL  LC         +EDG+
Sbjct: 181 MQLRNLCTGVESARGVSEDGV 198

[Close]

BLAST of Cucsa.196820 vs. Swiss-Prot
Match: KNOS1_ORYSJ (Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-21
Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 53  AASNTAIVAEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKIL 112
           AAS  + V   +      S  +   +++A+IA HP YP L+ A++ C+KV APPEVA +L
Sbjct: 17  AASEASGVGVVVGGGGGSSSSDLTELMKAQIAGHPRYPTLLSAYIECRKVGAPPEVASLL 76

Query: 113 DQYNRGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMER 172
            +  R    G    G    +G DPELDEFME +C +L +Y+ +L +P +EA++FL +++ 
Sbjct: 77  KEIGRERRAGGGGGGAGQ-IGVDPELDEFMEAYCRVLVRYKEELSRPFDEAASFLSSIQT 136

Query: 173 QLNLLCEDTT 183
           QL+ LC   T
Sbjct: 137 QLSNLCSGAT 145

[Close]

BLAST of Cucsa.196820 vs. Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 71  SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQY--NRGNNIGNENPGV 130
           S   S+  ++AKI +HP Y +L+ A++NCQKV APPEV   L++   +     G +    
Sbjct: 116 SSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAG 175

Query: 131 STCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLL 178
           S+C+G DP LD+FME +CE+L KYE +L +PL+EA  FL+ +E Q   L
Sbjct: 176 SSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNL 224

[Close]

BLAST of Cucsa.196820 vs. Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-19
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1


Query: 71  SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVST 130
           S   S+  ++AKI +HP Y +L+ A++NCQKV APPEV   L++          + G + 
Sbjct: 113 SSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTG 172

Query: 131 CLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLL 178
           CLG DP LD+FME +CE+L KYE +L +P +EA  FL+ +E Q   L
Sbjct: 173 CLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSL 219

[Close]

BLAST of Cucsa.196820 vs. TrEMBL
Match: A0A0A0LU96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004870 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.3e-100
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60
           MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV
Sbjct: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60

Query: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120
           AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN
Sbjct: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120

Query: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180
           IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED
Sbjct: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180

Query: 181 TTRGYVS 188
           TTRGYVS
Sbjct: 181 TTRGYVS 187

[Close]

BLAST of Cucsa.196820 vs. TrEMBL
Match: D7SHP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g08710 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32
Identity = 83/193 (43.01%), Postives = 117/193 (60.62%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60
           M  LY L+  +S+ +H       E L   ++ S Y +  +      F      ++++ +V
Sbjct: 1   MDQLYGLHSPSSSDYHHPPPFPPENL---ISPSHYPNFNSPAPFPIFGSDQLLSASSLVV 60

Query: 61  AEKMKTACAI----SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYN 120
           ++       I    S EE +  IRAKIA+HPLYPKL+ A++ CQKV APPEVA +L++  
Sbjct: 61  SDAASMVAEIQGGGSGEEVSSAIRAKIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIR 120

Query: 121 RGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNL 180
           RG+ +   N  VSTCLG DPELDEFME +C++L KY+ DL +P +EA+AFL N+E QLN 
Sbjct: 121 RGSELCRRN-AVSTCLGADPELDEFMETYCDILVKYKSDLARPFDEATAFLNNIETQLNT 180

Query: 181 LCEDTTRGYVSAE 190
           LC   +R YVS E
Sbjct: 181 LCNGASRSYVSDE 189

[Close]

BLAST of Cucsa.196820 vs. TrEMBL
Match: B9RAZ8_RICCO (Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1510310 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-32
Identity = 86/201 (42.79%), Postives = 123/201 (61.19%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTD-------FESEHFLPFSSA 60
           M  LY L+   S+ H+S      E L +  A  DY H+ +          S+H  P SSA
Sbjct: 1   MDELYGLHSTCSD-HYSMQQVVPENL-VPSAPVDY-HAFSSPGVSFPLLGSDHLFPGSSA 60

Query: 61  ASNTAIVAEKMKTACAI----SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVA 120
            S+ A +  +M+   +     SEEE +  IRAKIA+HPLYPKL+ A+++CQKV APPE+A
Sbjct: 61  VSDAASMVAEMQRGVSGGGGGSEEEVSSAIRAKIAAHPLYPKLLQAYIDCQKVGAPPEMA 120

Query: 121 KILDQYNRGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKN 180
            +LD+  + +++      +++CLG DPELDEFME +C++L KY+ DL +P  EA+ FL +
Sbjct: 121 YMLDEIRQESDLSKRPSTITSCLGADPELDEFMETYCDILVKYKSDLSRPFNEATTFLND 180

Query: 181 MERQLNLLCEDTT-RGYVSAE 190
           +E QLN LC  TT R +VS E
Sbjct: 181 IEAQLNTLCNTTTSRTHVSDE 198

[Close]

BLAST of Cucsa.196820 vs. TrEMBL
Match: A0A067KGV6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11450 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.1e-31
Identity = 67/119 (56.30%), Postives = 92/119 (77.31%), Query Frame = 1


Query: 71  SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVST 130
           SEEE +  IRAKIASHPLYPKL++A+++CQKV APPE+A +LD+  RG+ + + +  V+T
Sbjct: 15  SEEEVSSAIRAKIASHPLYPKLLEAYIDCQKVGAPPEMAYLLDEIRRGD-LSSRSTVVAT 74

Query: 131 CLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCEDTTRGYVSAE 190
           CL TDPELDEFME +C++L KY+ DL +P  EA+ FL ++E QLN LC  ++R +VS E
Sbjct: 75  CLDTDPELDEFMETYCDILVKYKSDLSRPFNEATTFLNDVEAQLNTLCNTSSRTHVSDE 132

[Close]

BLAST of Cucsa.196820 vs. TrEMBL
Match: F6GV99_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01750 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 1


Query: 71  SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVST 130
           S +E +  IR +IA+HPLYPKL+ A++ CQKV APPEVA +L++  RG+ +   N  VST
Sbjct: 72  SGDEVSSAIRTQIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIRRGSELCRRNT-VST 131

Query: 131 CLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCEDTTRGYVSAE 190
           CLG DPELDEFME +C +L KY+ DL +P +EA+AFL N+E QLN LC   +R YVS E
Sbjct: 132 CLGADPELDEFMETYCNVLMKYKSDLARPFDEATAFLNNIETQLNTLCNGASRSYVSDE 189

[Close]

BLAST of Cucsa.196820 vs. TAIR10
Match: AT1G70510.1 (AT1G70510.1 KNOTTED-like from Arabidopsis thaliana 2)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-30
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 1


Query: 19  STTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIVAEKMKTACAISEEESAGV 78
           ST      A  M  SDY   +     ++   F S    TA+ +E +       +  S  V
Sbjct: 9   STEDYSEKATLMMPSDYQSLICSTTGDNQRLFGSDELATALSSELLPRIRKAEDNFSLSV 68

Query: 79  IRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVSTCLGTDPEL 138
           I++KIASHPLYP+L+  +++CQKV AP E+A IL++  R N++   +    +C G DPEL
Sbjct: 69  IKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPLSCFGADPEL 128

Query: 139 DEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCEDTTRGYVSAEDG 192
           DEFME +C++L KY+ DL +P +EA+ F+  +E QL  LC         ++DG
Sbjct: 129 DEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASATALSDDG 181

[Close]

BLAST of Cucsa.196820 vs. TAIR10
Match: AT1G23380.2 (AT1G23380.2 KNOTTED1-like homeobox gene 6)

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-27
Identity = 74/203 (36.45%), Postives = 110/203 (54.19%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLP--FSSAASNTA 60
           M G+Y+ +     S  S    + E+L   M  SDY   L     E+ +   F S    + 
Sbjct: 1   MDGMYNFHSAGDYSDKSVLMMSPESL---MFPSDYQALLCSSAGENRVSDVFGSDELLSV 60

Query: 61  IVAEKMKTACAISEE-------ESAGVIRAKIASHPLYPKLVDAFLNCQK--VSAPPEVA 120
            V+     A +I+ E        S  VI+AKIA HP YP+L+ A+++CQK  V APPE+A
Sbjct: 61  AVSALSSEAASIAPEIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKKQVGAPPEIA 120

Query: 121 KILDQYNRGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKN 180
            +L++  R +++  +    S+C G DPELDEFME +C++L KY+ DL +P +EA+ FL  
Sbjct: 121 CLLEEIQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNK 180

Query: 181 MERQLNLLCEDTTRGYVSAEDGI 193
           +E QL  LC         +EDG+
Sbjct: 181 IEMQLRNLCTGVESARGVSEDGV 200

[Close]

BLAST of Cucsa.196820 vs. TAIR10
Match: AT1G62360.1 (AT1G62360.1 KNOX/ELK homeobox transcription factor)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1


Query: 71  SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVST 130
           S   S+  ++AKI +HP Y +L+ A++NCQKV APPEV   L++          + G + 
Sbjct: 113 SSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTG 172

Query: 131 CLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLL 178
           CLG DP LD+FME +CE+L KYE +L +P +EA  FL+ +E Q   L
Sbjct: 173 CLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSL 219

[Close]

BLAST of Cucsa.196820 vs. TAIR10
Match: AT4G08150.1 (AT4G08150.1 KNOTTED-like from Arabidopsis thaliana)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-17
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 1


Query: 79  IRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNEN--PGVSTCLGTDP 138
           ++AKI +HP Y  L+ A+L+CQK+ APP+V   +    +      +   P VS     DP
Sbjct: 134 MKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSAS-SRDP 193

Query: 139 ELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCE 180
           ELD+FME +C++L KY  +L +P++EA  F++ +E QL++LC+
Sbjct: 194 ELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQ 235

[Close]

BLAST of Cucsa.196820 vs. NCBI nr
Match: gi|778655617|ref|XP_011656609.1| (PREDICTED: homeobox protein knotted-1-like 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 375.2 bits (962), Expect = 7.2e-101
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60
           MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV
Sbjct: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60

Query: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120
           AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN
Sbjct: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120

Query: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180
           IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED
Sbjct: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180

Query: 181 TTRGYVSAED 191
           TTRGYVSA++
Sbjct: 181 TTRGYVSADN 190

[Close]

BLAST of Cucsa.196820 vs. NCBI nr
Match: gi|778655622|ref|XP_011656688.1| (PREDICTED: homeobox protein knotted-1-like 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 375.2 bits (962), Expect = 7.2e-101
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60
           MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV
Sbjct: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60

Query: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120
           AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN
Sbjct: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120

Query: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180
           IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED
Sbjct: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180

Query: 181 TTRGYVSAED 191
           TTRGYVSA++
Sbjct: 181 TTRGYVSADN 190

[Close]

BLAST of Cucsa.196820 vs. NCBI nr
Match: gi|449440664|ref|XP_004138104.1| (PREDICTED: homeobox protein knotted-1-like 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 4.7e-100
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60
           MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV
Sbjct: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60

Query: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120
           AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN
Sbjct: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120

Query: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180
           IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED
Sbjct: 121 IGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCED 180

Query: 181 TTRGYVS 188
           TTRGYVS
Sbjct: 181 TTRGYVS 187

[Close]

BLAST of Cucsa.196820 vs. NCBI nr
Match: gi|659129187|ref|XP_008464567.1| (PREDICTED: homeobox protein knotted-1-like 2 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 8.0e-76
Identity = 154/189 (81.48%), Postives = 161/189 (85.19%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60
           MAGLY L+ LA+NS+HSSSTTTLETL I   S+DYSH L DFE+EH  PFSS AS TAI 
Sbjct: 33  MAGLYGLHPLAANSYHSSSTTTLETLPIPTHSADYSHPLPDFEAEHSRPFSSVASKTAIT 92

Query: 61  AEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNN 120
           AE  KTACAI EEESAGVIRAKIASHPLYPKLVDAFLNCQKV APPEVAKILDQ NRGNN
Sbjct: 93  AET-KTACAIPEEESAGVIRAKIASHPLYPKLVDAFLNCQKVGAPPEVAKILDQCNRGNN 152

Query: 121 I-GNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCE 180
           I G ENP VSTCLGTDPELDEFM I C LLAKYELDL QPLEEAS+FLKNME QLNLLCE
Sbjct: 153 IIGKENPCVSTCLGTDPELDEFMRIICGLLAKYELDLCQPLEEASSFLKNMEMQLNLLCE 212

Query: 181 DTTRGYVSA 189
            T RGYVS+
Sbjct: 213 GTNRGYVSS 220

[Close]

BLAST of Cucsa.196820 vs. NCBI nr
Match: gi|225456981|ref|XP_002282076.1| (PREDICTED: homeobox protein knotted-1-like 6 [Vitis vinifera])

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 83/193 (43.01%), Postives = 117/193 (60.62%), Query Frame = 1


Query: 1   MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIV 60
           M  LY L+  +S+ +H       E L   ++ S Y +  +      F      ++++ +V
Sbjct: 1   MDQLYGLHSPSSSDYHHPPPFPPENL---ISPSHYPNFNSPAPFPIFGSDQLLSASSLVV 60

Query: 61  AEKMKTACAI----SEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYN 120
           ++       I    S EE +  IRAKIA+HPLYPKL+ A++ CQKV APPEVA +L++  
Sbjct: 61  SDAASMVAEIQGGGSGEEVSSAIRAKIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIR 120

Query: 121 RGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNL 180
           RG+ +   N  VSTCLG DPELDEFME +C++L KY+ DL +P +EA+AFL N+E QLN 
Sbjct: 121 RGSELCRRN-AVSTCLGADPELDEFMETYCDILVKYKSDLARPFDEATAFLNNIETQLNT 180

Query: 181 LCEDTTRGYVSAE 190
           LC   +R YVS E
Sbjct: 181 LCNGASRSYVSDE 189

The following BLAST results are available for this feature:

BLAST of Cucsa.196820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KNAT2_ARATH	1.3e-28	37.57	Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3	[more]
KNAT6_ARATH	1.4e-27	36.82	Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1	[more]
KNOS1_ORYSJ	4.3e-21	39.23	Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 S...	[more]
HSBH1_SOYBN	1.1e-19	44.04	Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1	[more]
STM_ARATH	3.1e-19	43.93	Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2	[more]

BLAST of Cucsa.196820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU96_CUCSA	3.3e-100	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004870 PE=4 SV=1	[more]
D7SHP3_VITVI	1.3e-32	43.01	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g08710 PE=4 SV=...	[more]
B9RAZ8_RICCO	1.7e-32	42.79	Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1510310 PE=4 SV...	[more]
A0A067KGV6_JATCU	7.1e-31	56.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11450 PE=4 SV=1	[more]
F6GV99_VITVI	2.1e-30	56.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01750 PE=4 SV=...	[more]

BLAST of Cucsa.196820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70510.1	7.1e-30	37.57	KNOTTED-like from Arabidopsis thaliana 2	[more]
AT1G23380.2	2.5e-27	36.45	KNOTTED1-like homeobox gene 6	[more]
AT1G62360.1	1.7e-20	43.93	KNOX/ELK homeobox transcription factor	[more]
AT4G08150.1	1.8e-17	39.81	KNOTTED-like from Arabidopsis thaliana	[more]

BLAST of Cucsa.196820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655617\|ref\|XP_011656609.1\|	7.2e-101	98.95	PREDICTED: homeobox protein knotted-1-like 2 isoform X1 [Cucumis sativus]	[more]
gi\|778655622\|ref\|XP_011656688.1\|	7.2e-101	98.95	PREDICTED: homeobox protein knotted-1-like 2 isoform X3 [Cucumis sativus]	[more]
gi\|449440664\|ref\|XP_004138104.1\|	4.7e-100	100.00	PREDICTED: homeobox protein knotted-1-like 2 isoform X2 [Cucumis sativus]	[more]
gi\|659129187\|ref\|XP_008464567.1\|	8.0e-76	81.48	PREDICTED: homeobox protein knotted-1-like 2 [Cucumis melo]	[more]
gi\|225456981\|ref\|XP_002282076.1\|	1.9e-32	43.01	PREDICTED: homeobox protein knotted-1-like 6 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005540	KNOX1
IPR005541	KNOX2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.196820.1	Cucsa.196820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005540	KNOX1	PFAM	PF03790	KNOX1	coord: 79..117 score: 1.4
IPR005540	KNOX1	SMART	SM01255	KNOX1_2	coord: 77..121 score: 6.1
IPR005541	KNOX2	PFAM	PF03791	KNOX2	coord: 132..178 score: 3.3
IPR005541	KNOX2	SMART	SM01256	KNOX2_2	coord: 128..179 score: 7.4
None	No IPR available	unknown	Coil	Coil	coord: 160..180 scor
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 71..192 score: 7.0
None	No IPR available	PANTHER	PTHR11850:SF99	HOMEOBOX PROTEIN KNOTTED-1-LIKE 2-RELATED	coord: 71..192 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.196820	Cla019201	Watermelon (97103) v1	cgywmB390
Cucsa.196820	MELO3C026289	Melon (DHL92) v3.5.1	cgymeB364
Cucsa.196820	ClCG06G017080	Watermelon (Charleston Gray)	cgywcgB368
Cucsa.196820	ClCG08G017830	Watermelon (Charleston Gray)	cgywcgB369
Cucsa.196820	MELO3C026289.2	Melon (DHL92) v3.6.1	cgymedB359
Cucsa.196820	Cla97C06G126730	Watermelon (97103) v2	cgywmbB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.196820	Melon (DHL92) v3.6.1	cgymedB354
Cucsa.196820	Silver-seed gourd	carcgyB0423
Cucsa.196820	Silver-seed gourd	carcgyB1123
Cucsa.196820	Silver-seed gourd	carcgyB1162
Cucsa.196820	Cucumber (Chinese Long) v3	cgycucB314
Cucsa.196820	Cucumber (Chinese Long) v3	cgycucB316
Cucsa.196820	Watermelon (97103) v2	cgywmbB363
Cucsa.196820	Watermelon (97103) v2	cgywmbB371
Cucsa.196820	Wax gourd	cgywgoB405
Cucsa.196820	Wax gourd	cgywgoB410
Cucsa.196820	Wax gourd	cgywgoB412
Cucsa.196820	Wax gourd	cgywgoB417
Cucsa.196820	Cucumber (Gy14) v1	cgycgyB038
Cucsa.196820	Cucurbita maxima (Rimu)	cgycmaB0573
Cucsa.196820	Cucurbita maxima (Rimu)	cgycmaB0576
Cucsa.196820	Cucurbita maxima (Rimu)	cgycmaB0582
Cucsa.196820	Cucurbita maxima (Rimu)	cgycmaB0588
Cucsa.196820	Cucurbita moschata (Rifu)	cgycmoB0575
Cucsa.196820	Cucurbita moschata (Rifu)	cgycmoB0578
Cucsa.196820	Cucurbita moschata (Rifu)	cgycmoB0582
Cucsa.196820	Cucurbita moschata (Rifu)	cgycmoB0588
Cucsa.196820	Wild cucumber (PI 183967)	cgycpiB312
Cucsa.196820	Wild cucumber (PI 183967)	cgycpiB310
Cucsa.196820	Wild cucumber (PI 183967)	cgycpiB317
Cucsa.196820	Cucumber (Chinese Long) v2	cgycuB299
Cucsa.196820	Cucumber (Chinese Long) v2	cgycuB301
Cucsa.196820	Melon (DHL92) v3.5.1	cgymeB359
Cucsa.196820	Watermelon (Charleston Gray)	cgywcgB357
Cucsa.196820	Watermelon (Charleston Gray)	cgywcgB361
Cucsa.196820	Watermelon (97103) v1	cgywmB379
Cucsa.196820	Cucurbita pepo (Zucchini)	cgycpeB0553
Cucsa.196820	Cucurbita pepo (Zucchini)	cgycpeB0564
Cucsa.196820	Cucurbita pepo (Zucchini)	cgycpeB0556
Cucsa.196820	Cucurbita pepo (Zucchini)	cgycpeB0559
Cucsa.196820	Bottle gourd (USVL1VR-Ls)	cgylsiB335
Cucsa.196820	Bottle gourd (USVL1VR-Ls)	cgylsiB342