CSPI06G21990 (gene) Wild cucumber (PI 183967)

NameCSPI06G21990
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPreprotein translocase subunit secY
LocationChr6 : 19934985 .. 19936173 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATATAACTATGTAAATTGAATTTGTTAGTCCACTCTCACATGTTCCTTTACCTTTCCAGGCTAACCTGCCAAAAGAGATTTCAGACTATTTAAATAAGATGGGAGCAAGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGTATGTTTTATCATTCAACTTCTGATTTGAAGGACAAAGTCTTTCCTAGCTTGCCATTGTTTTCATATATTGGTCGAGGTTGATTTCCTTTTGACTTTGGATTGTAAATTACAGGAGGGCTACTGTTGAGTTTTTTGGCAACGACATCATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTAAGTGCTAAAATTTATCATTTTCTTATCATTCTTCAGTCATTGAAAAATGCCATGACACTGGTTATCCCTCCACATACACAGTTTTAACCCTGACAATGCAACTAATCGTCGTTGTAAATATTTCCAACAGATTGTTGGGATTTTGATAGAAATACAAATACTGTATCCTCCCATATCAAAATCTGTTAAGAGGAAGATGTGGTAGATTTATCATATTAGTATACTATTCAAAATTTCCAACCTTATTGATGAACTTAAGTTGCTGCATGTTCACTGTTCAGGTTGGTTCCATTATTGAACTCAGAAGATCTTACCAAGCATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAACAAGTTCAAATGATGCTCCTAGTGGTTCTGTATTTGTGCCTCAAAAGTATCCAATAATCTCTTTCAAGTATAATTGTCTGATTCCTCCTGGCTCGTAGCTGGACTAGAACAGAGCCTTTCATCCCTTCCTCAATTCTTTTTTAGTGCTGAGGACTGCAGAGTTTCAGAATAGTGGCCATCCATAACAATGTATACCCACACAAGTACCAAGAAAATTTTGATCCTCTGGTCTTTGAAACATCTAGCGAACAAGGGACACAAGCATTGGAATGTTAAAGATGCTAATCACGAGTGTAGCTGCAAGATCTTATTCTTGAGCCTAATTTTGACCATTTTCTCCCTATTTTGTATATATAAATTCTGTAATATGAATCTTAACATATTTATTAGATTATAGGTACATCGGTG

mRNA sequence

ATGGGAGCAAGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGAGGGCTACTGTTGAGTTTTTTGGCAACGACATCATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTTGGTTCCATTATTGAACTCAGAAGATCTTACCAAGCATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAA

Coding sequence (CDS)

ATGGGAGCAAGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGAGGGCTACTGTTGAGTTTTTTGGCAACGACATCATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTTGGTTCCATTATTGAACTCAGAAGATCTTACCAAGCATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAA
BLAST of CSPI06G21990 vs. Swiss-Prot
Match: SCY2_ARATH (Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-41
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLSFLAT S+VLDHYLRS+N GF+IGFTS
Sbjct: 483 MGARIPNIKPGKATIEYLTKIQASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTS 542

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSY AYNVMPSLS AL+RYGV
Sbjct: 543 VLIIVGSIIELRRSYHAYNVMPSLSKALKRYGV 575

BLAST of CSPI06G21990 vs. Swiss-Prot
Match: SECY_PYRSA (Protein translocase subunit SecY (Fragment) OS=Pyrenomonas salina GN=secY PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-08
Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           M + IP ++PGKA+ +YL K      F G L L+F+A   S++++ + S++    +G TS
Sbjct: 325 MESSIPGVRPGKATTDYLQKTLNRLTFLGALFLAFIAVVPSIIEN-ITSISTFKGLGATS 384

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALR 90
           +LI+VG  I+  R  Q Y +  +  N ++
Sbjct: 385 LLILVGVAIDTSRQIQTYLISRNYENIMK 412

BLAST of CSPI06G21990 vs. TrEMBL
Match: A0A0A0KDV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410010 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
          MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS
Sbjct: 1  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60

Query: 61 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
          VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 61 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 93

BLAST of CSPI06G21990 vs. TrEMBL
Match: A0A0S3RXV3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G298100 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYLR VNAGFAIGFTS
Sbjct: 474 MGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYLRRVNAGFAIGFTS 533

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 534 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

BLAST of CSPI06G21990 vs. TrEMBL
Match: A0A0L9TI59_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan902s000400 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYLR VNAGFAIGFTS
Sbjct: 474 MGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYLRRVNAGFAIGFTS 533

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 534 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

BLAST of CSPI06G21990 vs. TrEMBL
Match: V7CYE8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G150500g PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-41
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYLR +NAGFAIGFTS
Sbjct: 474 MGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYLRRINAGFAIGFTS 533

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 534 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

BLAST of CSPI06G21990 vs. TrEMBL
Match: I1JNT8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G153100 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.7e-41
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYL+K+QASTRFWGGLLLS LATTSSVLDHYLR VNAGFAIGFTS
Sbjct: 472 MGARIPNIKPGKATIEYLSKVQASTRFWGGLLLSVLATTSSVLDHYLRRVNAGFAIGFTS 531

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 532 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 564

BLAST of CSPI06G21990 vs. TAIR10
Match: AT2G31530.1 (AT2G31530.1 SecY protein transport family protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.0e-42
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLSFLAT S+VLDHYLRS+N GF+IGFTS
Sbjct: 483 MGARIPNIKPGKATIEYLTKIQASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTS 542

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSY AYNVMPSLS AL+RYGV
Sbjct: 543 VLIIVGSIIELRRSYHAYNVMPSLSKALKRYGV 575

BLAST of CSPI06G21990 vs. NCBI nr
Match: gi|778716195|ref|XP_004140093.2| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.3e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS
Sbjct: 486 MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 545

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 546 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 578

BLAST of CSPI06G21990 vs. NCBI nr
Match: gi|700192691|gb|KGN47895.1| (hypothetical protein Csa_6G410010 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.3e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
          MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS
Sbjct: 1  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60

Query: 61 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
          VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 61 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 93

BLAST of CSPI06G21990 vs. NCBI nr
Match: gi|659097114|ref|XP_008449450.1| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 9.5e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKASIEYLTK+QASTRFWGGLLLSFLATTSS+LDHYLRSVNAGFAIGFTS
Sbjct: 486 MGARIPNIKPGKASIEYLTKVQASTRFWGGLLLSFLATTSSLLDHYLRSVNAGFAIGFTS 545

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 546 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 578

BLAST of CSPI06G21990 vs. NCBI nr
Match: gi|950954026|ref|XP_014496320.1| (PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-41
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYLR VNAGFAIGFTS
Sbjct: 474 MGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYLRRVNAGFAIGFTS 533

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 534 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

BLAST of CSPI06G21990 vs. NCBI nr
Match: gi|920683381|gb|KOM30107.1| (hypothetical protein LR48_Vigan902s000400 [Vigna angularis])

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-41
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1   MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTS 60
           MGARIPNIKPGKA+IEYLTK+QASTRFWGGLLLS LATTSSVLDHYLR VNAGFAIGFTS
Sbjct: 474 MGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYLRRVNAGFAIGFTS 533

Query: 61  VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 94
           VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Sbjct: 534 VLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 566

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SCY2_ARATH1.8e-4190.32Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SC... [more]
SECY_PYRSA2.6e-0833.71Protein translocase subunit SecY (Fragment) OS=Pyrenomonas salina GN=secY PE=3 S... [more]
Match NameE-valueIdentityDescription
A0A0A0KDV7_CUCSA2.3e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410010 PE=3 SV=1[more]
A0A0S3RXV3_PHAAN1.6e-4195.70Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G298100 PE=... [more]
A0A0L9TI59_PHAAN1.6e-4195.70Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan902s000400 PE=3 SV=1[more]
V7CYE8_PHAVU2.1e-4194.62Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G150500g PE=3 SV=1[more]
I1JNT8_SOYBN4.7e-4194.62Uncharacterized protein OS=Glycine max GN=GLYMA_03G153100 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G31530.11.0e-4290.32 SecY protein transport family protein[more]
Match NameE-valueIdentityDescription
gi|778716195|ref|XP_004140093.2|3.3e-43100.00PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus][more]
gi|700192691|gb|KGN47895.1|3.3e-43100.00hypothetical protein Csa_6G410010 [Cucumis sativus][more]
gi|659097114|ref|XP_008449450.1|9.5e-4397.85PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo][more]
gi|950954026|ref|XP_014496320.1|2.3e-4195.70PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Vigna radiata var... [more]
gi|920683381|gb|KOM30107.1|2.3e-4195.70hypothetical protein LR48_Vigan902s000400 [Vigna angularis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002208SecY/SEC61-alpha
IPR023201SecY_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0015031 protein transport
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
cellular_component GO:0016020 membrane
cellular_component GO:0009526 plastid envelope
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G21990.1CSPI06G21990.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002208SecY/SEC61-alpha familyPANTHERPTHR10906SECY/SEC61-ALPHA FAMILY MEMBERcoord: 1..93
score: 6.1
IPR002208SecY/SEC61-alpha familyPFAMPF00344SecYcoord: 2..71
score: 3.7
IPR023201SecY subunit domainGENE3DG3DSA:1.10.3370.10coord: 1..91
score: 3.5
IPR023201SecY subunit domainunknownSSF103491Preprotein translocase SecY subunitcoord: 1..78
score: 2.88
NoneNo IPR availablePANTHERPTHR10906:SF2PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTICcoord: 1..93
score: 6.1