Cp4.1LG03g04410 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g04410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA binding family protein, putative
Location	Cp4.1LG03 : 5522510 .. 5532406 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCTATTTTTCTATTTTTTTTCATTTTTCCATTTTTGTTCTGTTCATCTCAAATCTCTCTCCCTCAGCCATGTTCTCTGATGAAATCCTCTCTCCGTTGCGTTTCTGCGTTTAATTTCCAGCGGCTTCCTTGTTAATCGGTTTTCTCTGTCCAGTTTTCACAGGATCGGTGGAACCGGCTAGGGTTCATGGAAGTTGCAATTCGGGAGTTTAATATTTGAGGGTTTGAATATCAATTGAACTCCGGTGTTAGTGTTATTAAAATTAAGCGTTCGGTGTTCTCGATTGTGAAGCTTGGTGATAGAACGCATCCGAGATGGGTAGTGAGGATCGTGTCGATGATCGGACGTTCAAGGTTGATTTCAGTGGCGAGGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGTACGGACTACCCTGGCCTTTTAACATTCATGTGCCTGGTTTTTGCGAAGCAATGTCATTGTCGGTTTTGTGACGAGTCTGCCTGGGAGTTTTAGAAATTCTTTTAGGTTATTCATGTGGAGGCCATTTTCTTCTTCTTGACTGGTCGTTGAGGAATTTGTTTGGTTGAAGAAATGGAAATGTAGGATTCGCGGGTTCTTATATATTTGTAGAGGCAAGAAATTGAGATTGAGCTAATTGGACGAAAATGTTTTGTAATCTTTGCATTAGATTTCTTTGAGGGATTTATTGAGAATATCATTCTGAAAAAAAGATATTGGAATACTCATAATATCTTCCTTGAGGGTGTTTCAAGAGTTCTAAAAGGATTTAGTAGTGGTGAATCCATCAGGTTTTTGAGCTTTCTTACTTCCCAAATGTGAAATAGCTTAAATAATTTTGTCTACTCGAAATTTAGCCTCGATCTAAAGCAATCCTTGGGTGTCTCTAAGGTTGAGAGCCGACCCAAACTGTTTGATATAAATTTTGCCACCTGTTATTTGAGTATGGATCTTGGATAAAGCAAGAAACGCCTTTTCAATATGTGTGGAAAGAGCTAGTGTTATAATATTCTTCTCTTCTCGACATGTCTCCTGCGAGCTGTGTGGATTGTATCTTCATGTCCAAACAAATCTCTTTCCAAAATAGATCATTGAGTTGGGATTCGAGATTAATTTGAGAAGACCGTTTGCTTCAAGCAGGGAAAAGTTTTGCAAGTGGTCTAGAGCTTTGGGATCATCAAGAATTTCAGCTTTTCTGAAGGTTCCATCTTTTCAGCAAGCTTTTCGTTTTTTTAAATTTGCAAATCAGACCATACCTTAGCCAACCTTCAAGATTAGAGCAGTGTTCCACCAACTTTTGTAAGTCTCTGGGAAATTGCTGTGCTTGAGCCTCATATTTATGAATTTAAAAAGGGCAGGATCCCGTTTGATACCAGAAGATTTCTTGAAGGGTCATTTAGCGGTTGGAGGTAGGCATTTCAAGGTGTTTTAATTCTTCGGAGATTTAAGAGTAACCAATCATGGGAGACTAAAATCTATCAATGAGGGACCAATCAGTCCATCTTGGATCAAGTTAACTTGGCTCTGTTATGAGGGAGGGACATCAATGAAGGAGAGGTTGTCAACAACCTCGTCAAAGAGCTTCATTCTTTTCGCAGTGAATTTCTCCCAGCTTCATTAAAAGGTATTGANGGAGGTTGTCAACAACCTCGTCAAAGAGCTTCATGCTTTTCGCAGTGAATTTCTCCCAGCTTCATTAAAAGGTATTGAAGCATCTTCCTTCTCGACTACTNTCCTTCTCAACTACTCAATTAGCCATAACAGAGGCACCCAAGATTTTCCAATTTCCTAAAATTGAAACCTGGATATAGACATCTGGAGAGGGGCCATAAATATTTAAAGCCTGAGAAGAAGAAAATTAGCAGAAGAGAAATTGAACCTTTAAGAGAAAGGTTGCAGCCATAACAAAGGCGCCCAAGATTGTCCAATTCCCTCCAAAAAAAAAAAAAAAAAAAAAAATCTTGAGATGGACATCTTGAGAGGGTCCATAGATACTGAAAATTTGAAGAAGAAAAAGAAGTCCAACAAACATCTATGAGGTCTAGTTAGATTTGATAATTTTTTGGTTTGTACAAGGAAGCTATTAAAGATTCAAGGTTTCAACTCTTAAGCTTCGCATGGAGGGGACCACAAGTGATGTAAAGGCGGGTAATACAATTGTTTCATCATAGGAGTGACTAGGACATGATTCTTTGGGGCCTAAGGAATGGGTATTTTGTTATTGTTTGGTTATTTCTGTTTGGGGTTTGCTTTATTAACTGTTGTTAGCTGTGGGGAAAGCCATATTTCTCTTGAAACTCCCTTGGCTTGGCCAAAATAGTTAANGTTAAAGAGTCAAGGTTTCAACTCTTAAGCTTCGCATGGAGGGGACCACAAGTGATGTAAAGGCGGGTAATATAATTGTTTAATCATAGGAGTGACTAGGACATGATTCTTTGGGGCCGAAGGAATGGGTATTTTGTTATTGTTCGGTTATTTCTGTTTGGGGTTTGCTTTATCAACTGTTGTTAGCTGTGGGGAAAGTCATATTTCTCTTGAAACTCCCTTGGCTTGGCCAAAATAGTTAATTCATAATTCAAGATCCATCAGTATCAGTGTATCATATAAAGGGGCAACTTGAATAACACTTGGATCACAGCGAGATTTGATATAACTTCTATGACAGCCATGAGAACCAATTTTTGAAGTTTTAGTGGTAGAATTGGGAAATCCTCCNAGATCACTGTGAGATTTGATATAACTTCTACGATAGCCATGAGAACCAATTTTTGAAGTTTTAGTGGTAGAATTGAGAAATCCTCCACATATTTAAAATGCCTACAGAGGAATCAAGACAACATTTGTTGAGGGGCACATTTATAATCTTTATCCATCCTTCATATGAACCAGATGACTAAATTCTTAGAATGCTTGAGTCCAATTTTCTTAGGCAAACAAGTCTAGCTTGGTTAATCCTTNATTCTTAGAATGCTTGAGTCCAATTTTCTTAGGCAAACAAGTCTAGCTTGGTCAATCCTTGAGGATGGCTCTATTACTTATACATGGTTGGGGCTAATTAGCTNTAATCCTTATGCACCCGAGGATGGCTCTATTACTTATACATGGTTGGGGCTAATTAGCTCTTGGAGAGCCCCGGTTGTTCTTTAAGGGTTTCTTCAAACCACACTAGAGGCATTCATCTTGATAAGAAGATGTCCTCTTTAAGTAAGCATTAACCATGTTTTAGTAATCTTGCTATTTTTTTTACCTTTCTATCATCTCAATGCTATTCTTTCTTTACNGAAGAAGATGTCCTCTTTAAGAAAGCATTAACTGTTTTAGTAATCTTGCTATTTTTTTTTACCTTTCTATCATCTCAATGCTATTCTTTCTTTACATTCTTTTGAAGATTACCTTTCCATGTGAACTCATTCTTCCAATTTCCATGGGTTGGAAGAGCAAAATCTTGAAGAATGCCAAATTTTATGTGTGGCAGATCCTCGTTAGCAGGGTTAATACATTGGATTGTGTTCTTAGGTTCGTGTCTAAGGTGATCAGACCCTAGTCTTGCATTCTTTGTAGGCGAGTAGCCGAGGATCTAGATCATCTCATGTGGTCATGTCAGTTTGCTAGATCGGTGTAGAGCAACCTTTTTGAGTCCTCCTTCTGGTTGGTTTGGTCAAGAATTTCTAGTTCCATGCTCAAGGAGTTGCTTTCCCTTCCTCTTTTCATGACAATGGTCGTTTGTTGTGGTTAGCATGTCTTAGTGGTATTGTTTTGGGAATTTGGAAAGGAAGGAACGACAAGATTTTTAGTGGAGTGGAGCAATATATGGGTGAGGTGTGGTCCCTTGTTTGATTTCATACCTCGCTTTGGGTCTCTATTAGATTACCAATCAACCCAAAAGCTTAAGCTTATGGGTTTTGGTCAATTTAATGATATCAGCTCTCCAACACTCCCCCTACTTGTGAGTGCCTAGCAAGTGAAGATCAGTAGTAATTAGGAAGAAAGCGACATTATAAGGGTTTGAACACAAGACCTCTTGCTCTAATACCATGTCTGATAACCAATTAACCAAAGGGCTTGTAAATTTAATTATATTAACACTAAGTTTATGTTCGTAAAGACTTGTGTAATTATTCCTTAGGTCTCATTTTGTTTTTAGTGTAGCTGGGCTTTCTTTGAGTTTTTTTTAAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATAACATATAGATATTAACTAGTTTATAAAGCTGAATGCTTGAAAATTTATCTTGAGATGTTGGCATTTTTTTAAGTGATGTGGTATCGCTTAGCCTTTGAATATCCATTTTTTCTCAGGTATTGCTGCATGAGATTGTGATAACTCTCTTTACTGCATTTTAAATTTAATTAAACGTTATACTTGTGCATTTTTCATATGCATGTTTGTCTGTTGCTCAAATTGCATCCATGTTTCATTTTTTTTATACACATCATAATGTGGTAAAGAAGTATGGTATTTAGAACGTCTGTTTGAAGAATCAAGTTGTATTAAATGTAATGAATGTTCTTTGGGTAGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAAAGAAGAAGCACAGAATGAACTTAATGTATTTTTGGCAGATGAGAGCCGTTCTTTTGTATCTTGGTAATTTGATTCTCATCACTCCTCTTGTTCATATTTGTAATTTGGGTTGTAACTCGTGTCGAGTCATTCTTGTAGCTAGTTGATTTAACAGTTCTATAAGCTTCATTTCAACAGGCTGTGGGATCATCTGGCTTCATGTTTGGATTTATACGTGGAGCCGCCTACTAAATCTTCTGCCAATGACAATGAGGTGCCCAGACCAAAGTCTCCGGTAGAAGAACCAGATATAAGAAATAATTCTAACAATCTGGAGTCTGATTCAGAAAGAGGGAAGTCGGAACAATTATCTAGCAGACAGCATAATAGGGAATGGAAAGGAATTGCTAATGATGAAACCCGTGTTGCTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCCAGTCACAGGAAAAGGAGCCGAGATGATGATCATCAAGGCACTGAGGTTCGTGGTCTGACTTTTCTCTTCTGATTTTTTACCTAGAAGCAGGTAACTGGGTTTTAAAATGTGAAATTTGATTTATTTATTTATTTTTTTTTTATTTTTTGAAAACGTGAAACTTGAATTAGTGAAAAGCAATGGGCAAATGGTTCGTTGAACAATATCTTGTTATTTCACAGTTTGCAATGTAATAGATTTGCAATTTTAGGAACCCACAAATTTTTGTTTTAAACTGTATGTTTTTATGTATTAAATTTTTTGAAGTTTCTTAACTTTAAAGAAGTCCTCAATTATGGTGCCTAAGACCTATTAACCCTTATGTACGTGTTTTGTTTTTCTGACTGTGTGTGAACTCTAATTTCTTCTTCTTGCCCTGTTGATATGCTATGTTTAAATTCTGGTTCTTTTTGATGTAATACATAACTATATTCAATTTTGACATTATTTGTTGGGAAAGTAATGATCAGAACTGTAGTTTAGTCTAATTCATATGAATGGATAAACCAGAAACATGAAATATTATGCTATAATTTTGCTCAATATTAGAAAACAAACAGTGTGAGGCAAACGAGTAGTGGGAAAGATGGCATGGATGCTTGTCACTGGAAGGGCACTCCATACTTTAGTTTCAATTGGAAAGTTTTTTGAATTTTTTGTAATGCACCTTTTAGTGCTCTGAGAGTTTTCTTCCTCCCTCCATTTCACTATCAATGAATTTGTTTCCCTTTCTAAAAAAGTATTCTTGATTTGTTTTTGTGACTTTTTTCTGCAATAGTTTGAATGCTCTACTAAACTACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTAAAGTTTCTTAACTTTAAAGAAGTCCTCAATTATGGTGCCTAAGACCTATTAACCCTTATGTACGTGTTTTGTTTTTCTGACTGTGTGTGAACTCTAATTTCTTCTTCTTGCCCTGTTGATATGCTATGTTTAAATTCTGGTTCTTTTTGATGTAATACATAACTATATTCAATTTTGACATTATTTGTTGGGAAAGTAATGATCAGAACTGTAGTTTAGTCTAATTCATATGAATGGATAAACCAGAAACATGAAATATTTTGCTATAATTTTGCTCAATATTAGAAAACAAACAGTGTGAGGCAAACGAGTAGTGGGCAAGATGGCATGGATTCNGTAGTTTAGTCTAATTCATATGAATGGATAAACCAGAAACATGAAATATTATGCTATAATTTTGCTCAATATTAGAAAACAAACAGTGTGAGGCAAACGAGTAGTGGGAAAGATGGCATGGATGCTTGTCACTGGAAGGGCACTCCATACTTTAGTTTCAATTGGAAAGTTTTTTGAATTTTTTGTAATGCACCTTTTAGTGCTCTGAGAGTTTTCTTCCTCCCTCCATTTCACTATCAATGAATTTGTTTCCCTTTCTAAAAAAGTATTCTTGATTTGTTTTTGTGACTTTTTTCTGCAATAGTTTGAATGCTCTACTAAACTACCCCAGTTTTGATATTTTTAGTAATTGGAAATAGCNGACTTTTTTCTGCAATAGTTTGAATGCTCTACTAAACTACCCAGTTTTGATATTTTTAGTAATTGAAGATAACTCGGTCCAGAATATTGGATTGTTTATTGATGCATTATTCTAATTGGAAATGAATTATGTTTTGTGTTTTACAGAGGGAGGCAGCCTTTCAGGTAAGCATTGCTGCCCCTCGGCGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAAGCCCTCTAATGAAGATAAGGAGACCCTTCCAAAGCGTCTTCGTTCGGTTGTTTCTGTATCCAATAGTGACACAACTAATCGTCCCAGGCGGCTTCAATCTGTTGCGAAAGTGCCAAATCCTATGGCAACTGTTATTAAGGCTGTGACTGAGGCAGCTGAAGATGTGATAAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTTGTGATATGGATTTAACAGAGTCCAGTGGCCAAATTGCAGAATATGGAGTAACTGTAGGGGATGATAAATATGGGGAACTCAATCGTACACAGGATCGACCATACTCAGCCACCTATCTCGGGAGAAGCAATTATAGTGGGAAATATGCTCCCAATGAGGGCATGTTTGAACCTGAAACTCGATTAGCATCAGATTCTATATCTGAAAATGAAGATGTTAATATTCAGGGTCACAGAGTACTTGATGATTCTTGGACTGCAGAATCAGGAGTGAGAAAGGGAGGCAATTTGCGAACTGTGCCATTCAGGGATGTCGAGAACTCTGAAGATGAACGCATGACACAATACAAACAGAAGGATCAACCTTCCTTAGTTACAAATTCCTCACGTGACATTGTAAACATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCCTGGGCAGATTCCTGAACTTGGTGGTCAAAAGTTTTTGCAGGAGGGTGAGTTACAAGGTACCGGATCTGCTGTGCAAGTTACGGAGAATGGTGAGCCAGTTAATATTGTTAACCAACAGAAAAGGCCTGCAGCAAACCTTCAAAAAGAGTTCCAGAAGCCTCCTGTATCTGCTAATGGTGGGCTCTCTTTTCTGGTTGCTTGCTCTACAATTTAAATGATAATTAGTTTGTACAATTATCTCTTTTTCTTTTATTTATGAAGTTTCTCATTCTATCTTTTCCCTGTATTTGATTATCGACTATCCATTATCATTCTGGGCTCGTACTTCATTATTCTTTAGTTGGTTTTTCATTCTAAATAATTTGCTTATGTTACCTTATGCAGGCCAATTTGCTGCCTCTCGTCCTCTNCATTCTGGGCTCGTACTTCATTATTCTTTAGTTGGTTTTTCATTCTAATAATTTGCCTATGTTACCTTATGCAGGCCAATTTGCTGCCTCTCGTCCTGTAGAGGATGCTGATGCTCGAACCATTTTTGTTAGCAATGTAATACGTCACTCATATGTTGCTTTTGTGAAGAACTGGGGACTGTTCATCACCTTACATTAATTTTCACGTACAGGTTCACTTTGCTGCTACAAAGGATACCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTGTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTAAGGCATTACAGTTCTTTATTGTTCCCCTGCTACCTCTTTTTGTTACATTGCTTTTTAACAAATTGAGTGATGCGAGTGGAGCAGGTCCGCTTATGTAGAGTTCATGAGAAAAGAATCTGCAGAGAACGCGTTGTCTCTTGACGGGACCTCGTTTATGTCTAGGATTCTCAAGGTACATGTCGTATTTCTAACATTTTTTTTCTGTAGTATGAATCATCACCCATAGAAAGAAAAAGCGTTCGCGAACTCCCCCCTATGTGCTTAGTTTCGGTAGTTGTGTTGGTCAGTTCACAACCTCTACTGTTGTGGGCCGGTGGTATTTTTTTATTTTCTTTCTTAACTGGGTTGTTATTCAAGTATATGGTTGCTTTTTACATAATCAGTGATTTTTGCTGGTGTTTTCATGCCTAACTAAACAGAGAGCGAAAGTTAAATAAAGTTTCTGAAACGACTGAAATGGAAATGGTAGTAGACATCTAGAGGCAAACATTAAAAATGTACAGGATCCTTTCAGTCTTGGGCGTTATTTGTGCCCACTTTTTCTTTTTCTTTCATTGATTTTAACGAAAGTTTGCTTTCTCATAAAGAAAAATGTTCAAGAATCGTAGTTGCGTTAGGTTGATTTGTTCTTTCAATGGTATTTTAACATAACTTTTTCATCATGATGTGAAAACCATGAATTGATTGGAACCCACAGTTTGTTGAGGTATCTGCTGCATAATGTCGTCAACGAATAAAGCTGCATGTTTGGTTGATTTTTCATTGCAGGTCGTAAGGAAAAATAGTTCACAATTAGAAGGTGCTTCAATTGTTACCAGGCCTCGTGCTGTGCGTGGCTCGCCATTTCCTACTCCTAGATTTACCAGAGGTCCATTCCTGAGGGGCGTTCCTGGTGGACTTAGGGCTCGTCCCCCACTAAAACTTGGTGCCAGGAGCATGCAGTGGAAGCGAGATAGTCAGACCACAACTGCTGACAATGGTGCTTCTCTCTCTGGTAATTCTGTACTCTCATCTGGTGCTCGAAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGCGGACAAGTAGGGGAACCACCACTCGATTGATAGAGTTGTTATCTCCTCAAGAAACTGTTCTCAAAATTATTTTGCGGAAAGAGAATCACGCAGATCAAGTATGACCTCCCCAAATTTGGTTTTGTTTTTTGTTTTGGTGGTTCATGATTCTTCGTGCATCATGGTGGAGGAAGCTGAGAAAGCAGAGACCAAGGGAAGTTCTAGCAGTTTCTAGGAGAAATATTTTTTTTGTTTCCATTGGGGAATGGAAATTGGTGAGTTTATAGCTAGGAAACTCATGATGGCGGTTCAGATGATTTCACAATTTTGAGCTCCCACCGAATTCTTATTCAGCTACTAGATTAAATTTGTGAATAGAGTAAGAGTAGACTGNTTTTTGTTGTTCAACTGATATTATGATATTTTGTAATTTTTAATACTGATGTGAAAAAAGGAAAAGAAAAATA

mRNA sequence

ATTTTTCTATTTTTCTATTTTTTTTCATTTTTCCATTTTTGTTCTGTTCATCTCAAATCTCTCTCCCTCAGCCATGTTCTCTGATGAAATCCTCTCTCCGTTGCGTTTCTGCGTTTAATTTCCAGCGGCTTCCTTGTTAATCGGTTTTCTCTGTCCAGTTTTCACAGGATCGGTGGAACCGGCTAGGGTTCATGGAAGTTGCAATTCGGGAGTTTAATATTTGAGGGTTTGAATATCAATTGAACTCCGGTGTTAGTGTTATTAAAATTAAGCGTTCGGTGTTCTCGATTGTGAAGCTTGGTGATAGAACGCATCCGAGATGGGTAGTGAGGATCGTGTCGATGATCGGACGTTCAAGGTTGATTTCAGTGGCGAGGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAAAGAAGAAGCACAGAATGAACTTAATGTATTTTTGGCAGATGAGAGCCGTTCTTTTGTATCTTGGCTGTGGGATCATCTGGCTTCATGTTTGGATTTATACGTGGAGCCGCCTACTAAATCTTCTGCCAATGACAATGAGGTGCCCAGACCAAAGTCTCCGGTAGAAGAACCAGATATAAGAAATAATTCTAACAATCTGGAGTCTGATTCAGAAAGAGGGAAGTCGGAACAATTATCTAGCAGACAGCATAATAGGGAATGGAAAGGAATTGCTAATGATGAAACCCGTGTTGCTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCCAGTCACAGGAAAAGGAGCCGAGATGATGATCATCAAGGCACTGAGAGGGAGGCAGCCTTTCAGGTAAGCATTGCTGCCCCTCGGCGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAAGCCCTCTAATGAAGATAAGGAGACCCTTCCAAAGCGTCTTCGTTCGGTTGTTTCTGTATCCAATAGTGACACAACTAATCGTCCCAGGCGGCTTCAATCTGTTGCGAAAGTGCCAAATCCTATGGCAACTGTTATTAAGGCTGTGACTGAGGCAGCTGAAGATGTGATAAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTTGTGATATGGATTTAACAGAGTCCAGTGGCCAAATTGCAGAATATGGAGTAACTGTAGGGGATGATAAATATGGGGAACTCAATCGTACACAGGATCGACCATACTCAGCCACCTATCTCGGGAGAAGCAATTATAGTGGGAAATATGCTCCCAATGAGGGCATGTTTGAACCTGAAACTCGATTAGCATCAGATTCTATATCTGAAAATGAAGATGTTAATATTCAGGGTCACAGAGTACTTGATGATTCTTGGACTGCAGAATCAGGAGTGAGAAAGGGAGGCAATTTGCGAACTGTGCCATTCAGGGATGTCGAGAACTCTGAAGATGAACGCATGACACAATACAAACAGAAGGATCAACCTTCCTTAGTTACAAATTCCTCACGTGACATTGTAAACATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCCTGGGCAGATTCCTGAACTTGGTGGTCAAAAGTTTTTGCAGGAGGGTGAGTTACAAGGTACCGGATCTGCTGTGCAAGTTACGGAGAATGGTGAGCCAGTTAATATTGTTAACCAACAGAAAAGGCCTGCAGCAAACCTTCAAAAAGAGTTCCAGAAGCCTCCTGTATCTGCTAATGGCCAATTTGCTGCCTCTCGTCCTGTAGAGGATGCTGATGCTCGAACCATTTTTGTTAGCAATGTTCACTTTGCTGCTACAAAGGATACCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTGTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTCCGCTTATGTAGAGTTCATGAGAAAAGAATCTGCAGAGAACGCGTTGTCTCTTGACGGGACCTCGTTTATGTCTAGGATTCTCAAGGTCGTAAGGAAAAATAGTTCACAATTAGAAGGTGCTTCAATTGTTACCAGGCCTCGTGCTGTGCGTGGCTCGCCATTTCCTACTCCTAGATTTACCAGAGGTCCATTCCTGAGGGGCGTTCCTGGTGGACTTAGGGCTCGTCCCCCACTAAAACTTGGTGCCAGGAGCATGCAGTGGAAGCGAGATAGTCAGACCACAACTGCTGACAATGGTGCTTCTCTCTCTGGTAATTCTGTACTCTCATCTGGTGCTCGAAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGCGGACAAGTAGGGGAACCACCACTCGATTGATAGAGTTGTTATCTCCTCAAGAAACTGTTCTCAAAATTATTTTGCGGAAAGAGAATCACGCAGATCAAGTATGACCTCCCCAAATTTGGTTTTGTTTTTTGTTTTGGTGGTTCATGATTCTTCGTGCATCATGGTGGAGGAAGATATTTTTTTTGTTTCCATTGGGGAATGGAAATTGGTGAGTTTATAGCTAGGAAACTCATGATGGCGGTTCAGATGATTTCACAATTTTGAGCTCCCACCGAATTCTTATTCAGCTACTAGATTAAATTTGTGAATAGAGTAAGAGTAGACTGNTTTTTGTTGTTCAACTGATATTATGATATTTTGTAATTTTTAATACTGATGTGAAAAAAGGAAAAGAAAAATA

Coding sequence (CDS)

ATGGGTAGTGAGGATCGTGTCGATGATCGGACGTTCAAGGTTGATTTCAGTGGCGAGGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAAAGAAGAAGCACAGAATGAACTTAATGTATTTTTGGCAGATGAGAGCCGTTCTTTTGTATCTTGGCTGTGGGATCATCTGGCTTCATGTTTGGATTTATACGTGGAGCCGCCTACTAAATCTTCTGCCAATGACAATGAGGTGCCCAGACCAAAGTCTCCGGTAGAAGAACCAGATATAAGAAATAATTCTAACAATCTGGAGTCTGATTCAGAAAGAGGGAAGTCGGAACAATTATCTAGCAGACAGCATAATAGGGAATGGAAAGGAATTGCTAATGATGAAACCCGTGTTGCTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCCAGTCACAGGAAAAGGAGCCGAGATGATGATCATCAAGGCACTGAGAGGGAGGCAGCCTTTCAGGTAAGCATTGCTGCCCCTCGGCGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAAGCCCTCTAATGAAGATAAGGAGACCCTTCCAAAGCGTCTTCGTTCGGTTGTTTCTGTATCCAATAGTGACACAACTAATCGTCCCAGGCGGCTTCAATCTGTTGCGAAAGTGCCAAATCCTATGGCAACTGTTATTAAGGCTGTGACTGAGGCAGCTGAAGATGTGATAAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTTGTGATATGGATTTAACAGAGTCCAGTGGCCAAATTGCAGAATATGGAGTAACTGTAGGGGATGATAAATATGGGGAACTCAATCGTACACAGGATCGACCATACTCAGCCACCTATCTCGGGAGAAGCAATTATAGTGGGAAATATGCTCCCAATGAGGGCATGTTTGAACCTGAAACTCGATTAGCATCAGATTCTATATCTGAAAATGAAGATGTTAATATTCAGGGTCACAGAGTACTTGATGATTCTTGGACTGCAGAATCAGGAGTGAGAAAGGGAGGCAATTTGCGAACTGTGCCATTCAGGGATGTCGAGAACTCTGAAGATGAACGCATGACACAATACAAACAGAAGGATCAACCTTCCTTAGTTACAAATTCCTCACGTGACATTGTAAACATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCCTGGGCAGATTCCTGAACTTGGTGGTCAAAAGTTTTTGCAGGAGGGTGAGTTACAAGGTACCGGATCTGCTGTGCAAGTTACGGAGAATGGTGAGCCAGTTAATATTGTTAACCAACAGAAAAGGCCTGCAGCAAACCTTCAAAAAGAGTTCCAGAAGCCTCCTGTATCTGCTAATGGCCAATTTGCTGCCTCTCGTCCTGTAGAGGATGCTGATGCTCGAACCATTTTTGTTAGCAATGTTCACTTTGCTGCTACAAAGGATACCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTGTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTCCGCTTATGTAGAGTTCATGAGAAAAGAATCTGCAGAGAACGCGTTGTCTCTTGACGGGACCTCGTTTATGTCTAGGATTCTCAAGGTCGTAAGGAAAAATAGTTCACAATTAGAAGGTGCTTCAATTGTTACCAGGCCTCGTGCTGTGCGTGGCTCGCCATTTCCTACTCCTAGATTTACCAGAGGTCCATTCCTGAGGGGCGTTCCTGGTGGACTTAGGGCTCGTCCCCCACTAAAACTTGGTGCCAGGAGCATGCAGTGGAAGCGAGATAGTCAGACCACAACTGCTGACAATGGTGCTTCTCTCTCTGGTAATTCTGTACTCTCATCTGGTGCTCGAAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGCGGACAAGTAG

Protein sequence

MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNNSNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDTTNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIAEYGVTVGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDIVNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPKPADK

Homology

[Close]

BLAST of Cp4.1LG03g04410 vs. Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-15
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 1


Query: 435 QDPGQIPELGGQKFLQEGELQGTGSAV-QVTENGEPVNIVNQQKRPAANLQKEFQKPPVS 494
           ++PG   EL G + +++ EL+   + V ++ E  E +  +  +     N+      PP +
Sbjct: 93  EEPG---ELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP----PPGN 152

Query: 495 ANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGS 554
           A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ D  TG PKG 
Sbjct: 153 AGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGF 212

Query: 555 AYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRA 602
           AY+EF  KES   +L+LD + F  R +KVV K +++  G S   R  PRA
Sbjct: 213 AYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA 254

[Close]

BLAST of Cp4.1LG03g04410 vs. Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-15
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 1


Query: 435 QDPGQIPELGGQKFLQEGELQGTGSAV-QVTENGEPVNIVNQQKRPAANLQKEFQKPPVS 494
           ++PG   EL G + +++ EL+   + V ++ E  E +  +  +     N+      PP +
Sbjct: 94  EEPG---ELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP----PPGN 153

Query: 495 ANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGS 554
           A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ D  TG PKG 
Sbjct: 154 AGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGF 213

Query: 555 AYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRA 602
           AY+EF  KES   +L+LD + F  R +KVV K +++  G S   R  PRA
Sbjct: 214 AYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA 255

[Close]

BLAST of Cp4.1LG03g04410 vs. Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-15
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 1


Query: 435 QDPGQIPELGGQKFLQEGELQGTGSAV-QVTENGEPVNIVNQQKRPAANLQKEFQKPPVS 494
           ++PG   EL G + +++ EL+   + V ++ E  E +  +  +     N+      PP +
Sbjct: 94  EEPG---ELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP----PPGN 153

Query: 495 ANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGS 554
           A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ D  TG PKG 
Sbjct: 154 AGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGF 213

Query: 555 AYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRA 602
           AY+EF  KES   +L+LD + F  R +KVV K +++  G S   R  PRA
Sbjct: 214 AYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA 255

[Close]

BLAST of Cp4.1LG03g04410 vs. Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=1 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 7.9e-14
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 435 QDPGQIPELGGQKFLQEGELQGTGSAV-QVTENGEPVNIVNQQKRPAANLQKEFQKPPVS 494
           ++PG +    G   +++ EL+   + V ++ E  E +  +  +     N+      PP +
Sbjct: 96  EEPGLVEADPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP----PPGN 155

Query: 495 ANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGS 554
           A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ D  +G PKG 
Sbjct: 156 AGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF 215

Query: 555 AYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQ 590
           AY+EF  KES   +L+LD + F  R +KV+ K +++
Sbjct: 216 AYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 247

[Close]

BLAST of Cp4.1LG03g04410 vs. Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-13
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 1


Query: 435 QDPGQIPELGGQKFLQEGELQGTGSAV-QVTENGEPVNIVNQQKRPAANLQKEFQKPPVS 494
           ++PG +    G   +++ EL+   + V ++ E  E +  +  +     N+      PP +
Sbjct: 100 EEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSP----PPGN 159

Query: 495 ANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGS 554
           A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ D  +G PKG 
Sbjct: 160 AGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF 219

Query: 555 AYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRAVRGSPFPTPR 614
           AY+EF  KES   +L+LD + F  R +KV+ K +++  G S   R  PRA   +      
Sbjct: 220 AYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR-PGISTTDRGFPRARYRARTTNYN 279

Query: 615 FTRGPFLRGVPGGLRARPPLKLGARSMQW 641
            +R  F  G     R R   +  AR+  W
Sbjct: 280 SSRSRFYSGFNSRPRGR-VYRGRARATSW 302

[Close]

BLAST of Cp4.1LG03g04410 vs. TrEMBL
Match: A0A0A0L9I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697930 PE=4 SV=1)

HSP 1 Score: 1118.6 bits (2892), Expect = 0.0e+00
Identity = 580/681 (85.17%), Postives = 622/681 (91.34%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGSEDRVDDRTFKVDF+G+GMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP K+SAN  EVP  KSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASAN--EVPTQKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+  REW+GIAN+ETRV PRSEVSRVKHSSPEQVP HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDT 240
            DDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVVS SNSDT
Sbjct: 186 PDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASNSDT 245

Query: 241 TNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300
           TNRPRRLQSVAKVPNPMATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTESSG+ +
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRPS 305

Query: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYG T V +D+YG++N ++DRPYSATYL R NY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNIQGHRV DDSWTAESGVRKG NLRTV FR VENS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
           VNISVNVNTWKPPHYQD GQIPEL GQKFLQE ELQGT SAVQV ENGEPV +VNQ+K P
Sbjct: 426 VNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQ+EFQKPP+SANGQFA +RP+E+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS V  P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KL ARSMQWKRD+QTTTADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNS 665

Query: 661 VLSSGARSLTYVRTEPKPADK 681
           + S GARSLTYVRTEPKP DK
Sbjct: 666 IPSPGARSLTYVRTEPKPVDK 684

[Close]

BLAST of Cp4.1LG03g04410 vs. TrEMBL
Match: F6HBB3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01190 PE=4 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 6.8e-190
Identity = 401/703 (57.04%), Postives = 496/703 (70.55%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           M   DR+DDRTF+V+FSG+G A+LRER+K K+KEFMGDYTDDTLVEYVIVLLRNGRRKEE
Sbjct: 1   MEGADRMDDRTFRVNFSGDGAARLRERVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           A+NELNVFL D+S SFVSWLWDHL S L LYV P     +  +E+   K  + E   RN+
Sbjct: 61  ARNELNVFLGDDSHSFVSWLWDHLDSHLQLYVLP---QESYPDEIAETKHTLGEHTERND 120

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIAND---------------ETRVAPRSEVSRVK 180
           S +L+S+SERG S +  SR HNREWKG+A D               +T      +V   K
Sbjct: 121 SLHLDSESERGNSLRSRSR-HNREWKGLARDGAEPPPLRSSEDDHVQTEEKTHRKVGHAK 180

Query: 181 HSSPEQVPSHRKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETL 240
            S   + P+ +KR+R DD +  +RE   Q +I APRRLLQFA+RDAVAT++PSN   E  
Sbjct: 181 RSLSPKHPNQKKRNRPDDLKQAKREVVSQATINAPRRLLQFAVRDAVATSRPSNLAAEPK 240

Query: 241 PKRLRSVVSVSNSDTT--NRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSS-SVFDR 300
            KRLRSVVS S  D++  +RP+RLQSVA++P+ MAT IKAV EAAEDVI+V+SS +VFDR
Sbjct: 241 LKRLRSVVSTSTGDSSLDDRPQRLQSVARMPSAMATAIKAVAEAAEDVIKVRSSGNVFDR 300

Query: 301 LGRQSCDMDLTESSGQIAEYGVTVGDDK-YGELNRTQDRPYSATYLGRSNYSGKYAPNEG 360
           LGR    MDL+E S Q A +  T  +D  Y +  +  ++  S T+L RS YS  YA N  
Sbjct: 301 LGRGPRGMDLSEVSDQQAGFRETGTEDGGYEDFKQIPEKTRS-THLQRSAYSEHYAGNVT 360

Query: 361 MFEPETRLASDSISENE---DVNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDE 420
           M E ET LASDS S+NE   DVN+ G R++D S +  +G  KG +   V +   +N+++ 
Sbjct: 361 MLESETGLASDSASDNEGYDDVNLMGRRIMDVSQSGTTGGNKGDDSLMVQYSVAKNADEG 420

Query: 421 RMTQYK-QKDQPSLVTNSSRDIVNISVNVNTWKPP-HYQDPGQIPELGGQKFLQEGELQG 480
             T     + QPS V N+SR IVNISVNVNTWKPP HYQ P ++ E+ GQK +Q  E  G
Sbjct: 421 MRTMRSIDQGQPSAVANTSRKIVNISVNVNTWKPPAHYQGPREVEEVDGQKPVQGNET-G 480

Query: 481 TG-SAVQVTE-NGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPVEDADARTIFV 540
           TG S V++ + NG PV++ N   +PA + Q+E QK   SA G ++  RP+EDAD+RTIFV
Sbjct: 481 TGKSGVRLMKANGNPVSVGNGNAKPAVDTQRESQKMQPSAPGSYSTGRPLEDADSRTIFV 540

Query: 541 SNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTS 600
           +NVHFAATKD+LSRHFNKFGEVVKVIIVTDA TGQPKGSAYVEFMRKE+AE+ALSLDGTS
Sbjct: 541 NNVHFAATKDSLSRHFNKFGEVVKVIIVTDAATGQPKGSAYVEFMRKEAAEHALSLDGTS 600

Query: 601 FMSRILKVVRKNSSQLEGASIVTRPRAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLG 660
           FMSRILKVV+++S+  E A  ++ PR  RGSPF   RF R PF RG+PG  RAR P+KLG
Sbjct: 601 FMSRILKVVKRSSTHQEAAPGMSWPRIARGSPFAAARFARVPFQRGIPGAFRARLPVKLG 660

Query: 661 ARSMQWKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPKP 678
           ARS+QWKRD+Q T A++GA  S NSV S  ARSLTYVRTEPKP
Sbjct: 661 ARSLQWKRDAQPTLAESGAPASNNSVPSPTARSLTYVRTEPKP 697

[Close]

BLAST of Cp4.1LG03g04410 vs. TrEMBL
Match: A0A0B0MI11_GOSAR (Polyadenylate-binding 2-A OS=Gossypium arboreum GN=F383_19189 PE=4 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 8.9e-182
Identity = 380/700 (54.29%), Postives = 486/700 (69.43%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS DRVDD TFKV+FSG+G AKL++R+K K+KEFMGDYTDDTLVEYVIVLLRNGRRK+E
Sbjct: 3   MGSVDRVDDLTFKVNFSGDGAAKLKDRVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKDE 62

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           A NELNVFL D+S SFVSWLWDHLAS LDLY   P++    D       + +    I   
Sbjct: 63  AMNELNVFLGDDSDSFVSWLWDHLASNLDLYA--PSREPHLDEGTRT--TVLGNHSIGAE 122

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAP---------------RSEVSRVK 180
           S+ L++DSERGKS +    +HNR+WKG+  D     P                 +VSR +
Sbjct: 123 SHQLDTDSERGKSTKFPRNRHNRDWKGLVRDAAEPPPLRSSEVENIRFEEKSSRKVSRGR 182

Query: 181 HSSPEQVPSHRKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETL 240
            +SP   P+ +KRSR DD Q  +REA  Q++I APRRLLQFA+RDAV T++     KE  
Sbjct: 183 STSPR--PTQKKRSRPDDRQPIKREAVPQMNIDAPRRLLQFAVRDAVGTSRAPISAKEPS 242

Query: 241 PKRLRSVVSVSNSDTTNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSS-SVFDRLG 300
            KRLRSVVS S+ +   RP+R+QSVA+VPNPMATVIKAV EAAEDV +VK++ SVFDRLG
Sbjct: 243 SKRLRSVVSTSSGELPARPKRIQSVARVPNPMATVIKAVAEAAEDVTKVKNAGSVFDRLG 302

Query: 301 RQSCDMDLTESSGQIAEYGVTV-GDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMF 360
                MD+ ++     E+  ++  D++YG+L +  ++ +SA Y  R  Y+G++  N    
Sbjct: 303 P---GMDVLDTRDLHPEFRESLTEDEEYGDLKQPLEKTHSA-YYQREEYAGRHVGNVTAL 362

Query: 361 EPETRLASDSISENE---DVNIQGHRVLDDSWTAESG---VRKGGNLRTVPFRDVENSED 420
           E +T LAS+S+S+NE   DV++ GH V+D+S T  +G     KG N   V + +V   ++
Sbjct: 363 ESQTGLASESLSDNEWYGDVDVVGHGVMDESHTGHTGRSSGNKGDNSLMVQY-NVAKDDE 422

Query: 421 ERMTQYKQKDQPSLVTNSSRDIVNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGT 480
              T+ K ++Q ++VTN+SR IVNISVNVNTWKPPHYQ+  ++ EL G+K L E E    
Sbjct: 423 ILQTRNKDQNQSTIVTNTSRKIVNISVNVNTWKPPHYQEAREVSELDGRKSLPESEAVAN 482

Query: 481 GSAVQVTENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNV 540
            +  ++ ENG PVN+ N   + AA  Q+  QK    ++  +AA+RP+EDAD+RTIFVSNV
Sbjct: 483 KANHRLMENGNPVNVGNGNVKGAAYNQEPSQKAVQPSSASYAAARPLEDADSRTIFVSNV 542

Query: 541 HFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMS 600
           HFAATKD+LSRHFNKFG+V+KVIIVTDA TGQPKGSAYVEFMRKE+AENALSLDGTSFMS
Sbjct: 543 HFAATKDSLSRHFNKFGDVLKVIIVTDAATGQPKGSAYVEFMRKEAAENALSLDGTSFMS 602

Query: 601 RILKVVRKNSSQLEGAS-IVTRPRAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGAR 660
           RILKVV+K+S+  E A+ ++T PR  RGSPF   RF R  F RG+PG  R   P+K GAR
Sbjct: 603 RILKVVKKSSAPQEAAAPVMTWPRVARGSPFVAARFGRASFARGMPGAFRPHLPIKPGAR 662

Query: 661 SMQWKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPK 677
           S QWKRD+QTTT    A ++G ++ S   RSLTYVRTEPK
Sbjct: 663 SFQWKRDAQTTTTPTDA-ITGTNISSPTFRSLTYVRTEPK 690

[Close]

BLAST of Cp4.1LG03g04410 vs. TrEMBL
Match: A0A0D2MT63_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1)

HSP 1 Score: 632.1 bits (1629), Expect = 7.8e-178
Identity = 381/702 (54.27%), Postives = 483/702 (68.80%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS DRV+D TFKV+FSG+G AKL++R+K K+KEFMGDYTDDTLVEYVIVLLRNGRRK E
Sbjct: 3   MGSVDRVNDLTFKVNFSGDGAAKLKDRVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKGE 62

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           A NELNVFL D+S SFVSWLWDHLAS LDLY   P++    D       + +    I   
Sbjct: 63  AMNELNVFLGDDSESFVSWLWDHLASNLDLYA--PSREPHLDEGTRT--TVLGNQSIGAE 122

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAP---------------RSEVSRVK 180
           S+ L++DSERGKS +    +HNR+WKG+  D     P                 +VSR +
Sbjct: 123 SHQLDTDSERGKSTKFPRNRHNRDWKGLVRDAAEPPPLRSSEVENIRFEEKSSRKVSRGR 182

Query: 181 HSSPEQVPSHRKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETL 240
            +SP+  P+ +KRSR D+ Q  +REA    +I APRRLLQFA+RDAV T++     KE  
Sbjct: 183 STSPQ--PTQKKRSRPDERQPIKREAV--PNIDAPRRLLQFAVRDAVGTSRAPISAKEPS 242

Query: 241 PKRLRSVVSVSNSDTTNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSS-SVFDRLG 300
            KRLRSVVS S+ D   RPRR+QSVA+VPNPMATVIKAV EAAEDV +VK++ SVFDRLG
Sbjct: 243 SKRLRSVVSTSSGDLPARPRRIQSVARVPNPMATVIKAVAEAAEDVTKVKNAGSVFDRLG 302

Query: 301 RQSCDMDLTESSGQIAEYGVTV-GDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMF 360
                MD+ E+     E+  ++  D++YG+LN+  ++ +SA Y  R   +G++  N    
Sbjct: 303 P---GMDVLETGDLHPEFRESLTEDEEYGDLNQPLEKTHSA-YYQREECAGRHVGNVTAL 362

Query: 361 EPETRLASDSISENE---DVNIQGHRVLDDSWTAESG---VRKGGNLRTVPFRDVENSED 420
           E +T LAS+S+S+NE   DV++ GH V+D+S T  +G     KG N   V + +V   ++
Sbjct: 363 ESQTGLASESLSDNEWYGDVDVVGHGVMDESHTGHAGRSSGNKGDNSLMVQY-NVAKDDE 422

Query: 421 ERMTQYKQKDQPSLVTNSSRDIVNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGT 480
              T+ K ++Q ++ TN+SR IVNISVNVNTWKPPHYQ+P +  EL  +K L E E    
Sbjct: 423 ILQTRNKDQNQSTIATNTSRKIVNISVNVNTWKPPHYQEPREASELDSRKPLPESEAVAN 482

Query: 481 GSAVQVTENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNV 540
            +  ++ ENG PVN+ N   + AA  Q+  QK  V  +  +AA+RP+EDAD+RTIFVSNV
Sbjct: 483 KANHRLMENGNPVNVGNGNVKGAAYNQELSQK-AVQPSASYAAARPLEDADSRTIFVSNV 542

Query: 541 HFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMS 600
           HFAATKD+LSRHFNKFG+V+KVIIVTDA TGQPKGSAYVEFMRKE+A+NALSLDGTSFMS
Sbjct: 543 HFAATKDSLSRHFNKFGDVLKVIIVTDAATGQPKGSAYVEFMRKEAADNALSLDGTSFMS 602

Query: 601 RILKVVRKNSSQLEGAS-IVTRPRAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGAR 660
           RILKVV+K+S+  E A+ ++T PR  RGSPF   RF R  F RG+PG  R   P+K GAR
Sbjct: 603 RILKVVKKSSAPQEAAAPVMTWPRVARGSPFVAARFGRASFARGMPGAFRPHLPVKPGAR 662

Query: 661 SMQWKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPKPA 679
           S QWKRD+QTTT    A ++G +V S   RSLTYVRTEPK A
Sbjct: 663 SFQWKRDAQTTTTRTDA-VTGTTVSSPTFRSLTYVRTEPKSA 689

[Close]

BLAST of Cp4.1LG03g04410 vs. TrEMBL
Match: A0A0D2QYN9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 1.4e-174
Identity = 378/702 (53.85%), Postives = 480/702 (68.38%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS DRV+D TFKV+FSG+G AKL++R+K K+KEFMGDYTDDTLVEYVIVLLRNGRRK E
Sbjct: 3   MGSVDRVNDLTFKVNFSGDGAAKLKDRVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKGE 62

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           A NELNVFL D+S SFVSWLWDHLAS LDLY   P++    D       + +    I   
Sbjct: 63  AMNELNVFLGDDSESFVSWLWDHLASNLDLYA--PSREPHLDEGTRT--TVLGNQSIGAE 122

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAP---------------RSEVSRVK 180
           S+ L++DSERGKS +    +HNR+WKG+  D     P                 +VSR +
Sbjct: 123 SHQLDTDSERGKSTKFPRNRHNRDWKGLVRDAAEPPPLRSSEVENIRFEEKSSRKVSRGR 182

Query: 181 HSSPEQVPSHRKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETL 240
            +SP+  P+ +KRSR D+ Q  +REA    +I APRRLLQFA+RDAV T++     KE  
Sbjct: 183 STSPQ--PTQKKRSRPDERQPIKREAV--PNIDAPRRLLQFAVRDAVGTSRAPISAKEPS 242

Query: 241 PKRLRSVVSVSNSDTTNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSS-SVFDRLG 300
            KRLRSVVS S+ D   RPRR+QSVA+VPNPMATVIKAV EAAEDV +VK++ SVFDRLG
Sbjct: 243 SKRLRSVVSTSSGDLPARPRRIQSVARVPNPMATVIKAVAEAAEDVTKVKNAGSVFDRLG 302

Query: 301 RQSCDMDLTESSGQIAEYGVTV-GDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMF 360
                MD+ E+     E+  ++  D++YG+LN+  ++ +SA Y  R   +G++  N    
Sbjct: 303 P---GMDVLETGDLHPEFRESLTEDEEYGDLNQPLEKTHSA-YYQREECAGRHVGNVTAL 362

Query: 361 EPETRLASDSISENE---DVNIQGHRVLDDSWTAESG---VRKGGNLRTVPFRDVENSED 420
           E +T LAS+S+S+NE   DV++ GH V+D+S T  +G     KG N   V + +V   ++
Sbjct: 363 ESQTGLASESLSDNEWYGDVDVVGHGVMDESHTGHAGRSSGNKGDNSLMVQY-NVAKDDE 422

Query: 421 ERMTQYKQKDQPSLVTNSSRDIVNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGT 480
              T+ K ++Q ++ TN+SR IVNISVNVNTWKPPHYQ+P +  EL  +K L E E    
Sbjct: 423 ILQTRNKDQNQSTIATNTSRKIVNISVNVNTWKPPHYQEPREASELDSRKPLPESEAVAN 482

Query: 481 GSAVQVTENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNV 540
            +  ++ ENG PVN+ N   + AA  Q+  QK  V  +  +AA+RP+EDAD+RTIF   V
Sbjct: 483 KANHRLMENGNPVNVGNGNVKGAAYNQELSQK-AVQPSASYAAARPLEDADSRTIF---V 542

Query: 541 HFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMS 600
           HFAATKD+LSRHFNKFG+V+KVIIVTDA TGQPKGSAYVEFMRKE+A+NALSLDGTSFMS
Sbjct: 543 HFAATKDSLSRHFNKFGDVLKVIIVTDAATGQPKGSAYVEFMRKEAADNALSLDGTSFMS 602

Query: 601 RILKVVRKNSSQLEGAS-IVTRPRAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGAR 660
           RILKVV+K+S+  E A+ ++T PR  RGSPF   RF R  F RG+PG  R   P+K GAR
Sbjct: 603 RILKVVKKSSAPQEAAAPVMTWPRVARGSPFVAARFGRASFARGMPGAFRPHLPVKPGAR 662

Query: 661 SMQWKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPKPA 679
           S QWKRD+QTTT    A ++G +V S   RSLTYVRTEPK A
Sbjct: 663 SFQWKRDAQTTTTRTDA-VTGTTVSSPTFRSLTYVRTEPKSA 686

[Close]

BLAST of Cp4.1LG03g04410 vs. TAIR10
Match: AT3G12640.1 (AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-115
Identity = 298/696 (42.82%), Postives = 403/696 (57.90%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS D VDDRTF  DFS EG+AKL+E +K K+KE+MGDYTDD LVEYVIVLLRNGRRKEE
Sbjct: 1   MGSADLVDDRTFNGDFSVEGVAKLKEMVKDKLKEYMGDYTDDILVEYVIVLLRNGRRKEE 60

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLY----VEPPT-KSSANDNEVPRPKSPVEEP 120
           A NEL +FL D+S SFV+WLWDHLA  +D Y    VE  T KSS   +   +   P    
Sbjct: 61  ANNELKIFLGDDSDSFVAWLWDHLAESVDEYFSSNVEGTTIKSSLISSHEDKALVP---- 120

Query: 121 DIRNNSNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSH 180
                   L+S+ ++G+S++ +  +  R+W+         +  + VS +      +  S 
Sbjct: 121 --------LDSEYDKGRSDKSNGARRGRQWR---------SQPTNVSEIPPLLSSEAQSQ 180

Query: 181 RKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSV 240
           RKRSR DD +  +REA   VS    RRLLQFA+RDA+A ++P+N   E+  KRLRSVVS 
Sbjct: 181 RKRSRTDDSRNEQREAKPDVS----RRLLQFAVRDALAISRPANSSTESSLKRLRSVVST 240

Query: 241 S--NSDTTNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSS-SVFDRLGRQSCDMDL 300
           S  NS   +  R+++SVA+V NPMATV+KAV EAAED  + KS  SVFDR+   S   + 
Sbjct: 241 STQNSSDPDPARKIRSVARVVNPMATVMKAVAEAAEDAKKPKSGRSVFDRIS-HSTGSET 300

Query: 301 TESSGQIAEYGVTVGDDKYGELNRTQDR---PYSATYLGRSNYSGKYAPNEGMFEPETRL 360
            + +  + E  V+  D++    ++ Q+     Y+ +      Y      N+    P+   
Sbjct: 301 LDQNMVLGE--VSPKDEESRNFSQGQEAVQLQYTQSLANNGVYFENMTTNDTGLNPD--F 360

Query: 361 ASDSISENEDVNIQ------GHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQY 420
           +SD       VN+       G+R+               N  ++  R V++S+  + T Y
Sbjct: 361 SSDRGRLGSSVNVSHPSTYLGNRI--------------NNPNSLQHRLVDDSKRVKGTNY 420

Query: 421 KQKDQPSLVTNSSRDIVNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQV 480
            Q   P + T       + S N++T K    ++  +IP++G Q+++ EG L  + +  Q+
Sbjct: 421 -QNRLPEVAT--KHKTASFSGNIDTGKTVKLEEQRKIPDVGLQRYMDEGRLVSSEATTQL 480

Query: 481 -TENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAAT 540
            T+      I N   +PAA++ KE      S  G  + +RP+EDA +RTIFV+NVHF AT
Sbjct: 481 STQKILGDTIGNGNVKPAASV-KEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGAT 540

Query: 541 KDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKV 600
           KD+LSRHFNKFGEV+K  IVTD  TGQP GSAY+EF RKE+AENALSLDGTSFMSRILK+
Sbjct: 541 KDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI 600

Query: 601 VR-KNSSQLEGASIVTRPRAVRGSPFPTPRFTRGP-FLRGVPGGLRARPPLKLGARSMQW 660
           V+  N    E AS ++  R          RFTR P + RG  G +R R  ++ G RSMQW
Sbjct: 601 VKGSNGQNQEAASSMSWSRG--------GRFTRAPSYFRG--GAVRGRSVVRGGGRSMQW 631

Query: 661 KRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPK 677
           KRDS    AD G   + N+V  + ARSLTYVR E K
Sbjct: 661 KRDS----ADTG---NNNNVAPNNARSLTYVRAESK 631

[Close]

BLAST of Cp4.1LG03g04410 vs. TAIR10
Match: AT5G51120.2 (AT5G51120.2 polyadenylate-binding protein 1)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-12
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 483 LQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIV 542
           L+ E++K  +++ G  AA +  E+ D+R+I+V NV +A T + + +HF   G V +V I+
Sbjct: 117 LEFEYEKEIINS-GVSAAEK--EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 176

Query: 543 TDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAV 602
           TD   GQPKG AYVEF+  E+ +N+L L+ +    R +KV  K ++ + G     R    
Sbjct: 177 TD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTN-VPG----MRQFRG 236

Query: 603 RGSPFPTPRFTRGPFLRGVP 623
           RG PF   R  RG F+ GVP
Sbjct: 237 RGRPF---RPMRG-FMPGVP 243

[Close]

BLAST of Cp4.1LG03g04410 vs. TAIR10
Match: AT2G24350.1 (AT2G24350.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.6e-12
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1


Query: 484 QKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHF-NKFGEVVKVIIV 543
           QK  ++ P   +G+      V  +++R I V+NV++AA K+ +S  F +K G V  VI+V
Sbjct: 420 QKVEERKPSPQSGESQYQEDV--SESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVV 479

Query: 544 TDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAV 603
           TD  T  PKG+A+V F  KES   A++L GT F SR +KV       +    +   P+ V
Sbjct: 480 TDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYSRPIKV---RMHVIASGVVSAAPQIV 537

Query: 604 RGS 606
            GS
Sbjct: 540 TGS 537

[Close]

BLAST of Cp4.1LG03g04410 vs. TAIR10
Match: AT5G65260.1 (AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-11
Identity = 55/194 (28.35%), Postives = 98/194 (50.52%), Query Frame = 1


Query: 438 GQIPELGGQKFLQEGELQGTGSAVQVTE-NGEPVNIVNQQKRPAANLQKE---FQKPPVS 497
           G+IP++G      +G+++     + +   + + V  +++ K+    ++ E    ++    
Sbjct: 11  GEIPDVGEM----DGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAK 70

Query: 498 ANGQFAASRPV---------EDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTD 557
              +  A  P          E+ DAR++FV NV +A T + + +HF   G V +V I+TD
Sbjct: 71  VEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD 130

Query: 558 ATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRG 617
              GQPKG AYVEF+  E+ + AL L+ +    R LKV++K ++       + + R  R 
Sbjct: 131 -KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTN----VPGLKQFRGRRF 190

Query: 618 SPFPTPRFTRGPFL 619
           +P+   RF R PF+
Sbjct: 191 NPYMGYRFRR-PFM 194

[Close]

BLAST of Cp4.1LG03g04410 vs. TAIR10
Match: AT5G10350.1 (AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-10
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 438 GQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRPAANLQK-----EFQKPPV 497
           G+IPE+G                  VTE  E    + + +  AA L++     E +    
Sbjct: 11  GEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGAT 70

Query: 498 SANGQFAASRP-VEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPK 557
                 AA++   E+ DAR+++V NV +A T + +  HF   G V +V I+ D   GQPK
Sbjct: 71  QDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPK 130

Query: 558 GSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSS 589
           G AYVEF+  E+ + AL L+ +    R LKV  K ++
Sbjct: 131 GFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTN 166

[Close]

BLAST of Cp4.1LG03g04410 vs. NCBI nr
Match: gi|659123692|ref|XP_008461790.1| (PREDICTED: nuclear localization sequence-binding protein isoform X1 [Cucumis melo])

HSP 1 Score: 1129.4 bits (2920), Expect = 0.0e+00
Identity = 587/681 (86.20%), Postives = 631/681 (92.66%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGSEDRVDDRTFKVDF+GEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP KSSAN  EVPRPKSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSAN--EVPRPKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+ NREW+GIAN+ETRV P+SEVSRVKHSSPEQVP+HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDT 240
            DD QGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVVS SNSDT
Sbjct: 186 PDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASNSDT 245

Query: 241 TNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300
           TNRPRRLQSVAKVPNPMATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTESSG++ 
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRLG 305

Query: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVT V +D+YG++N ++DRPYSATYL RSNY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNI+GHRV DDSWTAESGVRKG NLRTV FR V+NS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
           VNISVNVNTWKPPHYQD GQIPEL GQKFLQE ELQGT SAVQVTENGEPV +VNQ+K P
Sbjct: 426 VNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVTENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQKEFQKPP+SANGQFA++RP+E+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS VT P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KLGARSMQWKRD+QT TADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNS 665

Query: 661 VLSSGARSLTYVRTEPKPADK 681
           + S GARSLTYVRTEPKPADK
Sbjct: 666 IPSPGARSLTYVRTEPKPADK 683

[Close]

BLAST of Cp4.1LG03g04410 vs. NCBI nr
Match: gi|778682812|ref|XP_011651783.1| (PREDICTED: nucleolin 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 1118.6 bits (2892), Expect = 0.0e+00
Identity = 580/681 (85.17%), Postives = 622/681 (91.34%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGSEDRVDDRTFKVDF+G+GMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP K+SAN  EVP  KSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASAN--EVPTQKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+  REW+GIAN+ETRV PRSEVSRVKHSSPEQVP HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDT 240
            DDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVVS SNSDT
Sbjct: 186 PDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASNSDT 245

Query: 241 TNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300
           TNRPRRLQSVAKVPNPMATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTESSG+ +
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRPS 305

Query: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYG T V +D+YG++N ++DRPYSATYL R NY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNIQGHRV DDSWTAESGVRKG NLRTV FR VENS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
           VNISVNVNTWKPPHYQD GQIPEL GQKFLQE ELQGT SAVQV ENGEPV +VNQ+K P
Sbjct: 426 VNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQ+EFQKPP+SANGQFA +RP+E+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS V  P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KL ARSMQWKRD+QTTTADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNS 665

Query: 661 VLSSGARSLTYVRTEPKPADK 681
           + S GARSLTYVRTEPKP DK
Sbjct: 666 IPSPGARSLTYVRTEPKPVDK 684

[Close]

BLAST of Cp4.1LG03g04410 vs. NCBI nr
Match: gi|659123694|ref|XP_008461791.1| (PREDICTED: nuclear localization sequence-binding protein isoform X2 [Cucumis melo])

HSP 1 Score: 1058.5 bits (2736), Expect = 4.9e-306
Identity = 561/681 (82.38%), Postives = 605/681 (88.84%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGSEDRVDDRTFKVDF+GEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP KSSAN  EVPRPKSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSAN--EVPRPKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+ NREW+GIAN+ETRV P+SEVSRVKHSSPEQVP+HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDT 240
            DD QGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVVS SNSDT
Sbjct: 186 PDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASNSDT 245

Query: 241 TNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300
           TNRPRRLQSVAKVPNPMATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTESSG++ 
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRLG 305

Query: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVT V +D+YG++N ++DRPYSATYL RSNY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNI+GHRV DDSWTAESGVRKG NLRTV FR V+NS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
                                       FLQE ELQGT SAVQVTENGEPV +VNQ+K P
Sbjct: 426 ----------------------------FLQESELQGTRSAVQVTENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQKEFQKPP+SANGQFA++RP+E+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS VT P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KLGARSMQWKRD+QT TADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNS 655

Query: 661 VLSSGARSLTYVRTEPKPADK 681
           + S GARSLTYVRTEPKPADK
Sbjct: 666 IPSPGARSLTYVRTEPKPADK 655

[Close]

BLAST of Cp4.1LG03g04410 vs. NCBI nr
Match: gi|659123696|ref|XP_008461792.1| (PREDICTED: nuclear localization sequence-binding protein isoform X3 [Cucumis melo])

HSP 1 Score: 1051.2 bits (2717), Expect = 7.7e-304
Identity = 558/681 (81.94%), Postives = 602/681 (88.40%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGSEDRVDDRTFKVDF+GEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP KSSAN  EVPRPKSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSAN--EVPRPKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+ NREW+GIAN+ETRV P+SEVSRVKHSSPEQVP+HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDT 240
            DD QGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVVS SNSDT
Sbjct: 186 PDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASNSDT 245

Query: 241 TNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300
           TNRPRRLQSVAKVPNPMATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTESSG++ 
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRLG 305

Query: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVT V +D+YG++N ++DRPYSATYL RSNY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNI+GHRV DDSWTAESGVRKG NLRTV FR V+NS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
                                          E ELQGT SAVQVTENGEPV +VNQ+K P
Sbjct: 426 -------------------------------ESELQGTRSAVQVTENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQKEFQKPP+SANGQFA++RP+E+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS VT P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KLGARSMQWKRD+QT TADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNS 652

Query: 661 VLSSGARSLTYVRTEPKPADK 681
           + S GARSLTYVRTEPKPADK
Sbjct: 666 IPSPGARSLTYVRTEPKPADK 652

[Close]

BLAST of Cp4.1LG03g04410 vs. NCBI nr
Match: gi|778682815|ref|XP_011651784.1| (PREDICTED: nucleolin 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 1048.1 bits (2709), Expect = 6.6e-303
Identity = 554/681 (81.35%), Postives = 596/681 (87.52%), Query Frame = 1


Query: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGSEDRVDDRTFKVDF+G+GMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP K+SAN  EVP  KSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASAN--EVPTQKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+  REW+GIAN+ETRV PRSEVSRVKHSSPEQVP HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDT 240
            DDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVVS SNSDT
Sbjct: 186 PDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASNSDT 245

Query: 241 TNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300
           TNRPRRLQSVAKVPNPMATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTESSG+ +
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRPS 305

Query: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYG T V +D+YG++N ++DRPYSATYL R NY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNIQGHRV DDSWTAESGVRKG NLRTV FR VENS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
                                       FLQE ELQGT SAVQV ENGEPV +VNQ+K P
Sbjct: 426 ----------------------------FLQESELQGTRSAVQVMENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQ+EFQKPP+SANGQFA +RP+E+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS V  P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KL ARSMQWKRD+QTTTADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNS 656

Query: 661 VLSSGARSLTYVRTEPKPADK 681
           + S GARSLTYVRTEPKP DK
Sbjct: 666 IPSPGARSLTYVRTEPKPVDK 656

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAB2B_XENLA	7.1e-15	34.71	Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b PE=2 SV=1	[more]
PAB2A_XENLA	7.1e-15	34.71	Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1	[more]
PABP2_XENTR	7.1e-15	34.71	Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1	[more]
PABP2_MOUSE	7.9e-14	31.41	Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=1 SV=3	[more]
PABP2_HUMAN	1.3e-13	30.14	Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3	[more]

BLAST of Cp4.1LG03g04410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9I7_CUCSA	0.0e+00	85.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697930 PE=4 SV=1	[more]
F6HBB3_VITVI	6.8e-190	57.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01190 PE=4 SV=...	[more]
A0A0B0MI11_GOSAR	8.9e-182	54.29	Polyadenylate-binding 2-A OS=Gossypium arboreum GN=F383_19189 PE=4 SV=1	[more]
A0A0D2MT63_GOSRA	7.8e-178	54.27	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1	[more]
A0A0D2QYN9_GOSRA	1.4e-174	53.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G036800 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g04410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12640.1	1.7e-115	42.82	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	3.5e-12	38.57	polyadenylate-binding protein 1	[more]
AT2G24350.1	4.6e-12	37.40	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	1.3e-11	28.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	1.5e-10	31.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG03g04410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123692\|ref\|XP_008461790.1\|	0.0e+00	86.20	PREDICTED: nuclear localization sequence-binding protein isoform X1 [Cucumis mel...	[more]
gi\|778682812\|ref\|XP_011651783.1\|	0.0e+00	85.17	PREDICTED: nucleolin 1 isoform X1 [Cucumis sativus]	[more]
gi\|659123694\|ref\|XP_008461791.1\|	4.9e-306	82.38	PREDICTED: nuclear localization sequence-binding protein isoform X2 [Cucumis mel...	[more]
gi\|659123696\|ref\|XP_008461792.1\|	7.7e-304	81.94	PREDICTED: nuclear localization sequence-binding protein isoform X3 [Cucumis mel...	[more]
gi\|778682815\|ref\|XP_011651784.1\|	6.6e-303	81.35	PREDICTED: nucleolin 1 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR002483	PWI_dom
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04410.1	Cp4.1LG03g04410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 512..580 score: 7.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 511..583 score: 1.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 510..587 score: 17
IPR002483	PWI domain	GENE3D	G3DSA:1.20.1390.10		coord: 13..86 score: 3.
IPR002483	PWI domain	PFAM	PF01480	PWI	coord: 24..86 score: 2.
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 509..586 score: 2.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 502..587 score: 1.75
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 509..591 score: 2.0E-51coord: 99..106 score: 2.0E-51coord: 3..48 score: 2.0
None	No IPR available	PANTHER	PTHR24012:SF369	SUBFAMILY NOT NAMED	coord: 509..591 score: 2.0E-51coord: 3..48 score: 2.0E-51coord: 99..106 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g04410	Cucsa.195110	Cucumber (Gy14) v1	cgycpeB0550
Cp4.1LG03g04410	CmaCh14G010130	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g04410	CmaCh01G002220	Cucurbita maxima (Rimu)	cmacpeB494
Cp4.1LG03g04410	CmoCh01G002330	Cucurbita moschata (Rifu)	cmocpeB453
Cp4.1LG03g04410	CmoCh14G010290	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g04410	Cla017260	Watermelon (97103) v1	cpewmB595
Cp4.1LG03g04410	Csa3G697930	Cucumber (Chinese Long) v2	cpecuB599
Cp4.1LG03g04410	MELO3C023966	Melon (DHL92) v3.5.1	cpemeB566
Cp4.1LG03g04410	ClCG10G012470	Watermelon (Charleston Gray)	cpewcgB544
Cp4.1LG03g04410	CSPI03G29760	Wild cucumber (PI 183967)	cpecpiB601
Cp4.1LG03g04410	Lsi03G012120	Bottle gourd (USVL1VR-Ls)	cpelsiB500
Cp4.1LG03g04410	MELO3C023966.2	Melon (DHL92) v3.6.1	cpemedB673
Cp4.1LG03g04410	CsaV3_3G032240	Cucumber (Chinese Long) v3	cpecucB0748
Cp4.1LG03g04410	Bhi11G001189	Wax gourd	cpewgoB0742
Cp4.1LG03g04410	CsGy3G027590	Cucumber (Gy14) v2	cgybcpeB396
Cp4.1LG03g04410	Carg11227	Silver-seed gourd	carcpeB1147
Cp4.1LG03g04410	Carg07319	Silver-seed gourd	carcpeB1073

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g04410	Cp4.1LG02g15430	Cucurbita pepo (Zucchini)	cpecpeB449

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g04410	Wax gourd	cpewgoB0822
Cp4.1LG03g04410	Cucurbita pepo (Zucchini)	cpecpeB185
Cp4.1LG03g04410	Cucurbita pepo (Zucchini)	cpecpeB336
Cp4.1LG03g04410	Cucurbita maxima (Rimu)	cmacpeB404
Cp4.1LG03g04410	Cucurbita maxima (Rimu)	cmacpeB927
Cp4.1LG03g04410	Cucurbita moschata (Rifu)	cmocpeB367
Cp4.1LG03g04410	Cucurbita moschata (Rifu)	cmocpeB861
Cp4.1LG03g04410	Wild cucumber (PI 183967)	cpecpiB637
Cp4.1LG03g04410	Cucumber (Chinese Long) v2	cpecuB633
Cp4.1LG03g04410	Bottle gourd (USVL1VR-Ls)	cpelsiB494
Cp4.1LG03g04410	Melon (DHL92) v3.5.1	cpemeB559
Cp4.1LG03g04410	Cucumber (Gy14) v2	cgybcpeB957
Cp4.1LG03g04410	Melon (DHL92) v3.6.1	cpemedB665
Cp4.1LG03g04410	Silver-seed gourd	carcpeB0634
Cp4.1LG03g04410	Cucumber (Chinese Long) v3	cpecucB0789