Cucsa.184430 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.184430
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein translocase secy subunit, putative
Location	scaffold01274 : 154905 .. 155623 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTAACCTGCCAAAAGAGATTTCAGACTATTTAAATAAGATGGGAGCAAGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGTATGTTTTATCATTCAACTTCTGATTTGAAGGACAAAGTCTTTCCTAGCTTGCCATTGTTTTCATATATTGGTCGAGGTTGATTTCCTTTTGACTTTGGATTGTAAATTACAGGAGGGCTACTGTTGAGTTTTTTGGCAACGACATCATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTAAGTGCTAAAATTTATCATTTTCTTATCATTCTTCAGTCATTGAAAAATGCCATGACACTGGTTATCCCTCCACATACACAGTTTTAACCCTGACAATGCAACTAATCGTCGTTGTAAATATTTCCAACAGATTGTTGGGATTTTGATAGAAATACAAATACTGTATCCTCCCATATCAAAATCTGTTAAGAGGAAGATGTGGTAGATTTATCATATTAGTATACTATTCAAAATTTCCAACCTTATTGATGAACTTAAGTTGCTGCATGTTCACTGTTCAGGTTGGTTCCATTATTGAACTCAGAAGATCTTACCAAGCATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAA

mRNA sequence

GCTAACCTGCCAAAAGAGATTTCAGACTATTTAAATAAGATGGGAGCAAGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGAGGGCTACTGTTGAGTTTTTTGGCAACGACATCATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTTGGTTCCATTATTGAACTCAGAAGATCTTACCAAGCATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAA

Coding sequence (CDS)

GCTAACCTGCCAAAAGAGATTTCAGACTATTTAAATAAGATGGGAGCAAGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGAGGGCTACTGTTGAGTTTTTTGGCAACGACATCATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTTGGTTCCATTATTGAACTCAGAAGATCTTACCAAGCATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAA

Protein sequence

ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV*

Homology

[Close]

BLAST of Cucsa.184430 vs. Swiss-Prot
Match: SCY2_ARATH (Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 7.7e-49
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           ANLPKEI+DYLNKMGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLSFLAT S+VLDHYL
Sbjct: 470 ANLPKEIADYLNKMGARIPNIKPGKATIEYLTKIQASTRFWGGLLLSFLATASTVLDHYL 529

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           RS+N GF+IGFTSVLIIVGSIIELRRSY AYNVMPSLS AL+RYGV
Sbjct: 530 RSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMPSLSKALKRYGV 575

[Close]

BLAST of Cucsa.184430 vs. Swiss-Prot
Match: SECY_PYRSA (Protein translocase subunit SecY (Fragment) OS=Pyrenomonas salina GN=secY PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-11
Identity = 34/99 (34.34%), Postives = 58/99 (58.59%), Query Frame = 1


Query: 4   PKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSV 63
           P ++S  L KM + IP ++PGKA+ +YL K      F G L L+F+A   S++++ + S+
Sbjct: 315 PNDVSQNLKKMESSIPGVRPGKATTDYLQKTLNRLTFLGALFLAFIAVVPSIIEN-ITSI 374

Query: 64  NAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALR 103
           +    +G TS+LI+VG  I+  R  Q Y +  +  N ++
Sbjct: 375 STFKGLGATSLLILVGVAIDTSRQIQTYLISRNYENIMK 412

[Close]

BLAST of Cucsa.184430 vs. Swiss-Prot
Match: SECY_ANTSP (Protein translocase subunit SecY OS=Antithamnion sp. GN=secY PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-08
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 4   PKEISDYLNKMGARIPNIKPGKASIEYL-TKIQASTRFWGGLLLSFLATTSSVLDHYLRS 63
           P++I+  L KMGA IPNI+PG  +I+YL T+I   T    G    F  T    + +Y+  
Sbjct: 309 PEDIAKNLKKMGASIPNIRPGSETIKYLNTRINRLTLI--GACFLFTITLFPTITYYIFK 368

Query: 64  VNAGFAIGFTSVLIIVGSIIELRRSYQAY 92
           +N    +G TS+LI+VG  I+  +  Q Y
Sbjct: 369 INTLKGLGATSLLILVGVAIDTAKQIQTY 395

[Close]

BLAST of Cucsa.184430 vs. Swiss-Prot
Match: SECY_ODOSI (Protein translocase subunit SecY OS=Odontella sinensis GN=secY PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-08
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 4   PKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSV 63
           PK++SD L KM   IP I+PG  +  YL ++       G ++L+ LAT  +++   L S+
Sbjct: 328 PKDLSDELQKMAVSIPGIRPGVETTFYLKQVMKRVTLLGAIMLALLATLPNIIQAIL-SL 387

Query: 64  NAGFAIGFTSVLIIVGSIIELRRSYQA 91
           +    +G TS+LI+VG I++L R  ++
Sbjct: 388 SGFTNLGTTSLLILVGVILDLTREMRS 413

[Close]

BLAST of Cucsa.184430 vs. Swiss-Prot
Match: SECY_SYNY3 (Protein translocase subunit SecY OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secY PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-08
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 4   PKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSV 63
           P+++S  L KMG+ IP I+PGK + +YL  +     F G + LSF+AT    ++     V
Sbjct: 343 PEDVSKNLKKMGSSIPGIRPGKKTEQYLEGVLNRLTFLGAIFLSFVATLPIFVEQ-ATGV 402

Query: 64  NAGFAIGFTSVLIIVGSIIELRRSYQAY 92
                +G TS+LI+VG  I+  +  Q Y
Sbjct: 403 TTFQGLGATSLLILVGVAIDTAKQIQTY 429

[Close]

BLAST of Cucsa.184430 vs. TrEMBL
Match: A0A0S3RXV3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G298100 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-48
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 461 ANMPKEIADYLNKMGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYL 520

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R VNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 521 RRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

[Close]

BLAST of Cucsa.184430 vs. TrEMBL
Match: A0A0L9TI59_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan902s000400 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-48
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 461 ANMPKEIADYLNKMGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYL 520

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R VNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 521 RRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

[Close]

BLAST of Cucsa.184430 vs. TrEMBL
Match: V7CYE8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G150500g PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 461 ANMPKEIADYLNKMGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYL 520

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R +NAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 521 RRINAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

[Close]

BLAST of Cucsa.184430 vs. TrEMBL
Match: I1JNT8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G153100 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-48
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYL+K+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 459 ANMPKEIADYLNKMGARIPNIKPGKATIEYLSKVQASTRFWGGLLLSVLATTSSVLDHYL 518

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R VNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 519 RRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 564

[Close]

BLAST of Cucsa.184430 vs. TrEMBL
Match: A0A0B2QI51_GLYSO (Preprotein translocase subunit SCY2, chloroplastic OS=Glycine soja GN=glysoja_033521 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-48
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYL+K+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 300 ANMPKEIADYLNKMGARIPNIKPGKATIEYLSKVQASTRFWGGLLLSVLATTSSVLDHYL 359

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R VNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 360 RRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 405

[Close]

BLAST of Cucsa.184430 vs. TAIR10
Match: AT2G31530.1 (AT2G31530.1 SecY protein transport family protein)

HSP 1 Score: 194.1 bits (492), Expect = 4.3e-50
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           ANLPKEI+DYLNKMGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLSFLAT S+VLDHYL
Sbjct: 470 ANLPKEIADYLNKMGARIPNIKPGKATIEYLTKIQASTRFWGGLLLSFLATASTVLDHYL 529

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           RS+N GF+IGFTSVLIIVGSIIELRRSY AYNVMPSLS AL+RYGV
Sbjct: 530 RSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMPSLSKALKRYGV 575

[Close]

BLAST of Cucsa.184430 vs. NCBI nr
Match: gi|778716195|ref|XP_004140093.2| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 6.3e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL
Sbjct: 473 ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 532

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 533 RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 578

[Close]

BLAST of Cucsa.184430 vs. NCBI nr
Match: gi|659097114|ref|XP_008449450.1| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-50
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           ANLPKEISDYLNKMGARIPNIKPGKASIEYLTK+QASTRFWGGLLLSFLATTSS+LDHYL
Sbjct: 473 ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKVQASTRFWGGLLLSFLATTSSLLDHYL 532

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 533 RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 578

[Close]

BLAST of Cucsa.184430 vs. NCBI nr
Match: gi|950954026|ref|XP_014496320.1| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 461 ANMPKEIADYLNKMGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYL 520

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R VNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 521 RRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

[Close]

BLAST of Cucsa.184430 vs. NCBI nr
Match: gi|920683381|gb|KOM30107.1| (hypothetical protein LR48_Vigan902s000400 [Vigna angularis])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 461 ANMPKEIADYLNKMGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYL 520

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R VNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 521 RRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

[Close]

BLAST of Cucsa.184430 vs. NCBI nr
Match: gi|593798760|ref|XP_007162418.1| (hypothetical protein PHAVU_001G150500g [Phaseolus vulgaris])

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-48
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   ANLPKEISDYLNKMGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYL 60
           AN+PKEI+DYLNKMGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYL
Sbjct: 461 ANMPKEIADYLNKMGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYL 520

Query: 61  RSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 107
           R +NAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 521 RRINAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

The following BLAST results are available for this feature:

BLAST of Cucsa.184430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SCY2_ARATH	7.7e-49	90.57	Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SC...	[more]
SECY_PYRSA	6.4e-11	34.34	Protein translocase subunit SecY (Fragment) OS=Pyrenomonas salina GN=secY PE=3 S...	[more]
SECY_ANTSP	3.9e-08	38.20	Protein translocase subunit SecY OS=Antithamnion sp. GN=secY PE=3 SV=1	[more]
SECY_ODOSI	3.9e-08	35.63	Protein translocase subunit SecY OS=Odontella sinensis GN=secY PE=3 SV=1	[more]
SECY_SYNY3	5.0e-08	36.36	Protein translocase subunit SecY OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of Cucsa.184430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3RXV3_PHAAN	1.2e-48	94.34	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G298100 PE=...	[more]
A0A0L9TI59_PHAAN	1.2e-48	94.34	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan902s000400 PE=3 SV=1	[more]
V7CYE8_PHAVU	1.6e-48	93.40	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G150500g PE=3 SV=1	[more]
I1JNT8_SOYBN	3.5e-48	93.40	Uncharacterized protein OS=Glycine max GN=GLYMA_03G153100 PE=3 SV=1	[more]
A0A0B2QI51_GLYSO	3.5e-48	93.40	Preprotein translocase subunit SCY2, chloroplastic OS=Glycine soja GN=glysoja_03...	[more]

BLAST of Cucsa.184430 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31530.1	4.3e-50	90.57	SecY protein transport family protein	[more]

BLAST of Cucsa.184430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716195\|ref\|XP_004140093.2\|	6.3e-51	100.00	PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus]	[more]
gi\|659097114\|ref\|XP_008449450.1\|	1.8e-50	98.11	PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo]	[more]
gi\|950954026\|ref\|XP_014496320.1\|	1.7e-48	94.34	PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Vigna radiata var...	[more]
gi\|920683381\|gb\|KOM30107.1\|	1.7e-48	94.34	hypothetical protein LR48_Vigan902s000400 [Vigna angularis]	[more]
gi\|593798760\|ref\|XP_007162418.1\|	2.2e-48	93.40	hypothetical protein PHAVU_001G150500g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002208	SecY/SEC61-alpha
IPR023201	SecY_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0015031	protein transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.184430.1	Cucsa.184430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002208	SecY/SEC61-alpha family	PANTHER	PTHR10906	SECY/SEC61-ALPHA FAMILY MEMBER	coord: 2..106 score: 4.0
IPR002208	SecY/SEC61-alpha family	PFAM	PF00344	SecY	coord: 4..84 score: 4.0
IPR023201	SecY subunit domain	GENE3D	G3DSA:1.10.3370.10		coord: 4..104 score: 5.0
IPR023201	SecY subunit domain	unknown	SSF103491	Preprotein translocase SecY subunit	coord: 4..91 score: 2.22
None	No IPR available	PANTHER	PTHR10906:SF2	PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC	coord: 2..106 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.184430	Csa6G410010	Cucumber (Chinese Long) v2	cgycuB282
Cucsa.184430	MELO3C014403	Melon (DHL92) v3.5.1	cgymeB332
Cucsa.184430	ClCG07G000230	Watermelon (Charleston Gray)	cgywcgB334
Cucsa.184430	CSPI06G21990	Wild cucumber (PI 183967)	cgycpiB292
Cucsa.184430	CmaCh19G000470	Cucurbita maxima (Rimu)	cgycmaB0527
Cucsa.184430	CmoCh19G000440	Cucurbita moschata (Rifu)	cgycmoB0529
Cucsa.184430	Lsi05G009280	Bottle gourd (USVL1VR-Ls)	cgylsiB312
Cucsa.184430	Cp4.1LG15g00260	Cucurbita pepo (Zucchini)	cgycpeB0507
Cucsa.184430	MELO3C014403.2	Melon (DHL92) v3.6.1	cgymedB327
Cucsa.184430	CsaV3_6G037090	Cucumber (Chinese Long) v3	cgycucB297
Cucsa.184430	Cla97C07G128500	Watermelon (97103) v2	cgywmbB335
Cucsa.184430	Bhi05G000250	Wax gourd	cgywgoB380
Cucsa.184430	Carg16846	Silver-seed gourd	carcgyB0845

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.184430	Cucurbita maxima (Rimu)	cgycmaB0525
Cucsa.184430	Cucurbita maxima (Rimu)	cgycmaB0532
Cucsa.184430	Cucurbita moschata (Rifu)	cgycmoB0527
Cucsa.184430	Cucurbita moschata (Rifu)	cgycmoB0534
Cucsa.184430	Watermelon (97103) v1	cgywmB354
Cucsa.184430	Cucurbita pepo (Zucchini)	cgycpeB0505
Cucsa.184430	Cucurbita pepo (Zucchini)	cgycpeB0514
Cucsa.184430	Silver-seed gourd	carcgyB0844