Cucsa.195110 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.195110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA binding family protein, putative
Location	scaffold01349 : 90361 .. 98642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTGTTTCTCGTTCATCTCAAATCCCTCTCCCTCAGGCCTCAGCCATGTGCTCTGATAAAATCCGTTCTGGGGTTTAATTTCCATCCGCTTCCATTAGTTAATCGCTCCGTCGAGTTTTCACAAGGAGTCGGTGTGGAACCAGCTAGGGTTCATGGAGGCTCCTTATTTGAGGGTTTCAATATCAATTGAACTCCGTTGTTAGTGAGCCTGTTTCTTCTTCTGTATATTCAAGTTTCGTGAAATGAACTCGTCGGAGATGGGGAGTGAGGATCGTGTCGATGATCGTACGTTCAAGGTTGATTTTACTGGCGACGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGTACGGACTACTCTAGCCTTTTAACATTCACGTACCTGAGTGGTTTTTGCCAACCAATGAGATGTCTGGGTGTCTTACAATTTCTCTTAGGTTATTCATGTGGAGGCCATCATCTTCTTCTTAACTGGTTGTTGAGGAATTTGTTTCGTTAAAGAAATGGGAATTTAGTATTCGCGGGTTGTTATATATTTGCTATTGCCCAATGGAAATAACATATAGTTCTGATTCTTTTATCTGTAAGTAATTACGTGCCTTAGGGGAAGTTTCTCTTATCTACTAAGGAATTCGCCCAAGGTTTATGGTTGATGTTAATGAGATGTAATCCAACTCAATGCCCATATATTGTTCTTCATCCAAAGCAAACTGCATCTTATAGCCTATTTAAAAATTTGGTTAGCCGTTATACTGTTTATCTGTCCGCCCCTCTTTCAGAAAACCTCTCTGTGCTAGGTGAACTTGCAACTGAGATAATTCCTTTAGCCTTTGATTGGCGGCTGTTCCCATTTCCCATCGATAAGATATAAGTACATTGAATTATTGAAATGTATAAAAAAGGAAGATTCTAATTAGCAAACAAATATTAGTGAAGTTACAGAATAGCATATAATTATAACCCAAATGTGATGATTAAAATAATGTCTCCTAAATCAGCTAAGAAGAGTTGTTACTAACCTTGTAGAGGCAAGAGATTGAGATTGATTGATTGGATGAAAACATGTCGTGCTCTTTGTATTTGGACTAGACTTTTCTGTTGAGGGTGTATCGATAATATTATTGTGAAGAAAGATCTTGGAGTGCTTGTAATATCTTACATGAGGGTGTTTCAAGAGTTGTAAAAGAATTTAGTGGCAAATCCATTGTGTTTTTTTATCTACTCCCAAAATATAAGATAGCTTTTATAACTTTCTCAACCCTAAAGTTAGCTTCTATCTTAACCAAATCGGTCTTGGGCGGACTTAGGTTGGGATCTGATCTGAAGTGGTTGGCTTAAATTTTACCACCTCTTTCTTTGTGTATGGATACTGTAGAAGGCAGGAATTGCCTTTTGCATGTGTGTGGAAAGAGATATCGTTATACTCTCCTTCCCTTCTTGATATGTCTCCTCCTGCATACTATGTGATTTGTATCTTCACATCCAAAAAAaTTCTTTCCAAATTGGATATCTGAGTTGGTATTTGAGATTAGTTTTAGAATATTGGTAGCTTAAAGTAGGGAAAAGTTTTGCAAGTGGTCTAGAGCTTTGGGATCAACACGAACCTCAGCTTTTTTGAAGGTTTCATCTTTTCAGCAAGCTTTACATCTTCTTTAATTTGCAAAGGTTAAGTGGAGTTCCACCAACTTTTGAAAGTCTTTTGAGAATTGTTGTTCTTGAGCCTCATATTTATATATTTTAAGGACAGGATCCCGTTTGATGCCAGAAGATTCTAGAAGGGTTAATTGGTTGTTAGAGGAGGTGTTTTAACTCTAGAATTTGAGATTTTGAGGAACCAATCATGGGGTACTAGAATTTACTAACGATGAACAAAAGAAGCCATGTTGGATCAAGTTAACTTGGCTCTTCTACAAGGGAAGGATATCACTTTTGGCAGGGCTTTTGGAGATCAATTTTTTCGTCTCTTCTAGAAGAAGCAAAAAATAGCAGAGGAGAACATAATGCTTTAAGAGAAAGCTCAGCCATAACAAGGTTCCCAAGATTTTCCAATTTTCTCAAAAAAGAAAaCTTGACTGGGGCAACTTGACCAACATTTTTGTTTtATCACTGAGCTATAACTGTTATGGAAGCCATGGAATCCAATTTTTGAAGTCTTGTGAAATCTTCCATGGATGAAAAAGTGCTTACGGAAGAATCAAGACTCCATTAGTTCAGGGACACATAATTTTTATCCATCTTTCATATGAAAGGGATGATAAATTCCTAGAATGCTTGATGGAGTCCAGCCTTCTCTTAGGCGGAGGAGTCTAATTTGGTTCATTCTGCTTGATCTGAGGATTGCTGTATTACATGGACTGGTTGTGGCTATTAGCTCTTGGAGAGTCGTGGGATTTCTGTACTAGTTGTTCCTTTAGAGTTTTCTTCAAACCACACTGGAGACATTCTTCTTTTGAAGATTGCATTTCCTTCGAACTCATTCTTCCAATTTTCATGTTCTTAAATCCCTTCCTTCTCAGAAAAAGTTCTATGAACATGTTTTCATCTTTTTGGAATTTGAGAGGCTTTTACTTGCTGTCTTGTGCACTTCTGAGTCATCCTAAGTAGAAGGCATTATTTAATATAATGGACATCAATGGGATCCAGTGGAGTTAGATATCTCCACAAAAAGTACCAATTTTTTTTTTTTttGAAATCTTAGAGCTCTTTACTTGCTGTCTAGTGCACTCTTGAGTCACGTTAAATAAAaGATGTTATAATTTACCGTAGGTATCTTTGAGGTATTTGAAGGCTTTCAAATGCTGTGAATACTAGGTGAATTAGTTCATTCTGTTGTCTTGTTGCTAGATAAAGAAAGGTAATTGGAAAACGAGTTTATAATTGTCTGGGGAACTTTTTCCTCTATTTCTGGTTCCCCTGCCTTTACCATTCGTtttCTTTCAAAAATTGTTTTGTGGCCTCTATTCTCTTGCCATTTGGGAGTTCCTCGTCTGTCTCTCTTGGACTCAGTTGTTCCCCATCTGATACAGAAGCTATCTGCCATTTGGGAGTTCCTCGTCTGTCTCTTGGACTCTTGGAATCTTCAGATATTACTGCTCTTCTAACCTTAATTGGTGATTTTGTTGTTTGGGAGGGGAGAAGCTATCTTCGTTTGTGTCGCCTATTCCCTTTGGGTGGGTTTTCCTGTAGTTCTTCGTTTTATTGTCAGCTGAATTCTATGTCTTTAAGTCCTACTACCTTCTCACTTTTTTGGAAGATCATTGTCACAAAGAAGGCTAACTTTTTGTGATGTAGATAGCTTAGTATGGTTACTATTATGGATCGTGTTTGTAAGTTTGTGCCTAAAATCGGGGCCGTCTGGCCCAACGTTACAAATGGGACTACCTGAGGACTTGGATCATCTTCACGTGGTCCTGTTTGTTTGCAAGATTGTTTTAGAGCAGCATTTTTGAGTCATTCTTCTTCAGGTTTGCTTAGTGGAGAACTTGCAGTTCCATGTGCGAGGAGTTGCTCCCCCTGTCCTCTTTTCGTGAAAAAGGGTCTCTTGTTGTGGTTTGCATGTCTATTATGCTATTGTTTGGAGAGTTTGGATGGAAAGGAATAATACAATTTTAAGTAGAGTGGAGCAATCTGTGGGCGAGTTGTGGTCCCTATTAGGTTGCATAGACTTTCAAATGCTGCAAAAACTTTTTGTTTGTAAAGACTTTTGCAATTATCCTTCTTGTTTCATTTTGTTTGACTGGAGCCCACTTAGAGTAGTTGGGATCTGATCTGGGGTTTTGTTGTATTTTTCATGTATTCTTACATTTTTGTCAATAAAATCTCGGGTTTTTTATATTAATTAAAAAAAGTAGTCCATAGAGCTGAATGCTTGGAAAATTATTTTGAGATGTTGGCATTGTTTAGCCTTTGAATATCTTTTTTTCCATTCTCAGGCAGTGCTGTATGAGATTGTGGAAACTTTCTTATCTGCGTTTCTATTTAATTTGGCTTTATACTTCTGTACTTTTTATATACTTGTTTGTTTCTAAAATTGTGTCCATGTTTCAATTTTTCTATATTTATCATAACATGGTTTGAATTTACTTCACAAACTGGGATTTAGAGCGTTTGTTTGAAGAAATCAGATTTGATGAAATATAATGAATGTTATTTGGTAGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAGAGAAGAAGCACAGAATGAACTTAATGTCTTTTTGGCAGACGATAGTCATTCATTTGTATCTTGGTAATTTGATTCTCATCCCTCTTGTTCGTATTTGTAATTTGTGTAGTAAGTTGTGTTGATTCATTCTTGCAGTCAGTTGACTAATTGTTTTAAGCTTCATTTCAATAGGTTGTGGGACCATCTGGCTTCAAGTATGGATTTATATGTGGAGCCGCCTGCTAAAGCTTCTGCCAATGAGGTGCCCACACAAAAGTCTCCAGTAGCAGAACCAGATACAAGAAATAATTCTCACAATCTGGAGTCTGATTCTGAAAGAGGGAAGACTGAAAAATTGTCTAGCAGACGACGTACTAGGGAATGGAGAGGAATTGCTAATGAGGAAACCCGTGTAGTTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCTGGTCATAGGAAAAGGAGCCGGCCTGACGATCATCAAGGCACTGAGGTACTTTTCTAATTTTGTACTAGCCACAGTTAACTGGGTTTTAAAATGTGAACTTTTTCTGGGAGGGGGAACCACCGGCCCCTAGGCCATATTATCTTCCTGGTTGTGAATGTATTCCTTTTGTTGTTTCCTATTAAAGTGAAAATTGATTTTTTTtCCTTTtCCTTTTTGATAAAGCTAAATTTAAATTGGTGAAAGGCAATGGGTAGTGGAGGGTTAGCTGAACAATTTCTTGTTGTTTCTCAGTTTTCAATACAATAGATTTGAAATCTTTAAAACCCACAATTTTTTGTTGAGAACTGCATATCTTTATGTATTTAAAATTTTTAGTATCTCAGTTTAAATAAAGTCCTCAATTATGGTGTCTAAACCTATCTCCTTCATGTGCATGTCTTGTCTTTTTTCCGTCTTTGAACGAACTTTTAATTTCTTCTCCTTGCCATGCCGATATGCTTATGTTTTTCTTAAATCCAAGTTTTtCTTAATGCAATACAACTTTATTGTAATGCACCTTTAGGTGCCTTGGGAGCTTTCTCCTTCCATTTCGTTTATCAATGAAATTGTTTCCCAATCCAAAAGAAAGGTATGCTTGATTAAATTTTACAATTGCTGTACTAAACTACCTTAGTTTCTGGTACTTTTAGTAATTGAAAATAACTTAATCCGGAATATTGGATGGTTTATTGATATGCATTTATTCTAATGGGAAATAAATTCTCACGTATCTTGTTTTACAGAGGGAAGCTGCCTTTCAGGTAAGCATTGCTGCCCCTCGACGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAGGCCCTCTAATGCATCTAAGGAGCCCCATTCAAAACGTCTTCGTTCAGTAGTTTCTGCATCCAATAGTGACACAACTAATCGTCCTAGGAGGCTTCAATCTGTTGCAAAAGTTCCAAATCCAATGGCAACTGTCATCAAGGCTGTGACGGAGGCATCTGAAGATGTGGTCAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTCGTGATATGGATTTAACAGAGTCTAGTGGCCGACCTTCAGAATATGGAGCAACTTTTGTAGAGAACGATGAATATGGGGATATGAATCATTCAGAGGATCGACCATACTCAGCTACCTATCTTGAGAGAGGCAATTATATTGGGAAATATTCTCGTGATGAGCCCATGTTTGAACCTGAAACTGGATTAGCATCAGATTCTACATCTGAAAATGAAGATGTTAATATTCAGGGCCACAGAGTATTTGATGATTCTTGGACTGCCGAATCAGGAGTAAGAAAGGGAAGCAATTTACGGACTGTGGCATTCAGGGCAGTTGAGAATTCTGATGATGAACGTGTGGCACAATATACACAGAAGGATCAACCTTCGTTAGCTGCAAATTCCTCACGTGACATTGTAAATATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCAAGGGCAAATTCCTGAACTTGCTGGTCAAAAGTTTTTGCAGGAGAGTGAGTTACAGGGTACCAGATCGGCTGTGCAAGTTATGGAGAATGGCGAGCCAGTGACCCTTGTTAACCAACGGAAAACACCAGCATCTAACCTTCAAGAAGAGTTCCAGAAACCTCCTTTATCTGCTAATGGTGAGCTCCCTTTTCTGGTGTCTGGCTTTCTGTTTAAATAATAGTTTCCTTGCACGACTCTTTTGTTTATCTCTTTCTCGTTCTATTTTTCCCGTATTTGATCATCAATAATCTGTTTGGGCTcATAATTTATTATTCCCTAGTTAGTAATTCATTTTAAGTAACTTTCTCATGTTACCTAATGCAGGCCAATTTGCTGGCACTCGTCCTTTAGAGGAAGCTGATGCTCGAACCATTTTTGTGAGCAATGTAAGAAGTCACTCATTTTTTGCTTGTCTGAAGAAACTGGCAACTATATACCAACCATCTTACGTTGATTTTTTACATACAGGTTCACTTTGCTGCAACGAAGGATAGCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTTTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTGAGGTGTTTCATTTCTTTATTGTACCTCAGCTATCTTTAATCTCTTTTTGTTTCCTCTACTGGAGACTACAAAGTTTCCTATGTTACGTTTTAATAAaTTGAGCATGTGATTGGAGCAGGTCAGCTTATGTGGAGTTCATGAGAAAAGAATCTGCAGAGAATGCGTTGTCTCTTGATGGGACCTCGTTTATGTCTAGGATTCTAAAGGTATCCGTCATATTTTTAACATTTTTCTTTGTAGTATGAAGCATTACTCCAAAAAGAAGTGTTGGCAAACTTAACCTTTGTTTTTtTtCCTGCTTTTTCTTTACTTCAAGTTAGCATTCGTACCTTTAATATGCTCTTCTTTTTTtGGTTAGGAAGTTGTGTGGGAACCTGACATTCTTTCTTTTTtAAAAAAaTGGATTTTTGTTCAAGGTTTTGGTTGCTTTTCGCATAATCATTGAATTTTTGCTGTTGTTTCCATACCTAACTAAGCAGTGAGCAAAAGTTAAATAAAGTTTCTCGTAAATCTTAAAATGAAAATGGATCTTGAAGCAAACATAAAAGATGTAATTTTTTtCACTTTTGGGCTTTGGTCAACTTGTTTCAACAAGTTTCTTCCGCTGGTATTATTATTTGAACATCTTAATCGTGATGCAAAAACCATGCCACGTGACAACACAACTAGCATGATATGTTTTAGTCAAGTAGCGCACATGTATCAGATTGATTAGAACGAACATTTTGTTGAGGTGTCTGCTGCATTATGTATGTAGTCAACAAATGAAGCTGCAAGTTTGATTGATTAGTCAATTGCAGGTCGTAAGGAAAAATGCTTCACAATTAGAAGGTGCTTCAACTGTTATCTGGCCTCGTGCTGTGCGAGGCTCGCCGTTTCCTACTTCGAGATTTACCAGAGCTCCATTCATGAGGGGTGTCCCTGGTGGATTTAGGGCTCGTCCCCCGATGAAACTCAGGGCCAGGAGCATGCAGTGGAAGCGTGATAATCAGACCACAACTGCTGACAATGGTGCATCTCTCTCTGGTAATTCTATTCCCTCACCTGGTGCTCGTAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGTGGACAAGTAGGAACCACTCGATTGTGAGAAAATTATTTTGCGGAAAGAAAATCACGCAGGTTCTCCCAAAATTTGTTTGTGTTTTGGTGATTCATGATTTTTTGTGCATCAGTGGAGGAGTTTGAGAAAGAAGACTCCAAGTGGGGAAGTTTTAGCAGCAGTTTGTAGGAGGGTTTTTTTTtGTTTtCCTTTTTGTTTCCATTGGGGAATGGAAATTGGTGAGTTTTATAGGTAGGAAGAAACTGATGATGGCGGTTCGGATAAATTCATAATTTTTCTCCCCCTTCCAATTCAGAAATTCTTATTCAGCTTCTAGATTAAAGTTTGTGAATAGAGTAAGAATAGAGACCTTT

mRNA sequence

TTTTTTGTTTCTCGTTCATCTCAAATCCCTCTCCCTCAGGCCTCAGCCATGTGCTCTGATAAAATCCGTTCTGGGGTTTAATTTCCATCCGCTTCCATTAGTTAATCGCTCCGTCGAGTTTTCACAAGGAGTCGGTGTGGAACCAGCTAGGGTTCATGGAGGCTCCTTATTTGAGGGTTTCAATATCAATTGAACTCCGTTGTTAGTGAGCCTGTTTCTTCTTCTGTATATTCAAGTTTCGTGAAATGAACTCGTCGGAGATGGGGAGTGAGGATCGTGTCGATGATCGTACGTTCAAGGTTGATTTTACTGGCGACGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAGAGAAGAAGCACAGAATGAACTTAATGTCTTTTTGGCAGACGATAGTCATTCATTTGTATCTTGGTTGTGGGACCATCTGGCTTCAAGTATGGATTTATATGTGGAGCCGCCTGCTAAAGCTTCTGCCAATGAGGTGCCCACACAAAAGTCTCCAGTAGCAGAACCAGATACAAGAAATAATTCTCACAATCTGGAGTCTGATTCTGAAAGAGGGAAGACTGAAAAATTGTCTAGCAGACGACGTACTAGGGAATGGAGAGGAATTGCTAATGAGGAAACCCGTGTAGTTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCTGGTCATAGGAAAAGGAGCCGGCCTGACGATCATCAAGGCACTGAGAGGGAAGCTGCCTTTCAGGTAAGCATTGCTGCCCCTCGACGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAGGCCCTCTAATGCATCTAAGGAGCCCCATTCAAAACGTCTTCGTTCAGTAGTTTCTGCATCCAATAGTGACACAACTAATCGTCCTAGGAGGCTTCAATCTGTTGCAAAAGTTCCAAATCCAATGGCAACTGTCATCAAGGCTGTGACGGAGGCATCTGAAGATGTGGTCAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTCGTGATATGGATTTAACAGAGTCTAGTGGCCGACCTTCAGAATATGGAGCAACTTTTGTAGAGAACGATGAATATGGGGATATGAATCATTCAGAGGATCGACCATACTCAGCTACCTATCTTGAGAGAGGCAATTATATTGGGAAATATTCTCGTGATGAGCCCATGTTTGAACCTGAAACTGGATTAGCATCAGATTCTACATCTGAAAATGAAGATGTTAATATTCAGGGCCACAGAGTATTTGATGATTCTTGGACTGCCGAATCAGGAGTAAGAAAGGGAAGCAATTTACGGACTGTGGCATTCAGGGCAGTTGAGAATTCTGATGATGAACGTGTGGCACAATATACACAGAAGGATCAACCTTCGTTAGCTGCAAATTCCTCACGTGACATTGTAAATATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCAAGGGCAAATTCCTGAACTTGCTGGTCAAAAGTTTTTGCAGGAGAGTGAGTTACAGGGTACCAGATCGGCTGTGCAAGTTATGGAGAATGGCGAGCCAGTGACCCTTGTTAACCAACGGAAAACACCAGCATCTAACCTTCAAGAAGAGTTCCAGAAACCTCCTTTATCTGCTAATGGCCAATTTGCTGGCACTCGTCCTTTAGAGGAAGCTGATGCTCGAACCATTTTTGTGAGCAATGTTCACTTTGCTGCAACGAAGGATAGCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTTTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTCAGCTTATGTGGAGTTCATGAGAAAAGAATCTGCAGAGAATGCGTTGTCTCTTGATGGGACCTCGTTTATGTCTAGGATTCTAAAGGTCGTAAGGAAAAATGCTTCACAATTAGAAGGTGCTTCAACTGTTATCTGGCCTCGTGCTGTGCGAGGCTCGCCGTTTCCTACTTCGAGATTTACCAGAGCTCCATTCATGAGGGGTGTCCCTGGTGGATTTAGGGCTCGTCCCCCGATGAAACTCAGGGCCAGGAGCATGCAGTGGAAGCGTGATAATCAGACCACAACTGCTGACAATGGTGCATCTCTCTCTGGTAATTCTATTCCCTCACCTGGTGCTCGTAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGTGGACAAGTAGGAACCACTCGATTGTGAGAAAATTATTTTGCGGAAAGAAAATCACGCAGGTTCTCCCAAAATTTGTTTGTGTTTTGGTGATTCATGATTTTTTGTGCATCAGTGGAGGAGTTTGAGAAAGAAGACTCCAAGTGGGGAAGTTTTAGCAGCAGTTTGTAGGAGGGTTTTTTTTTGTTTTCCTTTTTGTTTCCATTGGGGAATGGAAATTGGTGAGTTTTATAGGTAGGAAGAAACTGATGATGGCGGTTCGGATAAATTCATAATTTTTCTCCCCCTTCCAATTCAGAAATTCTTATTCAGCTTCTAGATTAAAGTTTGTGAATAGAGTAAGAATAGAGACCttt

Coding sequence (CDS)

ATGAACTCGTCGGAGATGGGGAGTGAGGATCGTGTCGATGATCGTACGTTCAAGGTTGATTTTACTGGCGACGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAGAGAAGAAGCACAGAATGAACTTAATGTCTTTTTGGCAGACGATAGTCATTCATTTGTATCTTGGTTGTGGGACCATCTGGCTTCAAGTATGGATTTATATGTGGAGCCGCCTGCTAAAGCTTCTGCCAATGAGGTGCCCACACAAAAGTCTCCAGTAGCAGAACCAGATACAAGAAATAATTCTCACAATCTGGAGTCTGATTCTGAAAGAGGGAAGACTGAAAAATTGTCTAGCAGACGACGTACTAGGGAATGGAGAGGAATTGCTAATGAGGAAACCCGTGTAGTTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCTGGTCATAGGAAAAGGAGCCGGCCTGACGATCATCAAGGCACTGAGAGGGAAGCTGCCTTTCAGGTAAGCATTGCTGCCCCTCGACGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAGGCCCTCTAATGCATCTAAGGAGCCCCATTCAAAACGTCTTCGTTCAGTAGTTTCTGCATCCAATAGTGACACAACTAATCGTCCTAGGAGGCTTCAATCTGTTGCAAAAGTTCCAAATCCAATGGCAACTGTCATCAAGGCTGTGACGGAGGCATCTGAAGATGTGGTCAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTCGTGATATGGATTTAACAGAGTCTAGTGGCCGACCTTCAGAATATGGAGCAACTTTTGTAGAGAACGATGAATATGGGGATATGAATCATTCAGAGGATCGACCATACTCAGCTACCTATCTTGAGAGAGGCAATTATATTGGGAAATATTCTCGTGATGAGCCCATGTTTGAACCTGAAACTGGATTAGCATCAGATTCTACATCTGAAAATGAAGATGTTAATATTCAGGGCCACAGAGTATTTGATGATTCTTGGACTGCCGAATCAGGAGTAAGAAAGGGAAGCAATTTACGGACTGTGGCATTCAGGGCAGTTGAGAATTCTGATGATGAACGTGTGGCACAATATACACAGAAGGATCAACCTTCGTTAGCTGCAAATTCCTCACGTGACATTGTAAATATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCAAGGGCAAATTCCTGAACTTGCTGGTCAAAAGTTTTTGCAGGAGAGTGAGTTACAGGGTACCAGATCGGCTGTGCAAGTTATGGAGAATGGCGAGCCAGTGACCCTTGTTAACCAACGGAAAACACCAGCATCTAACCTTCAAGAAGAGTTCCAGAAACCTCCTTTATCTGCTAATGGCCAATTTGCTGGCACTCGTCCTTTAGAGGAAGCTGATGCTCGAACCATTTTTGTGAGCAATGTTCACTTTGCTGCAACGAAGGATAGCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTTTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTCAGCTTATGTGGAGTTCATGAGAAAAGAATCTGCAGAGAATGCGTTGTCTCTTGATGGGACCTCGTTTATGTCTAGGATTCTAAAGGTCGTAAGGAAAAATGCTTCACAATTAGAAGGTGCTTCAACTGTTATCTGGCCTCGTGCTGTGCGAGGCTCGCCGTTTCCTACTTCGAGATTTACCAGAGCTCCATTCATGAGGGGTGTCCCTGGTGGATTTAGGGCTCGTCCCCCGATGAAACTCAGGGCCAGGAGCATGCAGTGGAAGCGTGATAATCAGACCACAACTGCTGACAATGGTGCATCTCTCTCTGGTAATTCTATTCCCTCACCTGGTGCTCGTAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGTGGACAAGTAG

Protein sequence

MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASNSDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSENEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSSRDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPVDK*

Homology

[Close]

BLAST of Cucsa.195110 vs. Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-18
Identity = 72/207 (34.78%), Postives = 103/207 (49.76%), Query Frame = 1


Query: 446 ELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTPASNLQEEFQK------PPLSAN 505
           EL G + +++ EL+  ++ V+ ME         +       LQ E +K      PP +A 
Sbjct: 98  ELTGDQTIEDPELEAIKARVREME---------EEAEKLKELQNEVEKQMNMSPPPGNAG 157

Query: 506 GQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAY 565
                     EADAR+I+V NV + AT + L  HF+  G V +V I+ D  TG PKG AY
Sbjct: 158 PVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAY 217

Query: 566 VEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVI--WPRAVRGSPFPTSRFT 625
           +EF  KES   +L+LD + F  R +KVV K  ++  G ST    +PRA R     +S  +
Sbjct: 218 IEFCDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA-RYRARASSYSS 277

Query: 626 RAPFMRGVPGGFRARPPMKLRARSMQW 645
           R+ F  G     R R   + RAR+  W
Sbjct: 278 RSRFYSGYTPRPRGR-VYRGRARATSW 292

[Close]

BLAST of Cucsa.195110 vs. Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-18
Identity = 72/207 (34.78%), Postives = 103/207 (49.76%), Query Frame = 1


Query: 446 ELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTPASNLQEEFQK------PPLSAN 505
           EL G + +++ EL+  ++ V+ ME         +       LQ E +K      PP +A 
Sbjct: 97  ELTGDQTIEDPELEAIKARVREME---------EEAEKLKELQNEVEKQMNMSPPPGNAG 156

Query: 506 GQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAY 565
                     EADAR+I+V NV + AT + L  HF+  G V +V I+ D  TG PKG AY
Sbjct: 157 PVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAY 216

Query: 566 VEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVI--WPRAVRGSPFPTSRFT 625
           +EF  KES   +L+LD + F  R +KVV K  ++  G ST    +PRA R     +S  +
Sbjct: 217 IEFSDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA-RYRARASSYSS 276

Query: 626 RAPFMRGVPGGFRARPPMKLRARSMQW 645
           R+ F  G     R R   + RAR+  W
Sbjct: 277 RSRFYSGYTPRPRGR-VYRGRARATSW 291

[Close]

BLAST of Cucsa.195110 vs. Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-17
Identity = 72/207 (34.78%), Postives = 102/207 (49.28%), Query Frame = 1


Query: 446 ELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTPASNLQEEFQK------PPLSAN 505
           EL G + +++ EL+  ++ V+ ME         +       LQ E +K      PP +A 
Sbjct: 98  ELTGDQTIEDPELEAIKARVREME---------EEAEKLKELQNEVEKQMNMSPPPGNAG 157

Query: 506 GQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAY 565
                     EADAR+I+V NV + AT + L  HF+  G V +V I+ D  TG PKG AY
Sbjct: 158 PVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAY 217

Query: 566 VEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVI--WPRAVRGSPFPTSRFT 625
           +EF  KES   +L+LD + F  R +KVV K  ++  G ST    +PRA R     +S  +
Sbjct: 218 IEFSDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA-RYRARASSYSS 277

Query: 626 RAPFMRGVPGGFRARPPMKLRARSMQW 645
           R+ F  G     R R   + RAR   W
Sbjct: 278 RSRFYSGYTPRPRGR-VYRGRARVTSW 292

[Close]

BLAST of Cucsa.195110 vs. Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-17
Identity = 71/224 (31.70%), Postives = 108/224 (48.21%), Query Frame = 1


Query: 436 PHYQDQGQIPELA----GQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTPASNLQEEF 495
           P  Q++ + P L     G   +++ EL+  ++ V+ ME         +       LQ E 
Sbjct: 93  PGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREME---------EEAEKLKELQNEV 152

Query: 496 QK------PPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVII 555
           +K      PP +A           EADAR+I+V NV + AT + L  HF+  G V +V I
Sbjct: 153 EKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTI 212

Query: 556 VTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVI--WP 615
           + D  +G PKG AY+EF  KES   +L+LD + F  R +KV+ K  ++  G ST    +P
Sbjct: 213 LCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR-PGISTTDRGFP 272

Query: 616 RAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKL---RARSMQW 645
           RA   +       +R+ F      GF +RP  ++   RAR+  W
Sbjct: 273 RARYRARTTNYNSSRSRFY----SGFNSRPRGRVYRGRARATSW 302

[Close]

BLAST of Cucsa.195110 vs. Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-17
Identity = 68/217 (31.34%), Postives = 105/217 (48.39%), Query Frame = 1


Query: 439 QDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTPASNLQEEFQK----- 498
           ++ G +    G   +++ EL+  ++ V+ ME         +       LQ E +K     
Sbjct: 100 EESGLVEGDPGDGAIEDPELEAIKARVREME---------EEAEKLKELQNEVEKQMNMS 159

Query: 499 -PPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTG 558
            PP +A           EADAR+I+V NV + AT + L  HF+  G V +V I+ D  +G
Sbjct: 160 PPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG 219

Query: 559 QPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVI--WPRAVRGSP 618
            PKG AY+EF  KES   +L+LD + F  R +KV+ K  ++  G ST    +PRA   + 
Sbjct: 220 HPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR-PGISTTDRGFPRARYRAR 279

Query: 619 FPTSRFTRAPFMRGVPGGFRARPPMKL---RARSMQW 645
                 +R+ F      GF +RP  ++   RAR+  W
Sbjct: 280 TTNYNSSRSRFY----SGFNSRPRGRVYRGRARATSW 302

[Close]

BLAST of Cucsa.195110 vs. TrEMBL
Match: A0A0A0L9I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697930 PE=4 SV=1)

HSP 1 Score: 1356.3 bits (3509), Expect = 0.0e+00
Identity = 684/684 (100.00%), Postives = 684/684 (100.00%), Query Frame = 1


Query: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60
           MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG
Sbjct: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60

Query: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120
           RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT
Sbjct: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120

Query: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180
           RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK
Sbjct: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180

Query: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240
           RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN
Sbjct: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240

Query: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300
           SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG
Sbjct: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300

Query: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360
           RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE
Sbjct: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360

Query: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420
           NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS
Sbjct: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420

Query: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480
           RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR
Sbjct: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480

Query: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540
           KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV
Sbjct: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540

Query: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600
           LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV
Sbjct: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600

Query: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660
           IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS
Sbjct: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660

Query: 661 GNSIPSPGARSLTYVRTEPKPVDK 685
           GNSIPSPGARSLTYVRTEPKPVDK
Sbjct: 661 GNSIPSPGARSLTYVRTEPKPVDK 684

[Close]

BLAST of Cucsa.195110 vs. TrEMBL
Match: F6HBB3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01190 PE=4 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 3.8e-204
Identity = 393/700 (56.14%), Postives = 497/700 (71.00%), Query Frame = 1


Query: 6   MGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65
           M   DR+DDRTF+V+F+GDG A+LRER+K K+KEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 1   MEGADRMDDRTFRVNFSGDGAARLRERVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60

Query: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNSH 125
           A+NELNVFL DDSHSFVSWLWDHL S + LYV P  ++  +E+   K  + E   RN+S 
Sbjct: 61  ARNELNVFLGDDSHSFVSWLWDHLDSHLQLYVLPQ-ESYPDEIAETKHTLGEHTERNDSL 120

Query: 126 NLESDSERGKTEKLSSRRRTREWRGIANE---------------ETRVVPRSEVSRVKHS 185
           +L+S+SERG + + S  R  REW+G+A +               +T      +V   K S
Sbjct: 121 HLDSESERGNSLR-SRSRHNREWKGLARDGAEPPPLRSSEDDHVQTEEKTHRKVGHAKRS 180

Query: 186 SPEQVPGHRKRSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSK 245
              + P  +KR+RPDD +  +RE   Q +I APRRLLQFA+RDAVAT+RPSN + EP  K
Sbjct: 181 LSPKHPNQKKRNRPDDLKQAKREVVSQATINAPRRLLQFAVRDAVATSRPSNLAAEPKLK 240

Query: 246 RLRSVVSASNSDTT--NRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSS-SVFDRLG 305
           RLRSVVS S  D++  +RP+RLQSVA++P+ MAT IKAV EA+EDV++V+SS +VFDRLG
Sbjct: 241 RLRSVVSTSTGDSSLDDRPQRLQSVARMPSAMATAIKAVAEAAEDVIKVRSSGNVFDRLG 300

Query: 306 RQSRDMDLTESSGRPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMF 365
           R  R MDL+E S + + +  T  E+  Y D     ++  S T+L+R  Y   Y+ +  M 
Sbjct: 301 RGPRGMDLSEVSDQQAGFRETGTEDGGYEDFKQIPEKTRS-THLQRSAYSEHYAGNVTML 360

Query: 366 EPETGLASDSTSENE---DVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDE-R 425
           E ETGLASDS S+NE   DVN+ G R+ D S +  +G  KG +   V +   +N+D+  R
Sbjct: 361 ESETGLASDSASDNEGYDDVNLMGRRIMDVSQSGTTGGNKGDDSLMVQYSVAKNADEGMR 420

Query: 426 VAQYTQKDQPSLAANSSRDIVNISVNVNTWKPP-HYQDQGQIPELAGQKFLQESELQGTR 485
             +   + QPS  AN+SR IVNISVNVNTWKPP HYQ   ++ E+ GQK +Q +E    +
Sbjct: 421 TMRSIDQGQPSAVANTSRKIVNISVNVNTWKPPAHYQGPREVEEVDGQKPVQGNETGTGK 480

Query: 486 SAVQVME-NGEPVTLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNV 545
           S V++M+ NG PV++ N    PA + Q E QK   SA G ++  RPLE+AD+RTIFV+NV
Sbjct: 481 SGVRLMKANGNPVSVGNGNAKPAVDTQRESQKMQPSAPGSYSTGRPLEDADSRTIFVNNV 540

Query: 546 HFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMS 605
           HFAATKDSLSRHFNKFGEV+KVIIVTDA TGQPKGSAYVEFMRKE+AE+ALSLDGTSFMS
Sbjct: 541 HFAATKDSLSRHFNKFGEVVKVIIVTDAATGQPKGSAYVEFMRKEAAEHALSLDGTSFMS 600

Query: 606 RILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARS 665
           RILKVV+++++  E A  + WPR  RGSPF  +RF R PF RG+PG FRAR P+KL ARS
Sbjct: 601 RILKVVKRSSTHQEAAPGMSWPRIARGSPFAAARFARVPFQRGIPGAFRARLPVKLGARS 660

Query: 666 MQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKP 682
           +QWKRD Q T A++GA  S NS+PSP ARSLTYVRTEPKP
Sbjct: 661 LQWKRDAQPTLAESGAPASNNSVPSPTARSLTYVRTEPKP 697

[Close]

BLAST of Cucsa.195110 vs. TrEMBL
Match: A0A0B0MI11_GOSAR (Polyadenylate-binding 2-A OS=Gossypium arboreum GN=F383_19189 PE=4 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 2.2e-196
Identity = 386/701 (55.06%), Postives = 488/701 (69.61%), Query Frame = 1


Query: 5   EMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRRE 64
           +MGS DRVDD TFKV+F+GDG AKL++R+K K+KEFMGDYTDDTLVEYVIVLLRNGRR++
Sbjct: 2   KMGSVDRVDDLTFKVNFSGDGAAKLKDRVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKD 61

Query: 65  EAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNS 124
           EA NELNVFL DDS SFVSWLWDHLAS++DLY   P++    +  T+ + +        S
Sbjct: 62  EAMNELNVFLGDDSDSFVSWLWDHLASNLDLYA--PSREPHLDEGTRTTVLGNHSIGAES 121

Query: 125 HNLESDSERGKTEKLSSRRRTREWRGIANEETRVVP-RS--------------EVSRVKH 184
           H L++DSERGK+ K    R  R+W+G+  +     P RS              +VSR + 
Sbjct: 122 HQLDTDSERGKSTKFPRNRHNRDWKGLVRDAAEPPPLRSSEVENIRFEEKSSRKVSRGRS 181

Query: 185 SSPEQVPGHRKRSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHS 244
           +SP   P  +KRSRPDD Q  +REA  Q++I APRRLLQFA+RDAV T+R   ++KEP S
Sbjct: 182 TSPR--PTQKKRSRPDDRQPIKREAVPQMNIDAPRRLLQFAVRDAVGTSRAPISAKEPSS 241

Query: 245 KRLRSVVSASNSDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSS-SVFDRLGR 304
           KRLRSVVS S+ +   RP+R+QSVA+VPNPMATVIKAV EA+EDV +VK++ SVFDRLG 
Sbjct: 242 KRLRSVVSTSSGELPARPKRIQSVARVPNPMATVIKAVAEAAEDVTKVKNAGSVFDRLGP 301

Query: 305 QSRDMDLTESSGRPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFE 364
               MD+ ++     E+  +  E++EYGD+    ++ +SA Y +R  Y G++  +    E
Sbjct: 302 ---GMDVLDTRDLHPEFRESLTEDEEYGDLKQPLEKTHSA-YYQREEYAGRHVGNVTALE 361

Query: 365 PETGLASDSTSENE---DVNIQGHRVFDDSWTAESGV---RKGSNLRTVAFRAVENSDDE 424
            +TGLAS+S S+NE   DV++ GH V D+S T  +G     KG N   V +   +   D+
Sbjct: 362 SQTGLASESLSDNEWYGDVDVVGHGVMDESHTGHTGRSSGNKGDNSLMVQYNVAK---DD 421

Query: 425 RVAQYTQKDQ--PSLAANSSRDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQG 484
            + Q   KDQ   ++  N+SR IVNISVNVNTWKPPHYQ+  ++ EL G+K L ESE   
Sbjct: 422 EILQTRNKDQNQSTIVTNTSRKIVNISVNVNTWKPPHYQEAREVSELDGRKSLPESEAVA 481

Query: 485 TRSAVQVMENGEPVTLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSN 544
            ++  ++MENG PV + N     A+  QE  QK    ++  +A  RPLE+AD+RTIFVSN
Sbjct: 482 NKANHRLMENGNPVNVGNGNVKGAAYNQEPSQKAVQPSSASYAAARPLEDADSRTIFVSN 541

Query: 545 VHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFM 604
           VHFAATKDSLSRHFNKFG+VLKVIIVTDA TGQPKGSAYVEFMRKE+AENALSLDGTSFM
Sbjct: 542 VHFAATKDSLSRHFNKFGDVLKVIIVTDAATGQPKGSAYVEFMRKEAAENALSLDGTSFM 601

Query: 605 SRILKVVRKNASQLEGASTVI-WPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRA 664
           SRILKVV+K+++  E A+ V+ WPR  RGSPF  +RF RA F RG+PG FR   P+K  A
Sbjct: 602 SRILKVVKKSSAPQEAAAPVMTWPRVARGSPFVAARFGRASFARGMPGAFRPHLPIKPGA 661

Query: 665 RSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPK 681
           RS QWKRD QTTT    A ++G +I SP  RSLTYVRTEPK
Sbjct: 662 RSFQWKRDAQTTTTPTDA-ITGTNISSPTFRSLTYVRTEPK 690

[Close]

BLAST of Cucsa.195110 vs. TrEMBL
Match: A0A0D2MT63_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1)

HSP 1 Score: 677.6 bits (1747), Expect = 1.6e-191
Identity = 384/701 (54.78%), Postives = 485/701 (69.19%), Query Frame = 1


Query: 5   EMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRRE 64
           +MGS DRV+D TFKV+F+GDG AKL++R+K K+KEFMGDYTDDTLVEYVIVLLRNGRR+ 
Sbjct: 2   KMGSVDRVNDLTFKVNFSGDGAAKLKDRVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKG 61

Query: 65  EAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNS 124
           EA NELNVFL DDS SFVSWLWDHLAS++DLY   P++    +  T+ + +        S
Sbjct: 62  EAMNELNVFLGDDSESFVSWLWDHLASNLDLYA--PSREPHLDEGTRTTVLGNQSIGAES 121

Query: 125 HNLESDSERGKTEKLSSRRRTREWRGIANEETRVVP-RS--------------EVSRVKH 184
           H L++DSERGK+ K    R  R+W+G+  +     P RS              +VSR + 
Sbjct: 122 HQLDTDSERGKSTKFPRNRHNRDWKGLVRDAAEPPPLRSSEVENIRFEEKSSRKVSRGRS 181

Query: 185 SSPEQVPGHRKRSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHS 244
           +SP+  P  +KRSRPD+ Q  +REA    +I APRRLLQFA+RDAV T+R   ++KEP S
Sbjct: 182 TSPQ--PTQKKRSRPDERQPIKREAV--PNIDAPRRLLQFAVRDAVGTSRAPISAKEPSS 241

Query: 245 KRLRSVVSASNSDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSS-SVFDRLGR 304
           KRLRSVVS S+ D   RPRR+QSVA+VPNPMATVIKAV EA+EDV +VK++ SVFDRLG 
Sbjct: 242 KRLRSVVSTSSGDLPARPRRIQSVARVPNPMATVIKAVAEAAEDVTKVKNAGSVFDRLGP 301

Query: 305 QSRDMDLTESSGRPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFE 364
               MD+ E+     E+  +  E++EYGD+N   ++ +SA Y +R    G++  +    E
Sbjct: 302 ---GMDVLETGDLHPEFRESLTEDEEYGDLNQPLEKTHSA-YYQREECAGRHVGNVTALE 361

Query: 365 PETGLASDSTSENE---DVNIQGHRVFDDSWTAESGV---RKGSNLRTVAFRAVENSDDE 424
            +TGLAS+S S+NE   DV++ GH V D+S T  +G     KG N   V +   +   D+
Sbjct: 362 SQTGLASESLSDNEWYGDVDVVGHGVMDESHTGHAGRSSGNKGDNSLMVQYNVAK---DD 421

Query: 425 RVAQYTQKDQ--PSLAANSSRDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQG 484
            + Q   KDQ   ++A N+SR IVNISVNVNTWKPPHYQ+  +  EL  +K L ESE   
Sbjct: 422 EILQTRNKDQNQSTIATNTSRKIVNISVNVNTWKPPHYQEPREASELDSRKPLPESEAVA 481

Query: 485 TRSAVQVMENGEPVTLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSN 544
            ++  ++MENG PV + N     A+  QE  QK  +  +  +A  RPLE+AD+RTIFVSN
Sbjct: 482 NKANHRLMENGNPVNVGNGNVKGAAYNQELSQKA-VQPSASYAAARPLEDADSRTIFVSN 541

Query: 545 VHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFM 604
           VHFAATKDSLSRHFNKFG+VLKVIIVTDA TGQPKGSAYVEFMRKE+A+NALSLDGTSFM
Sbjct: 542 VHFAATKDSLSRHFNKFGDVLKVIIVTDAATGQPKGSAYVEFMRKEAADNALSLDGTSFM 601

Query: 605 SRILKVVRKNASQLEGASTVI-WPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRA 664
           SRILKVV+K+++  E A+ V+ WPR  RGSPF  +RF RA F RG+PG FR   P+K  A
Sbjct: 602 SRILKVVKKSSAPQEAAAPVMTWPRVARGSPFVAARFGRASFARGMPGAFRPHLPVKPGA 661

Query: 665 RSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPK 681
           RS QWKRD QTTT    A ++G ++ SP  RSLTYVRTEPK
Sbjct: 662 RSFQWKRDAQTTTTRTDA-VTGTTVSSPTFRSLTYVRTEPK 687

[Close]

BLAST of Cucsa.195110 vs. TrEMBL
Match: A0A0D2QYN9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1)

HSP 1 Score: 666.8 bits (1719), Expect = 2.9e-188
Identity = 379/701 (54.07%), Postives = 480/701 (68.47%), Query Frame = 1


Query: 5   EMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRRE 64
           +MGS DRV+D TFKV+F+GDG AKL++R+K K+KEFMGDYTDDTLVEYVIVLLRNGRR+ 
Sbjct: 2   KMGSVDRVNDLTFKVNFSGDGAAKLKDRVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKG 61

Query: 65  EAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNS 124
           EA NELNVFL DDS SFVSWLWDHLAS++DLY   P++    +  T+ + +        S
Sbjct: 62  EAMNELNVFLGDDSESFVSWLWDHLASNLDLYA--PSREPHLDEGTRTTVLGNQSIGAES 121

Query: 125 HNLESDSERGKTEKLSSRRRTREWRGIANEETRVVP---------------RSEVSRVKH 184
           H L++DSERGK+ K    R  R+W+G+  +     P                 +VSR + 
Sbjct: 122 HQLDTDSERGKSTKFPRNRHNRDWKGLVRDAAEPPPLRSSEVENIRFEEKSSRKVSRGRS 181

Query: 185 SSPEQVPGHRKRSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHS 244
           +SP+  P  +KRSRPD+ Q  +REA    +I APRRLLQFA+RDAV T+R   ++KEP S
Sbjct: 182 TSPQ--PTQKKRSRPDERQPIKREAV--PNIDAPRRLLQFAVRDAVGTSRAPISAKEPSS 241

Query: 245 KRLRSVVSASNSDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSS-SVFDRLGR 304
           KRLRSVVS S+ D   RPRR+QSVA+VPNPMATVIKAV EA+EDV +VK++ SVFDRLG 
Sbjct: 242 KRLRSVVSTSSGDLPARPRRIQSVARVPNPMATVIKAVAEAAEDVTKVKNAGSVFDRLG- 301

Query: 305 QSRDMDLTESSGRPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFE 364
               MD+ E+     E+  +  E++EYGD+N   ++ +SA Y +R    G++  +    E
Sbjct: 302 --PGMDVLETGDLHPEFRESLTEDEEYGDLNQPLEKTHSA-YYQREECAGRHVGNVTALE 361

Query: 365 PETGLASDSTSENE---DVNIQGHRVFDDSWTAESG---VRKGSNLRTVAFRAVENSDDE 424
            +TGLAS+S S+NE   DV++ GH V D+S T  +G     KG N   V +   +   D+
Sbjct: 362 SQTGLASESLSDNEWYGDVDVVGHGVMDESHTGHAGRSSGNKGDNSLMVQYNVAK---DD 421

Query: 425 RVAQYTQKD--QPSLAANSSRDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQG 484
            + Q   KD  Q ++A N+SR IVNISVNVNTWKPPHYQ+  +  EL  +K L ESE   
Sbjct: 422 EILQTRNKDQNQSTIATNTSRKIVNISVNVNTWKPPHYQEPREASELDSRKPLPESEAVA 481

Query: 485 TRSAVQVMENGEPVTLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSN 544
            ++  ++MENG PV + N     A+  QE  QK  +  +  +A  RPLE+AD+RTIF   
Sbjct: 482 NKANHRLMENGNPVNVGNGNVKGAAYNQELSQK-AVQPSASYAAARPLEDADSRTIF--- 541

Query: 545 VHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFM 604
           VHFAATKDSLSRHFNKFG+VLKVIIVTDA TGQPKGSAYVEFMRKE+A+NALSLDGTSFM
Sbjct: 542 VHFAATKDSLSRHFNKFGDVLKVIIVTDAATGQPKGSAYVEFMRKEAADNALSLDGTSFM 601

Query: 605 SRILKVVRKNASQLEGASTVI-WPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRA 664
           SRILKVV+K+++  E A+ V+ WPR  RGSPF  +RF RA F RG+PG FR   P+K  A
Sbjct: 602 SRILKVVKKSSAPQEAAAPVMTWPRVARGSPFVAARFGRASFARGMPGAFRPHLPVKPGA 661

Query: 665 RSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPK 681
           RS QWKRD QTTT    A ++G ++ SP  RSLTYVRTEPK
Sbjct: 662 RSFQWKRDAQTTTTRTDA-VTGTTVSSPTFRSLTYVRTEPK 684

[Close]

BLAST of Cucsa.195110 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 455.7 bits (1171), Expect = 5.1e-128
Identity = 297/688 (43.17%), Postives = 399/688 (57.99%), Query Frame = 1


Query: 6   MGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65
           MGS D VDDRTF  DF+ +G+AKL+E +K K+KE+MGDYTDD LVEYVIVLLRNGRR+EE
Sbjct: 1   MGSADLVDDRTFNGDFSVEGVAKLKEMVKDKLKEYMGDYTDDILVEYVIVLLRNGRRKEE 60

Query: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNSH 125
           A NEL +FL DDS SFV+WLWDHLA S+D Y      +S  E  T KS +          
Sbjct: 61  ANNELKIFLGDDSDSFVAWLWDHLAESVDEYF-----SSNVEGTTIKSSLISSHEDKALV 120

Query: 126 NLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSRPD 185
            L+S+ ++G+++K +  RR R+WR            + VS +      +    RKRSR D
Sbjct: 121 PLDSEYDKGRSDKSNGARRGRQWRS---------QPTNVSEIPPLLSSEAQSQRKRSRTD 180

Query: 186 DHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSAS--NSDT 245
           D +  +REA   VS    RRLLQFA+RDA+A +RP+N+S E   KRLRSVVS S  NS  
Sbjct: 181 DSRNEQREAKPDVS----RRLLQFAVRDALAISRPANSSTESSLKRLRSVVSTSTQNSSD 240

Query: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSS-SVFDRL----GRQSRDMDLTES 305
            +  R+++SVA+V NPMATV+KAV EA+ED  + KS  SVFDR+    G ++ D ++   
Sbjct: 241 PDPARKIRSVARVVNPMATVMKAVAEAAEDAKKPKSGRSVFDRISHSTGSETLDQNMVLG 300

Query: 306 SGRPS-EYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDS 365
              P  E    F +  E   + +++    +  Y E  N     +   P F  + G    S
Sbjct: 301 EVSPKDEESRNFSQGQEAVQLQYTQSLANNGVYFE--NMTTNDTGLNPDFSSDRGRLGSS 360

Query: 366 TSENEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAA 425
            + +      G+R+              +N  ++  R V++S   +   Y Q   P +A 
Sbjct: 361 VNVSHPSTYLGNRI--------------NNPNSLQHRLVDDSKRVKGTNY-QNRLPEVA- 420

Query: 426 NSSRDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMEN---GEPV 485
            +     + S N++T K    ++Q +IP++  Q+++ E  L  + +  Q+      G+  
Sbjct: 421 -TKHKTASFSGNIDTGKTVKLEEQRKIPDVGLQRYMDEGRLVSSEATTQLSTQKILGD-- 480

Query: 486 TLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHF 545
           T+ N    PA++++EE      S  G  + TRPLE+A +RTIFV+NVHF ATKDSLSRHF
Sbjct: 481 TIGNGNVKPAASVKEE-STTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHF 540

Query: 546 NKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVR-KNASQ 605
           NKFGEVLK  IVTD  TGQP GSAY+EF RKE+AENALSLDGTSFMSRILK+V+  N   
Sbjct: 541 NKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKIVKGSNGQN 600

Query: 606 LEGASTVIWPRAVRGSPFPTSRFTRAP-FMRGVPGGFRARPPMKLRARSMQWKRDNQTTT 665
            E AS++ W R          RFTRAP + RG  G  R R  ++   RSMQWKRD    +
Sbjct: 601 QEAASSMSWSRG--------GRFTRAPSYFRG--GAVRGRSVVRGGGRSMQWKRD----S 631

Query: 666 ADNGASLSGNSIPSPGARSLTYVRTEPK 681
           AD G   + N++    ARSLTYVR E K
Sbjct: 661 ADTG---NNNNVAPNNARSLTYVRAESK 631

[Close]

BLAST of Cucsa.195110 vs. TAIR10
Match: AT2G24350.1 (AT2G24350.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 105.9 bits (263), Expect = 9.9e-23
Identity = 149/597 (24.96%), Postives = 239/597 (40.03%), Query Frame = 1


Query: 12  VDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREEAQNELN 71
           VD  TF +    +  ++L+  I   +  F  DY+DD L EYV VL+ NG+ + +A  +L 
Sbjct: 5   VDGLTFPMSRVSESASRLKTIISDMLPRFTDDYSDD-LSEYVTVLVCNGKSQRQASEDLE 64

Query: 72  VFLADDSHSFVSWLWDHLA---SSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNSHNLE 131
            FL + S  FV  LW+ L    S  +    P          T           ++     
Sbjct: 65  AFLKEQSWKFVVCLWELLVKYFSQSNSASGPKTDVDFGSNDTLIKQGLSSRKYDDYDCKA 124

Query: 132 SDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSRPDDHQ 191
           +D      E+L S         I + E  V P+ E  ++        P  R R R  ++ 
Sbjct: 125 ADGTNSMNEQLISVTAP-----IDDIEAPVSPKVEKMKMSRQELIDSPCTRARRRKKENW 184

Query: 192 GTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASNSDTTNRPR 251
                     S    R++L+  +    AT +P + +   + K      S +    T + R
Sbjct: 185 N---------SSGYSRKVLRSVI--VSATQQPCDRNPAKYEK------SMNERSRTLKKR 244

Query: 252 RLQSVAKVPNPMATVIKAVTEASEDVVRVKSS----SVFDRLGRQSRDMDLTESSGRPSE 311
                 ++ +  A   +AV+    D    + +    SV+DRLGR S +  L   S   S+
Sbjct: 245 PYSPERELDSRFAPSGRAVSARYHDASLHQETEPHVSVWDRLGRASSECVLDTESRTLSK 304

Query: 312 YGATFVENDEYGDMNHSEDRP-YSATYLERGNYIGK-------YSRDEPMFEPETGLASD 371
           +G    E        H +  P + A Y E+ + I +       Y    P F+ +    S+
Sbjct: 305 FGIQTRETKV-----HQQHGPVFPAAYSEQHSEIFQREVLAVGYRHRVPQFDKDRKPKSE 364

Query: 372 STSENEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQ---- 431
           + +  E      H  ++ S       RK    R     +  + +   V QY Q +Q    
Sbjct: 365 TITSTEP-----HIAYNLS-------RK----RRYGMVSPNSGEFSYVPQYKQAEQDFEK 424

Query: 432 PSLAANSS--RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMEN 491
           PSL ++ S  +DI +   NV                   ++ +QE EL+           
Sbjct: 425 PSLLSHQSTKQDIFSEIKNV-------------------KEKMQELELR----------- 484

Query: 492 GEPVTLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSL 551
                 + Q K       EE +  P S   Q+      + +++R I V+NV++AA K+++
Sbjct: 485 ------IIQSKQLKKQKVEERKPSPQSGESQYQE----DVSESRVIHVTNVYYAAKKEAI 517

Query: 552 SRHF-NKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKV 587
           S  F +K G V  VI+VTD  T  PKG+A+V F  KES   A++L GT F SR +KV
Sbjct: 545 SMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYSRPIKV 517

[Close]

BLAST of Cucsa.195110 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-14
Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 1


Query: 480 RKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGE 539
           R+  A   +E   + P S     AG    EE DAR++FV NV +A T + + +HF   G 
Sbjct: 61  REMQAKVEKEMGAQDPASIAANQAGK---EEVDARSVFVGNVDYACTPEEVQQHFQTCGT 120

Query: 540 VLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGAST 599
           V +V I+TD   GQPKG AYVEF+  E+ + AL L+ +    R LKV++K  + + G   
Sbjct: 121 VHRVTILTD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKR-TNVPGLKQ 180

Query: 600 VIWPRAVRGSPFPTSRFTRAPFMRGV---PGGFRARPPMKLRARSMQWK 646
               R  R +P+   RF R PFM      P G+   P  +   R M ++
Sbjct: 181 F---RGRRFNPYMGYRF-RRPFMSPYMYSPYGYGKAPRFRRPMRYMPYQ 220

[Close]

BLAST of Cucsa.195110 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-12
Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 1


Query: 509 EEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESA 568
           EE D+R+I+V NV +A T + + +HF   G V +V I+TD   GQPKG AYVEF+  E+ 
Sbjct: 136 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAV 195

Query: 569 ENALSLDGTSFMSRILKVVRKNAS-----QLEGASTVIWPRAVRGSPFPTSRFTRAPFMR 627
           +N+L L+ +    R +KV  K  +     Q  G          RG PF   R     FM 
Sbjct: 196 QNSLILNESELHGRQIKVSAKRTNVPGMRQFRG----------RGRPFRPMR----GFMP 243

[Close]

BLAST of Cucsa.195110 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 66.6 bits (161), Expect = 6.7e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 509 EEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESA 568
           EE DAR+++V NV +A T + +  HF   G V +V I+ D   GQPKG AYVEF+  E+ 
Sbjct: 84  EEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAV 143

Query: 569 ENALSLDGTSFMSRILKVVRKNAS 593
           + AL L+ +    R LKV  K  +
Sbjct: 144 QEALQLNESELHGRQLKVSPKRTN 166

[Close]

BLAST of Cucsa.195110 vs. NCBI nr
Match: gi|778682812|ref|XP_011651783.1| (PREDICTED: nucleolin 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 1356.3 bits (3509), Expect = 0.0e+00
Identity = 684/684 (100.00%), Postives = 684/684 (100.00%), Query Frame = 1


Query: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60
           MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG
Sbjct: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60

Query: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120
           RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT
Sbjct: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120

Query: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180
           RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK
Sbjct: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180

Query: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240
           RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN
Sbjct: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240

Query: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300
           SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG
Sbjct: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300

Query: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360
           RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE
Sbjct: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360

Query: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420
           NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS
Sbjct: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420

Query: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480
           RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR
Sbjct: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480

Query: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540
           KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV
Sbjct: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540

Query: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600
           LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV
Sbjct: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600

Query: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660
           IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS
Sbjct: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660

Query: 661 GNSIPSPGARSLTYVRTEPKPVDK 685
           GNSIPSPGARSLTYVRTEPKPVDK
Sbjct: 661 GNSIPSPGARSLTYVRTEPKPVDK 684

[Close]

BLAST of Cucsa.195110 vs. NCBI nr
Match: gi|659123692|ref|XP_008461790.1| (PREDICTED: nuclear localization sequence-binding protein isoform X1 [Cucumis melo])

HSP 1 Score: 1298.5 bits (3359), Expect = 0.0e+00
Identity = 656/684 (95.91%), Postives = 666/684 (97.37%), Query Frame = 1


Query: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60
           M+SSEMGSEDRVDDRTFKVDFTG+GMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG
Sbjct: 1   MDSSEMGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60

Query: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120
           RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAK+SANEVP  KSPVAEPDT
Sbjct: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSANEVPRPKSPVAEPDT 120

Query: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180
           RNNSHNLESDSERGKTEKLSSRRR REWRGIANEETRV+P+SEVSRVKHSSPEQVP HRK
Sbjct: 121 RNNSHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRK 180

Query: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240
           RSRPDD QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNA+KEPHSKRLRSVVSASN
Sbjct: 181 RSRPDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASN 240

Query: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300
           SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG
Sbjct: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300

Query: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360
           R  EYG T VEND+YGDMNHSEDRPYSATYLER NYIGKYSRDEPMFEPETGLASDS SE
Sbjct: 301 RLGEYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASE 360

Query: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420
           NEDVNI+GHRVFDDSWTAESGVRKGSNLRTVAFRAV+NSDDERVAQYTQKDQPSLAANSS
Sbjct: 361 NEDVNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSS 420

Query: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480
           RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQV ENGEPVTLVNQR
Sbjct: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVTENGEPVTLVNQR 480

Query: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540
           KTPASNLQ+EFQKPPLSANGQFA TRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV
Sbjct: 481 KTPASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540

Query: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600
           LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV
Sbjct: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600

Query: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660
            WPRAVRGSPFPTSRFTR PFMRGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLS
Sbjct: 601 TWPRAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLS 660

Query: 661 GNSIPSPGARSLTYVRTEPKPVDK 685
           GNSIPSPGARSLTYVRTEPKP DK
Sbjct: 661 GNSIPSPGARSLTYVRTEPKPADK 683

[Close]

BLAST of Cucsa.195110 vs. NCBI nr
Match: gi|778682815|ref|XP_011651784.1| (PREDICTED: nucleolin 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 1281.5 bits (3315), Expect = 0.0e+00
Identity = 656/684 (95.91%), Postives = 656/684 (95.91%), Query Frame = 1


Query: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60
           MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG
Sbjct: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60

Query: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120
           RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT
Sbjct: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120

Query: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180
           RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK
Sbjct: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180

Query: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240
           RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN
Sbjct: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240

Query: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300
           SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG
Sbjct: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300

Query: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360
           RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE
Sbjct: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360

Query: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420
           NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS
Sbjct: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420

Query: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480
           RDI                            FLQESELQGTRSAVQVMENGEPVTLVNQR
Sbjct: 421 RDI----------------------------FLQESELQGTRSAVQVMENGEPVTLVNQR 480

Query: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540
           KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV
Sbjct: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540

Query: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600
           LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV
Sbjct: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600

Query: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660
           IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS
Sbjct: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 656

Query: 661 GNSIPSPGARSLTYVRTEPKPVDK 685
           GNSIPSPGARSLTYVRTEPKPVDK
Sbjct: 661 GNSIPSPGARSLTYVRTEPKPVDK 656

[Close]

BLAST of Cucsa.195110 vs. NCBI nr
Match: gi|778682818|ref|XP_011651785.1| (PREDICTED: nucleolin 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 1274.6 bits (3297), Expect = 0.0e+00
Identity = 653/684 (95.47%), Postives = 653/684 (95.47%), Query Frame = 1


Query: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60
           MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG
Sbjct: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60

Query: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120
           RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT
Sbjct: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120

Query: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180
           RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK
Sbjct: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180

Query: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240
           RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN
Sbjct: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240

Query: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300
           SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG
Sbjct: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300

Query: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360
           RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE
Sbjct: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360

Query: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420
           NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS
Sbjct: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420

Query: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480
           RDI                               ESELQGTRSAVQVMENGEPVTLVNQR
Sbjct: 421 RDI-------------------------------ESELQGTRSAVQVMENGEPVTLVNQR 480

Query: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540
           KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV
Sbjct: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540

Query: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600
           LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV
Sbjct: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600

Query: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660
           IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS
Sbjct: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 653

Query: 661 GNSIPSPGARSLTYVRTEPKPVDK 685
           GNSIPSPGARSLTYVRTEPKPVDK
Sbjct: 661 GNSIPSPGARSLTYVRTEPKPVDK 653

[Close]

BLAST of Cucsa.195110 vs. NCBI nr
Match: gi|659123694|ref|XP_008461791.1| (PREDICTED: nuclear localization sequence-binding protein isoform X2 [Cucumis melo])

HSP 1 Score: 1223.8 bits (3165), Expect = 0.0e+00
Identity = 628/684 (91.81%), Postives = 638/684 (93.27%), Query Frame = 1


Query: 1   MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60
           M+SSEMGSEDRVDDRTFKVDFTG+GMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG
Sbjct: 1   MDSSEMGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNG 60

Query: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDT 120
           RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAK+SANEVP  KSPVAEPDT
Sbjct: 61  RRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSANEVPRPKSPVAEPDT 120

Query: 121 RNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRK 180
           RNNSHNLESDSERGKTEKLSSRRR REWRGIANEETRV+P+SEVSRVKHSSPEQVP HRK
Sbjct: 121 RNNSHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRK 180

Query: 181 RSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASN 240
           RSRPDD QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNA+KEPHSKRLRSVVSASN
Sbjct: 181 RSRPDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASN 240

Query: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300
           SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG
Sbjct: 241 SDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSG 300

Query: 301 RPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSE 360
           R  EYG T VEND+YGDMNHSEDRPYSATYLER NYIGKYSRDEPMFEPETGLASDS SE
Sbjct: 301 RLGEYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASE 360

Query: 361 NEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSS 420
           NEDVNI+GHRVFDDSWTAESGVRKGSNLRTVAFRAV+NSDDERVAQYTQKDQPSLAANSS
Sbjct: 361 NEDVNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSS 420

Query: 421 RDIVNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQR 480
           RDI                            FLQESELQGTRSAVQV ENGEPVTLVNQR
Sbjct: 421 RDI----------------------------FLQESELQGTRSAVQVTENGEPVTLVNQR 480

Query: 481 KTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540
           KTPASNLQ+EFQKPPLSANGQFA TRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV
Sbjct: 481 KTPASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEV 540

Query: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600
           LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV
Sbjct: 541 LKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV 600

Query: 601 IWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLS 660
            WPRAVRGSPFPTSRFTR PFMRGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLS
Sbjct: 601 TWPRAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLS 655

Query: 661 GNSIPSPGARSLTYVRTEPKPVDK 685
           GNSIPSPGARSLTYVRTEPKP DK
Sbjct: 661 GNSIPSPGARSLTYVRTEPKPADK 655

The following BLAST results are available for this feature:

BLAST of Cucsa.195110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAB2A_XENLA	4.1e-18	34.78	Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1	[more]
PAB2B_XENLA	4.1e-18	34.78	Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b PE=2 SV=1	[more]
PABP2_XENTR	1.2e-17	34.78	Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1	[more]
PABP2_HUMAN	4.5e-17	31.70	Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3	[more]
PABP2_BOVIN	4.5e-17	31.34	Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3	[more]

BLAST of Cucsa.195110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9I7_CUCSA	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697930 PE=4 SV=1	[more]
F6HBB3_VITVI	3.8e-204	56.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01190 PE=4 SV=...	[more]
A0A0B0MI11_GOSAR	2.2e-196	55.06	Polyadenylate-binding 2-A OS=Gossypium arboreum GN=F383_19189 PE=4 SV=1	[more]
A0A0D2MT63_GOSRA	1.6e-191	54.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1	[more]
A0A0D2QYN9_GOSRA	2.9e-188	54.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1	[more]

BLAST of Cucsa.195110 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12640.1	5.1e-128	43.17	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G24350.1	9.9e-23	24.96	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	2.9e-14	35.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	1.2e-12	39.02	polyadenylate-binding protein 1	[more]
AT5G10350.1	6.7e-11	42.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.195110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682812\|ref\|XP_011651783.1\|	0.0e+00	100.00	PREDICTED: nucleolin 1 isoform X1 [Cucumis sativus]	[more]
gi\|659123692\|ref\|XP_008461790.1\|	0.0e+00	95.91	PREDICTED: nuclear localization sequence-binding protein isoform X1 [Cucumis mel...	[more]
gi\|778682815\|ref\|XP_011651784.1\|	0.0e+00	95.91	PREDICTED: nucleolin 1 isoform X2 [Cucumis sativus]	[more]
gi\|778682818\|ref\|XP_011651785.1\|	0.0e+00	95.47	PREDICTED: nucleolin 1 isoform X3 [Cucumis sativus]	[more]
gi\|659123694\|ref\|XP_008461791.1\|	0.0e+00	91.81	PREDICTED: nuclear localization sequence-binding protein isoform X2 [Cucumis mel...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR002483	PWI_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR002483	PWI_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.195110.1	Cucsa.195110.1	mRNA
Cucsa.195110.2	Cucsa.195110.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 516..556 score: 5.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 514..556 score: 10
IPR002483	PWI domain	GENE3D	G3DSA:1.20.1390.10		coord: 18..93 score: 3.
IPR002483	PWI domain	PFAM	PF01480	PWI	coord: 29..92 score: 5.
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 513..556 score: 7.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 505..556 score: 4.48
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 513..556 score: 2.3E-31coord: 31..53 score: 2.3E-31coord: 73..80 score: 2.3
None	No IPR available	PANTHER	PTHR24012:SF369	SUBFAMILY NOT NAMED	coord: 73..80 score: 2.3E-31coord: 513..556 score: 2.3E-31coord: 31..53 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.195110	Cla017260	Watermelon (97103) v1	cgywmB376
Cucsa.195110	Csa3G697930	Cucumber (Chinese Long) v2	cgycuB297
Cucsa.195110	MELO3C023966	Melon (DHL92) v3.5.1	cgymeB354
Cucsa.195110	ClCG10G012470	Watermelon (Charleston Gray)	cgywcgB354
Cucsa.195110	CSPI03G29760	Wild cucumber (PI 183967)	cgycpiB306
Cucsa.195110	CmaCh14G010130	Cucurbita maxima (Rimu)	cgycmaB0567
Cucsa.195110	CmaCh01G002220	Cucurbita maxima (Rimu)	cgycmaB0569
Cucsa.195110	CmoCh14G010290	Cucurbita moschata (Rifu)	cgycmoB0569
Cucsa.195110	CmoCh01G002330	Cucurbita moschata (Rifu)	cgycmoB0571
Cucsa.195110	Lsi03G012120	Bottle gourd (USVL1VR-Ls)	cgylsiB331
Cucsa.195110	Cp4.1LG02g15430	Cucurbita pepo (Zucchini)	cgycpeB0549
Cucsa.195110	Cp4.1LG03g04410	Cucurbita pepo (Zucchini)	cgycpeB0550
Cucsa.195110	MELO3C023966.2	Melon (DHL92) v3.6.1	cgymedB349
Cucsa.195110	CsaV3_3G032240	Cucumber (Chinese Long) v3	cgycucB310
Cucsa.195110	Cla97C10G195260	Watermelon (97103) v2	cgywmbB359
Cucsa.195110	Bhi11G001189	Wax gourd	cgywgoB401
Cucsa.195110	Carg07319	Silver-seed gourd	carcgyB0862
Cucsa.195110	Carg11227	Silver-seed gourd	carcgyB0931

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.195110	Melon (DHL92) v3.6.1	cgymedB348
Cucsa.195110	Cucumber (Chinese Long) v3	cgycucB311
Cucsa.195110	Wax gourd	cgywgoB402
Cucsa.195110	Cucurbita maxima (Rimu)	cgycmaB0568
Cucsa.195110	Cucurbita moschata (Rifu)	cgycmoB0570
Cucsa.195110	Wild cucumber (PI 183967)	cgycpiB307
Cucsa.195110	Melon (DHL92) v3.5.1	cgymeB353
Cucsa.195110	Cucurbita pepo (Zucchini)	cgycpeB0548
Cucsa.195110	Bottle gourd (USVL1VR-Ls)	cgylsiB330