Cucsa.178970 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178970
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nuclear speckle splicing regulatory 1
Location	scaffold01227 : 1365272 .. 1377775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGCAATTCGAGTCCTTCTTCGTCGTAAAAGTCGAGTAGATCCCTCTTCTCAAAATTTCTCTCGCCGACCTCCGCCATCTCTCTATATTCCTCCACCGCCACACATCGGCGACTGCCAATTGCACCGCCGCTAGCTCTCTCCGCGCGCGGGATCGAAGTTGCTAGCCGATTTGTGTGGTACTTTGTCCCTTCTCCGATCTGCCACTGTCTGCCTATTGGAAGTCGTTCACCAACTTCTGGCCGTCAGATTTTGTTCGTCTTGCAATCTGCCGCTTGGACCACAGTCACGCTACTCCCGAGATTTGTTTCGAGCTAGTTGCCCTGTCTGTCCGTGCGTTGATTGAGCCTCCGGTGTACTGGTGAGTGCCGAATATCCGTTGTCTTATGATGCATTGTCGCTGAAAAATTTCATTGTTTTAGTTCATTTCCTATAAATATTTGGAATACCCATTAAGTTTAGACTTGAGTTTAGCAATACCCATTACATTTTAGTGTTATCTTTGAATTTTGGAAGAGATTGAGTTGCGGTCCAGTCATTTGGAAGCTCGAAATTGGGCGTTTGGACACAAATTAGGTAAGAATCTAAACTTTATTGAGCGGGTCTTGAGTATCCATTGAGTTTTGACGCTATTATTGAACAAACCCATAGTTTTTGGATGCTAGGATTCGATAGTTGAAGGCCGTTAGAGAATTGTCCTTTGAAACTAAGGTTACTTTTTtAAGTACTTGTAAGTTTTGGAGTAATTTCATTGAGTTTTCTTGAAGTTCTCGAATGCCCATTAAGTTTAAGCATTTAGATAAAATTAGGCATGCTACTCGGATCCTTGAGTTGAATGTTAAAGGTTGAAAGTGGACTTTCCATTAACTTTGGGGTTTGCTTGGGTGTTCTTCTATAATCTTTGAAACATAAAATGGTTTTAGGTACTAGATTCGAATTTAGAAAGCCGTTAATGTGCTTTTATAATCTTCAAAACATAAAATGGTTTTAGGTACTAGATTCAAATTTAGAAAGCCATTAATATGCTGTCAAGGCGATTTCGACAAGGTATCGATAAGGTTTTAGGTAAATTTAGTGAGCTTTCCTATAGTTCTTGAATAGCCATTTAGTTTTAGCATGAACTTGATATTGCCCATATAACCATATTGTTTTGTATGAGAGATTGAAGATTTGGAGAACTTGGAAGTATTGATCAACACGTTTAAGGTTGTTAATATTTTCAAACCTGAAACTTAGAAAAACCTCAACAATAGCACAAGACAGAGGGAGCACTCTGTGGAAATATATTGATATCCAAAAACAGTGTTCGACAAACAACCAGTAAGCAACTACGAGCAAGAAATAACATAATACTATAAGAAAATATCCCATCTCCTAAGAGAAGGCTGGAAGCTTCTCCCGAAAAGCTATACAACAACTTTAAACCCAATCAATACCTAAAAACCCATTCACCAAAACATTCTCTATTTATACTCCCTTCACAGTGGGCCCTAAAAGCTATACCGCTCGGCTCGAATTGCACCTTGTTCTCAAGGTGGAAGGACGGAAACTGCTGCTTCATTTCGGTTACCCTCTAATTCCCTATACAGATTCTGGCTTAAGTTGTAATTCAAACTTCTTGGTCAGGGCTGGAAATTGATGTTGCACCAGCTGGTTATGCCTCAACTTGAGTTTCAGTTGTGATATATGGAAAACATCGTGAATGCTAGCTTTTGGTGGTAATCCTGACGATAAGCAACTTCTCCAATCCTTTCTATGATCCGGTATGGCCCAAAAAATTTGGGTGAGAGTTTCTCATTTCTTTTTCTTGCTAAGGATCTTTGCTGGTATGGTCTCAACTTCAAATACACCCATCCCTCTGCTGAAAATTCAAATCTCTTCTTCTTAAATCAACTTGCTTTTTCATTCGGTTTAGAGCAATAGCTAGGTTTTCTTTAAAAGCATTGAAGGTCTGATCCCTCTCTTGTAGCAGTTGGTCAACACTGTTGTTGGAGGTTTTCTTTTCCCCATAAGACAGAATAGGGGGTGGCGGTCTACCATAAACAACTTGGTACGAAGTGGTTTTCAAGGAGGCATGAAATGTAGTGTTGTACCGAAGTTCAGACCACAGAATACATTTATTCCACTTGGTCGGTTGTTCATTGCAAAAGCATCTTAAATATGTCTTGAGGCATCTATTTACTCTCTTGGTTTGCCCATCTGTTTGAGGATGGAATGCCGTGCTCCTTTTTAGCATCGTTCCATGGCTGTAAATAGTTCTTTCCAGAAGTTACTCAAGAAAATTGCATCTCTATCCCTGACAATTGTTTTAGGAATGCCATGTCTACTTACAATATTTTCAATGAATGCTTCTGCCATTTGTTTTGCTGTGAATGGGTGTTTCAACATGAGGAAATTTCCAAACTTACTCAATCGGTCTACCACCACCTTGATAGAGTCATACCCGCCTGCCTTGGACAGTTCTTCAATAAAATCCATGGTCCAGTTTTCTAAAATTAGCTCGGGTATGGGCAAAGGTTGCAGTAGGCCTGCTGGGGACCACGCTTTTGTTTtATTTCTCTGGTAGATTTCACATCCCTCAACATAATTCTTCACATCTGTTTTCATTCCCATCTAGTGCAGCTCTCTGCTCATTCTTTTATATGTTCTCACCAAATCCGAGTGTTCTCCCATTATAAAGTCATGAAACATGTGCAGCAAGGATGGGATGAGGAATGAAGTTTTTGGTAATACCTACCTTCCTTTATAGCGTAATTGTCCATTAATCCATTTGTAATTCGGCTTCCCATTTGGCTCCCTCTTTAATTCCTCTATAATTTTCTGCAATTCTCCATCTTCCTCAACTTCTTTCATGATCATCTCCACATCAACTATTCCTGGGGCTGTTGAAACCATTATTTCAGTTGGCTGGTTTATTCGAGATAATGCATCCGCTGCCTTATTTTGTACACTGAGCTGATATAATATTTCGAAGTCATACTCCAAAAGCTTCATCAACCACTTCTGAAATTGAGGTTGGACTTTCCTTTGATCAATTAGGAATTTAAGTGCCTTTTGTTCCGATATCACTGTAAATTTTCTGCCCAATAAATAGTGTCTCCATTTTTGCACAGCTAACACCACAACCATGTGTTCTCTTTCGACGACTGATTTAGTTTGGGCCCGCGAAGATAATTTTTGGCTGAAGAAGGCTATCGACCTTGACTTCTGTGTTAGGACAGCCCTCAATCCATACCCAGATGCATCAGTTTCAACCAAAAaGGGAAGGGCGAAATTTGGAAGTGCCAAAACTAGAACTGAAATCATAGCCCCATTCATTGTTTCAAAAGCCGTGGTAGATTCTTCACTCCAAGTGAAGTCATTCTTTTGCAATAACTTGGCTAGAGGTGTCGTAATGTCCCCATAATTTTTCATGAATCTCCTGTAATATCCAATTAGCCCCAAAAATCCCCATTTCTCCATTGCCAGGATTTTCTCCCCATCAGCCTCCACACCTTGGCTTGATATCCCATGCCCTAAATATTGTATTCTTGAGTGTCCGATTACAAATTTCTTCTGCTTGGCATAGAGCTCATTGTCACTCAAAATATTGAACACTTCCCTCAAATGCTTCTCATGTTTTATAATGGCAGAGTTGTAAACTAAAATATCGTAAAAAAATACCAGCACAAAACGATGAAGGAATCGGTAGAAGACTTGATTCATTAACGATTGAAAAGTAGCGGGCGCATTCGTCAATCCAAATGGCATTACTAGGAATTTGTAGTGCCTCTCATGAGTCGGAAAGGTTGTCTTCTCTATGTCATCTTCCCTCATTTTGATTTAATGATATCCGAATTTGAGGTCGAGCTTTGAAAACACTGTTGCCCCATGTAACTCGTCTAACAATTATTCTATTACTGGAATGGGAAACTTATCTGTTGTGGATATTAATCACGCGTGAGCTATTATCGGCCATGTATTTAGTATTCTACCATGGTTGGGTGGATGAAGGCTGCTATTGTGGCAGGTACTAAATATGCGTGAGCTCAGTTTGGCTGCATGATTCCTTAATCATGTGCGAGCTATTTTCATCCATATATTTAGGCGCTATGCTATGGTAGACCCTTACATGGTACAAGTTCGTTGGCGAATACTTGTGATTTATAGTAATACGTGTTTATAACGTTTTAATTATTACTTCGTTATCGATTCCATATTTAAACATTCTTGAGAGCATGTTTTATGATTTTTTACTTCTAAAAACTTGCCACTCACTGAGGTTGAGATCCTCGTCATCGACTGTAGATTCTCGTTTTCTTTTGTATGTATATACTTAAGTTTTGTAGTGCATCATGGGTGGTTAGAAGTAGTGAGAGTCATGCTACGGACATGTGTTTTGAGAGATCTCTTAGCAGACTATAATTCTTTTGTAACTAAATTCCTAGTTGGATATAAACTCTGATTGAGACTCTAGATTAGTTTGGATGAGAGTGTGGTGAGACATCAATGTTATTTTGAGTCTGAAGAATATATATATATATATAGAAGTGTAATTTTCTATTTTCTTCtCTTTTTAGGTATGGCTAACCCAtATTTTTAGGGAAGATGCTATCAAAATTTCTATAGAATTTTAGGTTGGAAAATGTTGTTTTTAAAAAGTGTTTTCATGCCACAATCTAGGCTAGAGGGAAAAAACTAAACGGGGTGTGAAAATTTGGTATAAGAGCATAGCATGGTTTTGGAAAACCTAAGGGTTATGAGCAAAAGTTTTGGAAATCTAAAGGTTTTGCATTATATAGTCAGCATGAGTAGGTTGCTTGGAAACATGCCCATTTTGGTACACGACCTAGACATCCTATAGAGAGAACTTGTGACACTCCTTTAGTTTAGACGTGGGACTGAGGAATTTGAAGTTGAAGCCAACTGTGTTGAGAAGAACTTTGATGAACGGATGATACCTTGTTTGGCTCAAGAAATTGTCGTCGGTATGAGAGTTATGCACAAGATAATCCCACGAGAACTTCAAAATTAAGTGTGAAGGCTTTGAGAGCAACAATATTTTTtAGAAaCAACTAATCCCAAAAATGTAGAATATTGGTTGGAGATAGTAGAGAAATGTTTGGGTCCATGAGTTGTCCAAATGAAAGTAAGGCAAGACTTGCCACTCTCTAGTTGTAGAGAGGAGCATAGAACTGGTAGCGCTTCCCTAAGTTATGCTCAATGGTAGATCAATTAGTTAGAAAGAATCCTAATGAGTTATTCATAAAAAACCTTATCAGTGGTCATTCCAAGAGGCGAAGCGAAATGAATTTTGGAAGCTTCAAAAGGAAATTATGTTTATGGCAAAATATAAAAAGCACACCAAATTGTCCAAGTATGCTATTTTAGTTATACAAGACGAGGTGAACATATGAAAAAGTTTTAAGGATACTTTAAGAAAGGAGATTCATATGCTATTACTGTTAGCACTGAATGGATGGTGTTGTTAAACATATAAATACTGCTATACAAGTTGCAAAGAACTTGTTTGAGAAGAATGCTGAGAAATAAATCTTAAGGCCTTGGCAATCTAGTAGTCCAAGAAGGGTAAATATCTCCATATGGATTATGCTGTTTGGAAAATTAAACTGTGCTTCAGTACTTCAAAGTAAGCTTCCCTCCTTTTTCCTATCACCTCATGCCTGCCCCCTTTGTGTTGGTAACATGGAAAAGATTCATTACCTTTTATTtGTCTGTGTCTTTGCATCTAAATGTTGGTTTCGGCTTCTCCAAGCATTCAACGTTTGTTGGGCTTTTGATCACGATTTTAAGAACAACGTGACTCAAGTTCTTGCTGGTCTAGCCTTGAAGATGAAGACAACTGATTTATTGCGAGTAAATGCAGTAAAAGCTCTCTTAGTTGAAATATGGTTTGAAAGAAATCAAAGAGTTTTCCATGATAAACCATCAACTTGGATGGAACGTTTTGAATCTGTTTATTTGAATGCATCTTCATGGTGTTCTCTGTCCAAAGATTTTCAGGATTACTCTTCGCAGGATATTGTGTTAAATTGGCCAGTCTTTATAGCCTCCCCGACTTGAAGTTCTTGATCATCAGGACTTCCGGATCAGCCCTTTGCTTCAAACAATTTTTTGCTCAATCAATCAAGGCTTATTTTtCTTATTCTTGGCCTGCTGCCTATGATTTATGATTTTGCTTTGGACAAATTATTTTATTATTTTGTTTGGCTTTGTATTTGTGGCTTTTTTTtATCTTGTATTGTCGCTTTTTGGATGTGATGAGGGCGCTAAGGGGGTGTCAATCTAGTTGAGATGCCCAGGTGTGCCTGCTGATCCGCCCTCCCCCTATTGCTCTTTGTATATCTCTACATTGAGCTTTGTCTCTTTATTTTTCGATACTACTATAGTAAGACTCGTTTCCTTTTAAAAAAAGGGTGCTCGACTAGCTAGTCTTTCGAGCTTATCATATGAAAGATCTAATGGCTGACTTAACCTTGGAGTTTGACGAGTTTATCAGAATAGATTTCTTGTCAACGTATCACACCACTATAGGTTTATACCATAAAGGAGCAAGTGTTTAAGTAACAAGGTGACGTTGAAGTGAGTTCAAAAGCAATGGAAAATTGTCTCGGCTAACCCATATTTTAGGGGAGATGCTACTGAAATTTGTATAGAATTTTAGGTTGATAAATGTTGTTTTCAAAAAGTGTTTCTATGCCACAATCTAGGTTAGAGGGGAAAACCTAGAACAGGGTATGACAATTTAATGAACGAAGACGTAATGAACTATACTCTGATTGTTCAAAATTTTCTTCCTTGAACTTTTTATTAAGTTGATGCATATCAAAGTTTTCAACGGTTGGAGTAATAAATCCTTTGACATGTTACTAGAATGGTCCATCGTTGTCAGTAGTGCTCTCTTTGAGACACCACATTGAAAGAAAGGATTTCTTTAGACATTACAAGGTTGAGGTATCTTCAGCACATTTTCTTCCAGTTTGATATTTTCCAGCTCTAAATTTTTTTtCTGAGTAGATATGCTTTTGATCTATTCCCCAGATATTATTGGTATCTCATGTGTCTGATTTGCTTTTATGTGAACTTCAGGTCAATGACATTGTCTTTTATGATCATGTTGAGATTTAGACTAAGATTCAAATTTTCTCATTTGTTTATATACATTCATATACCCTACTGTACGGAAAATTATAGAACATCAAACCCGATTTTTATTATTTATTCTTTTAATAGGAACTAGTTTTTTtGAGAAAATTAAAGAATAGAAGGGTAACAAAAAGGAAAAAGCCCTTAAAACTACTGTCAAGAAAGAGTTTCCAACTAAATCCTAGGTAGGTGGCATCCATGAATTGAACTCATTCCTCCAAATCCATTGTCATACTCATCGCCCTTATTCACTAGACCAACCCATGAAGTTCACTATTGGCTTTCTGAGTATTTTAAATATTCTACCTTTCAAAAAaTATTCGTTTTCAGGTAACCAaAAAAaCATAGGAGGCACATGACAGGTTGTTTGCTAATTGTGCCATGGAGATTGTACTTGCATTAATTTTGATGTTTTATTAGAACTTTAACATTCTTTTTGTTGGTTAGACCTTCATTGTTTCTAGTTTGTTTGTTTTGAGAATATTAAATCCAAGTTGTTATTTCATTTCTGATTTATTTGGGATCCCAACAGGAAGGTACTCTATTTTGTGTTGGGATTGTTCCCAAAATACTCCTTCTTTGAGGGAACAAAGTTAAAATTTTATTTTCACTTTGGTTAGAGGACTTAGGAAATTGGGTCATTATGTAATCTATTTTTGAAGAGCATTGGGATTGGGGTATAATATGGAAGCATTTGTGTATGCAGTATGCATCAATGAGCTGCATTTTAATTTTTACAGGAACAGTTAGAAGACAGTAAAATGAGCAAGTATGGCCTGCAGCTTAGGGTTAAGCCATCGCAGCAGAAGCAGCCTACAAGACCACCCCTTCCTGCTCCTCTTGGATTTCAAGATGATGACGATGACGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGCGCTTAAGGATGTAAGTTAGCTTGTCTATGACTAATTTTTCCTATGTGTGTTGGTACCTTTTCCTTTACAGGTATTTATTGAACAAAGATAGCGTCATAGCAAGAATCTCAGGGTTGTATGCTAGACTTATTTTATCTTCCCCCCTTGAAAATCAAATCAGATTGAGGAGCAACATAAGAAAGCACTAGAGGAGGATCCATCTGTCTTTGACTATGATGGAGTTTATGATGAAATGAAAGAAAAGGTTGTTCAACCTCGAGCATATGATCGTGAAGAGCGAAAGGTATGTTCACAATTTGATTCAGGAACTTGCTTGGTTCCTTTGTTACTATTGCAGATTTCTTCTCTAAGGTATTGTTTTATTATTATTTCTTTTGAGAGATTTCAAGGTTTTATTTAATCATTAAAAaTTTATTTTtCTTAAATTTCAATTTAGCAATTTTACTTCCAAAGGGTTTTAGGATTTGGCTGTTGCAGCTGTGAGCTCTATAACTTTACCAATGGTTGGGCCTTGGTATTATAAGTTTTATGGCTCTGTTTGAGATTGGAAGTTGTTAAATCGTTCAATAATCAAAATCTTTGAAACATGCCTAaAAAAACAAGAAGAAAAATTGAACTAGATATTATATTGTACCAACTAGAAGTACTATATATGTATCTACATTTCACCTAGAGTTGTGGACTTCAGTTGAAACATTGAAACACAAATCAATTGAACTAGATGTGTCTTCGAATCCTTCTAGGTTTGAGCTAGAACTTATAATTTTTTTtAAAAaAaTATATATGATATTTCTAGAATTAGGAACTGACGAAACCAGTGCTTCATCTTACAAAaGAAAAAAATTTATCTGTTAGGATCCTCCACCTGAAAATCAGTAAAATCCCAACAAATACAGAAACAGAGGCAGCACTCTGTGATATCTATATATTGATAACCCAAAATATGATGTCCACAAGAGATTCAAAAGACATGAAAATGACAATGGAAATAAAGACAAGTCCAACTCCTTGGAGATGACTGGAAACCTCTCCCTCTAAAAGCTTCAACAACCTTTACTACAAAATACCTATCTGCACTGATATCTAAACATTCTATTTATACCTCTCGTTATTCGCGGGTTCCATCTGGTATATTGTTTTCCCCAATCCCTTCTCCTTGGCTTGACGTAAGGTTAAATACCTTTTTGCCCTTGCGTTCGTATTTGTGAATAATTGGGGGTCTAACAATATCATTCTAAAACTTAATGAAACATAAAAATGATATCTTAAATGAAATTGAATATGTATAAAATTACAATATTACCCTAATCTAATGCTTCCATTCGAGAAAACACTTATGGTATCCCTGCCTTATTATTGCAGCCAAAGTATATTCAAAATTTGATGAAAAAGGCACAAGAGAGAGAGAGAGAGCAGGAGATTATATATGAAAGAAAACTGGCCAAGGAGAGAAGCAAAGATGATCATCTCTATGCTGGTAAGGATAAATTTGTCACCGGTGCCTACAAAAaGAAACTTGCAGAACAAGCAAAATGGATGGAGGAAGAGCGCCTTCGACAACTTCGGGAGGAGAAAGAGGATGTATGTATTGTTTTCATTTTCCTCCTTGTGCATTTTTTATTTTCATTTATAATTTTATAAATTCTTATTATTTGTGGAATGTCTTCTATAGTGATATAATGAGCGAGTGCAAGCACTTTGTATATATTATTAGAACTGTAAGTTTTTTCATATTTTCCTTGTTGCAGAAGAAACCAACCTTTCATTGAGAAAAAAaTGAAAAAAaTACAAAGAGGTCAACAAGAGAAAAAaCAAAAAaTTCTCAAAAAGAGAAGTCCCCTTGAAGAAAGGGACTCCAATTTAAGGAAAAAAaGACCAGAAATATAACTACAATGTCTTCAGGACCAAACTTCAAAGAGGAACATTGAATCGAAACAAAAGTCCAAACATCCCATTAGTCCCTCATGACTCTTAACTTTTTATTCTTATTTTTTCCCATAAACTCCAAGAAGCACGACTTTCCACAAAGATGTCCCACTCTAATGAAAAGATGAATTGAAATTTTCGATAATCTCCGTGATAGGTTTGAAACCCTTAGCCCTGTTTTTCCGCTCCATCGGGCTGGAGCAAACAATTTTGTTCAATCTTGGTTAACCCTTGGAAGGAGTCGAAAAGTCAGGCCCTCACAATTTGAAGGAAAAACAATTTGGGATTAGTTGTCATATGAGCAGTTGCATCGGAGTCTATGACTCATTGTGTAAAGAAGGAAAAGCGACATCAATTCATGTTACCTGAATTAGCAATGTTTTAGGGGCACATGTTAACGATGAAGGAGATGCTTTCAACAATTTAGTTGACAAATCATGGATAGATGGAGCCCGTAATTGAGCCAAATGAGACATCACTGCGGGATCGAAAACCAAGTTCTGAGAAGCTTCTAACCAATGGAACAAAACAGCAACAAATCCGAAGAACCAAAAGAGTATTTTTTtCAAAGACCCTGGCACTTGATTAGATTTTAGTAGAACCAAATACACAGATCATCTGGAAACACAAATGGAGAAAAaCCCAGCCAACAGAGCACAAAACAGATCTCCCACGTGCCAGCGCTGAGGAATTTGCGGCAGATGAAGAGGTGGCGCGTGAGCCTCACATGCTAGTCAGATGGCTTTGAAAATCTGAAGTTTGGTAGATCGGTAGCTGGGCTCCTTTTTTAGCTGGGAGATGTCAAAAAAAAaGAAAACTTCTGGCAGCGGCTGATGGACAACAAACAAACCGATGACGGCAAGGGTGGGCAAAATTGTAAACCCACCCCTCCAAAAAGCCCTAGATGTTATAAAAGGGTTCTAAATTCTCAAACCCTAATTTTCTCTTACGCTTTGATACCATGTTGAAGCTAGTGGAAATATGAAATAGCTCAATTCGTTTTATACAATAGGGTTCAATAGGTAGGCATACATGGAAACCCTAACTAAAGACTAATAAATTACAATAATGAACAAACGACTGATAAGCTCCTATATATATATTATAGCACTTTATATGTTGAATTTGGATTTACCAGTCCCCACTTATAGTTTGTTTTAAACCAAAGAAATTAAAAAAaTTGAAGGACATTAATTAACTAAATTCTAATAGAAAGCGAAACCGTGGATGAAGATGGAAGGTAAAAATAGACCTATAACTATGTTGACTGGCATTTTCTTCAGGCTTTCTGCCTCTACCTATAAACAAAGCCCTTGGTATAGATATTTTTACAAAAGTATTCTATTTTATTTTATTTATTATTTACAGTTTCTCACAAAATATATACTTATTAGTCTATTTTGTTTTGATTAATATTATTTTTGTACTCATTTGAAGGTTACTAAGAAGAGCGACATGAGCGATTTTTACTTCAGTCTTCAAAAGAATGTTGCCTATGGTGCCCGAAATGCAATTGAGCCAACGGCACCCCCAAAGAAGCTTCAGTTAGAGAAGAAAGAGAAGCAGACAGAAGTTCATATTTTGGAGAAGCATGAAGAGAGTTGTAATGGCGATACCTTTAATGACCATCTGTTGCAAAACTCGAACTTACCTTCCTGTTCAGAGAAGACAATAGAAGAGCATCCTCATCTTGAAGAACGCCTTCCGTTTTCAAACAAAACGACACCATCTAATATAGAAGGTACCAGCCCCCCTACTTTACATGATAAAACTCCAGTTCAAGAACAGCCCAAGCATGAGCAAAGTGAACAACCACCAAAGAGTGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCCAAGGAGGTGTGAAATACTTGTCAAACTAGATTAAACTGAGTACTAATATGTAAATGTCATTGTTGTATCAAGAATATCTGATAATTATGTTCTTAATAGTCAAATTAGTCTTTAACCATTGGCTGCAACATTGCATTCTGTTTTATGGTTCGTGTGAGAGCTTCAAATGAAACCCGAAGAACGCAGTTGCTTGAAGTTGCAGCGTTTTCATTGAAAGTAAGTGAAGTTTTCCCTTATAGCAAATATCAAGTTGTGATTTATGAACTTTCAAACATATTTTGTTGCATTAAATGATGGTCCCTTTGTTTGTGCAGATGGAATGCCATTATTAAACTTGTGATATGGAGGCTAGAGATTGGACATAAGCTCCTGCATTAGCATCGCAGACACATCAAGTAGGGAGAAAATCAAATTCTTCCAAACTTTATTATGTATGAGCATATGGAAAATGATTATTTtCTTTGTTGGGACCCAAAAACTGAATGAAGCTTCTCAATGAACTGATTATAGCTAAGCAACTTTGCTTTGAAAATCTCTCCATAAGGAAGAAGATTCCCAGTTTTGAAATACAACACAAATCTTTGTGAACATGTTTCTTAATAAAGTAATCCCCAAGCTTGAAGTTGGAT

mRNA sequence

AGAGGCAATTCGAGTCCTTCTTCGTCGTAAAAGTCGAGTAGATCCCTCTTCTCAAAATTTCTCTCGCCGACCTCCGCCATCTCTCTATATTCCTCCACCGCCACACATCGGCGACTGCCAATTGCACCGCCGCTAGCTCTCTCCGCGCGCGGGATCGAAGTTGCTAGCCGATTTGTGTGGTACTTTGTCCCTTCTCCGATCTGCCACTGTCTGCCTATTGGAAGTCGTTCACCAACTTCTGGCCGTCAGATTTTGTTCGTCTTGCAATCTGCCGCTTGGACCACAGTCACGCTACTCCCGAGATTTGTTTCGAGCTAGTTGCCCTGTCTGTCCGTGCGTTGATTGAGCCTCCGGTGTACTGGAACAGTTAGAAGACAGTAAAATGAGCAAGTATGGCCTGCAGCTTAGGGTTAAGCCATCGCAGCAGAAGCAGCCTACAAGACCACCCCTTCCTGCTCCTCTTGGATTTCAAGATGATGACGATGACGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGCGCTTAAGGATATTGAGGAGCAACATAAGAAAGCACTAGAGGAGGATCCATCTGTCTTTGACTATGATGGAGTTTATGATGAAATGAAAGAAAAGGTTGTTCAACCTCGAGCATATGATCGTGAAGAGCGAAAGCCAAAGTATATTCAAAATTTGATGAAAAAGGCACAAGAGAGAGAGAGAGAGCAGGAGATTATATATGAAAGAAAACTGGCCAAGGAGAGAAGCAAAGATGATCATCTCTATGCTGGTAAGGATAAATTTGTCACCGGTGCCTACAAAAAGAAACTTGCAGAACAAGCAAAATGGATGGAGGAAGAGCGCCTTCGACAACTTCGGGAGGAGAAAGAGGATGTTACTAAGAAGAGCGACATGAGCGATTTTTACTTCAGTCTTCAAAAGAATGTTGCCTATGGTGCCCGAAATGCAATTGAGCCAACGGCACCCCCAAAGAAGCTTCAGTTAGAGAAGAAAGAGAAGCAGACAGAAGTTCATATTTTGGAGAAGCATGAAGAGAGTTGTAATGGCGATACCTTTAATGACCATCTGTTGCAAAACTCGAACTTACCTTCCTGTTCAGAGAAGACAATAGAAGAGCATCCTCATCTTGAAGAACGCCTTCCGTTTTCAAACAAAACGACACCATCTAATATAGAAGGTACCAGCCCCCCTACTTTACATGATAAAACTCCAGTTCAAGAACAGCCCAAGCATGAGCAAAGTGAACAACCACCAAAGAGTGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCCAAGGAGGTGTGAAATACTTGTCAAACTAGATTAAACTGAGTACTAATATGTAAATGTCATTGTTGTATCAAGAATATCTGATAATTATGTTCTTAATAGTCAAATTAGTCTTTAACCATTGGCTGCAACATTGCATTCTGTTTTATGGTTCGTGTGAGAGCTTCAAATGAAACCCGAAGAACGCAGTTGCTTGAAGTTGCAGCGTTTTCATTGAAAATGGAATGCCATTATTAAACTTGTGATATGGAGGCTAGAGATTGGACATAAGCTCCTGCATTAGCATCGCAGACACATCAAGTAGGGAGAAAATCAAATTCTTCCAAACTTTATTATGTATGAGCATATGGAAAATGATTATTTTCTTTGTTGGGACCCAAAAACTGAATGAAGCTTCTCAATGAACTGATTATAGCTAAGCAACTTTGCTTTGAAAATCTCTCCATAAGGAAGAAGATTCCCAGTTTTGAAATACAACACAAATCTTTGTGAACATGTTTCTTAATAAAGTAATCCCCAAGCTTGAAGTTGGAT

Coding sequence (CDS)

ATGAGCAAGTATGGCCTGCAGCTTAGGGTTAAGCCATCGCAGCAGAAGCAGCCTACAAGACCACCCCTTCCTGCTCCTCTTGGATTTCAAGATGATGACGATGACGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGCGCTTAAGGATATTGAGGAGCAACATAAGAAAGCACTAGAGGAGGATCCATCTGTCTTTGACTATGATGGAGTTTATGATGAAATGAAAGAAAAGGTTGTTCAACCTCGAGCATATGATCGTGAAGAGCGAAAGCCAAAGTATATTCAAAATTTGATGAAAAAGGCACAAGAGAGAGAGAGAGAGCAGGAGATTATATATGAAAGAAAACTGGCCAAGGAGAGAAGCAAAGATGATCATCTCTATGCTGGTAAGGATAAATTTGTCACCGGTGCCTACAAAAaGAAACTTGCAGAACAAGCAAAATGGATGGAGGAAGAGCGCCTTCGACAACTTCGGGAGGAGAAAGAGGATGTTACTAAGAAGAGCGACATGAGCGATTTTTACTTCAGTCTTCAAAAGAATGTTGCCTATGGTGCCCGAAATGCAATTGAGCCAACGGCACCCCCAAAGAAGCTTCAGTTAGAGAAGAAAGAGAAGCAGACAGAAGTTCATATTTTGGAGAAGCATGAAGAGAGTTGTAATGGCGATACCTTTAATGACCATCTGTTGCAAAACTCGAACTTACCTTCCTGTTCAGAGAAGACAATAGAAGAGCATCCTCATCTTGAAGAACGCCTTCCGTTTTCAAACAAAACGACACCATCTAATATAGAAGGTACCAGCCCCCCTACTTTACATGATAAAACTCCAGTTCAAGAACAGCCCAAGCATGAGCAAAGTGAACAACCACCAAAGAGTGATCACCATAAAAGAAATGAAGATGCTGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCCAAGGAGGTGTGA

Protein sequence

MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKKALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHKRNEDAVAAAKERFLARKRAKEV*

Homology

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BLAST of Cucsa.178970 vs. Swiss-Prot
Match: NSRP1_BOVIN (Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.4e-31
Identity = 105/333 (31.53%), Postives = 169/333 (50.75%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K +QQ  P     P+  G   DDDDD   V   + R+A+K +A+K  + + +
Sbjct: 7   QYGLILP-KKAQQLHPVLQK-PSVFGNDSDDDDDETSVSESLQREAAKKQAMKQTKLEIQ 66

Query: 63  KALEEDPSVFDYDGVYDEMKEKVVQ--PRAYDREERKPKYIQNLMKKAQEREREQEIIYE 122
           KAL ED +V++YD +YDEM++K  +  P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDF 182
           +K+ +ER  +   +  K+ FVT AYKKKL E+A+  E ER     E + DVTK+ D+S F
Sbjct: 127 KKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGF 186

Query: 183 YFSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSN 242
           Y  L  N A G      PT   ++ + E KE++++               ++D +   S 
Sbjct: 187 YRHL-LNQAVGEEEV--PTCSFREARSEIKEEKSK--------------GYSDEVSSESR 246

Query: 243 LP--SCSEKT---IEEHPHLEERLPFSNKTTPSN--------------IEGTSPPTLHDK 302
           +P  +C  +T   +EE+P  +    F  K++ ++               E  S  + H +
Sbjct: 247 IPPENCIRQTGVKVEENPDADS--DFDAKSSENDEMEGDKGNCRREKGTETLSSHSKHHR 306

Query: 303 TPVQEQPKHEQSE-------QPPKSDHHKRNED 305
            P +     E+ E       +  +S  H++ ED
Sbjct: 307 NPARSPSSSEEREHGTQCHTKSSRSRGHEKRED 318

[Close]

BLAST of Cucsa.178970 vs. Swiss-Prot
Match: NSRP1_MOUSE (Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-29
Identity = 97/304 (31.91%), Postives = 150/304 (49.34%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K     QP    L  P  F  D DDD   V   + R+A+K +A+K  + + +
Sbjct: 7   QYGLILPKKT----QPLHRVLQKPSVFGSDSDDDETSVSESLQREAAKKQAMKQTKLEIQ 66

Query: 63  KALEEDPSVFDYDGVYDEMKEKVVQ--PRAYDREERKPKYIQNLMKKAQEREREQEIIYE 122
           KAL ED +V++YD VYDEM++K  +  P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDF 182
           +K+ +ER  ++  +  K+ FVT AYKKKL E+A+  E E+     E   DVTK+ D+S F
Sbjct: 127 KKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGF 186

Query: 183 YFSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSN 242
           Y  L  N A G   A  P +  ++ +   KE++   +  E + ES           Q S 
Sbjct: 187 YRHL-LNQAVGEEAA--PKSSFREARTVIKEEKLRGYPDETNSES--------RPPQQSC 246

Query: 243 LPSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSD 302
           +     +  EE+P  +      +       +        D     + PKH ++    +S 
Sbjct: 247 VLQRGAQEAEENPDADREFDDESSEDGEKRDHKVKSRGEDTGASMKHPKHHKNRAHSRSS 295

HSP 2 Score: 42.0 bits (97), Expect = 1.5e-02
Identity = 75/339 (22.12%), Postives = 146/339 (43.07%), Query Frame = 1


Query: 7   QLRVKPSQQKQPTRPPLPAPL---GFQD-DDDDDVEREISRQASKNKALKDIE------- 66
           +LR  P +    +RPP  + +   G Q+ +++ D +RE   ++S++   +D +       
Sbjct: 212 KLRGYPDETNSESRPPQQSCVLQRGAQEAEENPDADREFDDESSEDGEKRDHKVKSRGED 271

Query: 67  -------EQHKKALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQER 126
                   +H K      S  +  G+  +   +  Q R ++ ++R+ +  ++  K    R
Sbjct: 272 TGASMKHPKHHKNRAHSRSSSEERGLGTKHHSRGSQSRGHEHQDRQSRDQESCHKDRSHR 331

Query: 127 EREQEIIYERKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDV 186
           E +    +     +E S  DH +   ++      K +  E+ +  E +R +    E+E  
Sbjct: 332 EEKSSHRH-----REASHKDHYWKKHEQ--EDKLKGREQEERQDREGKREKYSSREQERD 391

Query: 187 TKKSDMSDFYFSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTF 246
            +++D  D Y   +K      R   E     ++ + E   K  E    E H +S   +  
Sbjct: 392 RQRND-HDRYSEKEKK-----RKEKEEHTKARRERCEDSGKHREREKPEGHGQS--SERH 451

Query: 247 NDHLLQNSNLPSCSEKTIEEHPHLEERLPFSNKTT---PSNIEGTSPPTLHDKTPVQEQP 306
            D   + S+  S  +  +++    + R    +K     PS+ E TS  T H     +E+P
Sbjct: 452 RDR--RESSPRSRPKDDLDQERSSKARNTEKDKGEQGKPSHSE-TSLATKHRLA--EERP 511

Query: 307 -KHEQSEQPPK--SDHHKR-NEDAVAAAKERFLARKRAK 321
            K  + E+PP+  S   KR NE+ V +A++R+LAR+ A+
Sbjct: 512 EKGSEQERPPEAVSKFAKRSNEETVMSARDRYLARQMAR 530

[Close]

BLAST of Cucsa.178970 vs. Swiss-Prot
Match: NSRP1_RAT (Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.4e-29
Identity = 87/255 (34.12%), Postives = 143/255 (56.08%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD---VEREISRQASKNKALKDIEEQHK 62
           +YGL L  K     QP    L  P  F +D DDD   V   + R+A+K +A++  + + +
Sbjct: 7   QYGLILPKKT----QPLNRVLQKPSVFGNDSDDDEASVSESLQREAAKKQAMRQTKLEIQ 66

Query: 63  KALEEDPSVFDYDGVYDEMKEKVVQ--PRAYDREERKPKYIQNLMKKAQEREREQEIIYE 122
           KAL ED +V++YD +YDEM++K  +  P+    ++RKPKYI NL+K  + R++EQE   E
Sbjct: 67  KALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRME 126

Query: 123 RKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDF 182
           +K+ +ER  +   +  K+ FVT AYKKKL E+A+  E E+     E + DVTK+ D+S F
Sbjct: 127 KKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGF 186

Query: 183 YFSLQKNVAYGARNAIEPTAPPKKLQLEKKEK----QTEVHILEKHEESCNGDTFNDHLL 242
           Y  L  N A G   A+  ++  +   + K+EK      E +   + +++C   +  +   
Sbjct: 187 YRHL-LNQAVG-EEAVPKSSFREARTVIKEEKLRGYPDETNSENRPQQNCALQSGVEEAE 246

Query: 243 QNSNLPSCSEKTIEE 249
           +N +  S SE++ ++
Sbjct: 247 ENPDADSDSEESCDD 255

HSP 2 Score: 32.3 bits (72), Expect = 1.2e+01
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 270 TSPPTLHDKTPVQEQP-KHEQSEQPPK--SDHHKR-NEDAVAAAKERFLARKRAK 321
           TS  T H  T  +E+P K  Q E+PP+  S   KR NE+ V +A++R+LAR+ A+
Sbjct: 483 TSLATKHRLT--EERPEKGSQPERPPEAVSKFAKRSNEETVMSARDRYLARQMAR 535

[Close]

BLAST of Cucsa.178970 vs. Swiss-Prot
Match: NSRP1_HUMAN (Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-28
Identity = 75/182 (41.21%), Postives = 110/182 (60.44%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREIS----RQASKNKALKDIEEQH 62
           +YGL L  K  Q      P L  P  F +D DDD E  +S    R+A+K +A+K  + + 
Sbjct: 7   QYGLILPKKTQQ----LHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEI 66

Query: 63  KKALEEDPSVFDYDGVYDEMKEKVVQ--PRAYDREERKPKYIQNLMKKAQEREREQEIIY 122
           +KAL ED +V++YD +YDEM++K  +  P+    ++RKPKYI NL+K  + R++EQE   
Sbjct: 67  QKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRM 126

Query: 123 ERKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSD 179
           E+K+ +ER  +   +  K+ FVT AYKKKL E+A+  E E+     E   DVTK+ D+S 
Sbjct: 127 EKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSG 184

HSP 2 Score: 48.5 bits (114), Expect = 1.6e-04
Identity = 59/238 (24.79%), Postives = 103/238 (43.28%), Query Frame = 1


Query: 106 QEREREQEIIY-ERKLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREE 165
           Q++ R+QE  Y +R   KER    H  A        +++    ++ +  ++ R R  RE 
Sbjct: 322 QKQSRDQENHYTDRDYRKERDSHRHREA--------SHRDSHWKRHEQEDKPRARDQRER 381

Query: 166 KEDVTKKSDMSDFYFSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCN 225
            + V K+    + Y   ++      R   +   P +K + E+K K  E H+  + E   N
Sbjct: 382 SDRVWKREKDREKYSQREQE---RDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYEN 441

Query: 226 GDTFNDHLLQNSNLPSC--SEKTIEEHPHLEERLPF-----------------SNKTTPS 285
            D + D   +   + S   ++   E  P+   +  F                  N+  PS
Sbjct: 442 NDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPS 501

Query: 286 NIEGTSPPTLHDKTPVQEQPKHEQSEQPPK--SDHHKRN-EDAVAAAKERFLARKRAK 321
           N E +S    H  T  + Q K ++ E+PP+  S   KRN E+ V +A++R+LAR+ A+
Sbjct: 502 NSE-SSLGAKHRLTE-EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMAR 546

[Close]

BLAST of Cucsa.178970 vs. Swiss-Prot
Match: NSRP1_DANRE (Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 7.8e-28
Identity = 96/325 (29.54%), Postives = 159/325 (48.92%), Query Frame = 1


Query: 3   KYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDD--VEREISRQASKNKALKDIEEQHKK 62
           +YGL L     Q++     PL  P  F DD DD+  V   + ++A K K +K    + +K
Sbjct: 7   QYGLIL----PQKRASKSAPLARPSVFGDDSDDETSVGESLQKEAIKKKMMKQTRLEMQK 66

Query: 63  ALEEDPSVFDYDGVYDEMKEKVVQP--RAYDREERKPKYIQNLMKKAQEREREQEIIYER 122
           ALEED +V++YD VYD+++++ ++   +    E++KPKYI  L++  +ER++EQE   ER
Sbjct: 67  ALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDER 126

Query: 123 KLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFY 182
           K+ KER  +   +A K+ FVT AY++KL E+ + +E E+     E   DV K+ D+S FY
Sbjct: 127 KIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALDVKKQKDLSGFY 186

Query: 183 -FSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSN 242
              L + V        E   P +  Q E+K   +         ES             +N
Sbjct: 187 RHFLNQTVG-------EEVVPDRSAQSEEKATSSAAAERSPSPES------------TAN 246

Query: 243 LPSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSD 302
                 ++  +   ++ +  FS KTT +N    +      K+P+ +    ++ E+  K  
Sbjct: 247 RRESEAESHSDDDQVDVKPAFS-KTTANN---HAKRQYRQKSPLSDSDDGDERERERKEI 304

Query: 303 HHKRNEDAVA-AAKERFLARKRAKE 322
             K ++D     AKE+   R R K+
Sbjct: 307 KEKSHKDRDRDRAKEKERERMRDKD 304

[Close]

BLAST of Cucsa.178970 vs. TrEMBL
Match: A0A0A0LJE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 7.0e-185
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120
           ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180
           AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS 240
           LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS 240

Query: 241 CSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHK 300
           CSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHK
Sbjct: 241 CSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHK 300

Query: 301 RNEDAVAAAKERFLARKRAKEV 323
           RNEDAVAAAKERFLARKRAKEV
Sbjct: 301 RNEDAVAAAKERFLARKRAKEV 322

[Close]

BLAST of Cucsa.178970 vs. TrEMBL
Match: A0A061GV10_THECC (Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao GN=TCM_041289 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.2e-104
Identity = 208/324 (64.20%), Postives = 241/324 (74.38%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP PLGF+DDDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERK 120
           KALEEDPSVFDYDGVYDEMKEKVV+PR  DREER+ KYI NL+KKA++R+ EQEI+YERK
Sbjct: 61  KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQSKYIHNLIKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           L KERSK+DHLYA KDKFVT AYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDLSDFYF 180

Query: 181 SLQKNVAYGARNAIEPTAPPKKLQLEKKEK--QTEVHILEKHEESCNGDTFNDHLLQNSN 240
           +L KNVA+GA N + P  P K  +  K EK  + E+ ++++ +            L NSN
Sbjct: 181 NLGKNVAFGA-NEVGPRMPEKHTESRKPEKKDEKEIDVIKRVQP-----------LPNSN 240

Query: 241 LPSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSD 300
            P  S  T         R  F ++ +        P T   +T   +QP  +Q    PK D
Sbjct: 241 APESSGVTDRTQDETSSRENFESQDSRPITVDVLPETALQETSSVKQPSVDQ----PKRD 300

Query: 301 HHKRNEDAVAAAKERFLARKRAKE 322
           HHKR EDAVAAA+ERFLARKRAKE
Sbjct: 301 HHKRGEDAVAAARERFLARKRAKE 308

[Close]

BLAST of Cucsa.178970 vs. TrEMBL
Match: A0A0D2PQG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.3e-103
Identity = 207/322 (64.29%), Postives = 238/322 (73.91%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERK 120
           KALEEDPSVFDYDGVYD MKE+VV+PRA D EERKPKYI NLMKKA++R+ EQEI+YERK
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKPKYILNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           L KERSK+DHLYA KDKFVT AYK+KLAEQAKWMEEERLRQLREEKEDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 SLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLP 240
           +L KNVA+GA       A P+K +L + EK+ E  +L +              L +S  P
Sbjct: 181 NLGKNVAFGANE-----AKPRKPELREPEKEKEKEVLNRVNP-----------LPDSVSP 240

Query: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300
             S            R  F ++ +    E T P T   +T  ++QP  +Q    PKSDHH
Sbjct: 241 ESSAVIDRTRDESSFREIFDSRDSKPITEDTVPDTAVQETTSEKQPSVDQ----PKSDHH 300

Query: 301 KRNEDAVAAAKERFLARKRAKE 322
           KR  DAVAAA+ERFLARKRAKE
Sbjct: 301 KRGADAVAAARERFLARKRAKE 302

[Close]

BLAST of Cucsa.178970 vs. TrEMBL
Match: A0A0B0NEG8_GOSAR (Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 6.7e-103
Identity = 205/322 (63.66%), Postives = 236/322 (73.29%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERK 120
           KALEEDP VFDYDGVYD MKE+VV+PRA DREERKPKYI NLMKKA++R+ EQEI+YERK
Sbjct: 61  KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERKPKYIHNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           L KERSK+DHLYA KDKFVT AYK+KLAEQAKWMEEERLRQLREEKEDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 SLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLP 240
           +L KNVA+GA       A P++ +L + EK+ E  +L +            +LL +S  P
Sbjct: 181 NLGKNVAFGANE-----AKPREPELREPEKEKEKEVLNR-----------VNLLPDSIAP 240

Query: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300
             S            +  F ++ +    E   P      T VQE    +Q    PKSDHH
Sbjct: 241 ESSAVIDRTRDESSSQEIFDSRDSKPITEDAVP-----DTAVQETTSEKQPPDQPKSDHH 300

Query: 301 KRNEDAVAAAKERFLARKRAKE 322
           KR  DAVAAA+ERFLARKRAKE
Sbjct: 301 KRGADAVAAARERFLARKRAKE 301

[Close]

BLAST of Cucsa.178970 vs. TrEMBL
Match: A0A0D2QPK2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.3e-102
Identity = 207/323 (64.09%), Postives = 238/323 (73.68%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERK-PKYIQNLMKKAQEREREQEIIYER 120
           KALEEDPSVFDYDGVYD MKE+VV+PRA D EERK PKYI NLMKKA++R+ EQEI+YER
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKQPKYILNLMKKAEQRKWEQEIVYER 120

Query: 121 KLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFY 180
           KL KERSK+DHLYA KDKFVT AYK+KLAEQAKWMEEERLRQLREEKEDVTKKSD+SDFY
Sbjct: 121 KLVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFY 180

Query: 181 FSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNL 240
           F+L KNVA+GA       A P+K +L + EK+ E  +L +              L +S  
Sbjct: 181 FNLGKNVAFGANE-----AKPRKPELREPEKEKEKEVLNRVNP-----------LPDSVS 240

Query: 241 PSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDH 300
           P  S            R  F ++ +    E T P T   +T  ++QP  +Q    PKSDH
Sbjct: 241 PESSAVIDRTRDESSFREIFDSRDSKPITEDTVPDTAVQETTSEKQPSVDQ----PKSDH 300

Query: 301 HKRNEDAVAAAKERFLARKRAKE 322
           HKR  DAVAAA+ERFLARKRAKE
Sbjct: 301 HKRGADAVAAARERFLARKRAKE 303

[Close]

BLAST of Cucsa.178970 vs. TAIR10
Match: AT2G27285.1 (AT2G27285.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 305.1 bits (780), Expect = 5.3e-83
Identity = 174/333 (52.25%), Postives = 222/333 (66.67%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPT-RPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQ+R  PSQ+KQ + RPPL     F +++D DVE+EISRQA+K KA K+IEEQHK
Sbjct: 1   MKKYGLQIRA-PSQKKQSSSRPPLRPASIFDEEEDHDVEKEISRQATKTKAHKEIEEQHK 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERK 120
           KALEEDPS F YD VYD+MK+K V PR  DREERKP+YIQNLMK+A+ RE+E EI+YERK
Sbjct: 61  KALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           LAKER KD+HL++ K+KFVTGAYK+KL EQ KW+ EERLR+LREE++DVTKK D+SDFYF
Sbjct: 121 LAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDLSDFYF 180

Query: 181 SLQKNVAYGARNA-------IEPTAPPKKLQLEKK-----EKQTEVHILEKHEESCNGDT 240
           ++ KNVA+GAR         +E     +KL+ ++K     E + EV  +EK  +S   + 
Sbjct: 181 NIGKNVAFGAREVEAKEAEKLEEQRKAEKLEEQRKAEKLEELRKEVTRVEKKRKSPEKEV 240

Query: 241 FNDHLLQNSNLPSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKH 300
             D    +    S   K++E         P   +   S  E  S  T   K+ ++E  K 
Sbjct: 241 SPD----SGEFGSSRSKSLE---------PLEAEQAVSEKEMGSDGTEERKSSIKEAAK- 300

Query: 301 EQSEQPPKSDHHKRNEDAVAAAKERFLARKRAK 321
              E P   +  KR EDA+AAAKERFLARK+AK
Sbjct: 301 ---EVPKAINDQKRREDAIAAAKERFLARKKAK 315

[Close]

BLAST of Cucsa.178970 vs. TAIR10
Match: AT2G27280.1 (AT2G27280.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-67
Identity = 127/223 (56.95%), Postives = 173/223 (77.58%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPL--PAPLGFQDDDDDDVEREISRQASKNKALKDIEEQH 60
           + KYGLQ+R  PSQ+KQ +  PL   A +  +DD+++DVE+EISRQASK K+LK IE+QH
Sbjct: 142 IKKYGLQIRA-PSQKKQSSSRPLLRTASIFGEDDEENDVEKEISRQASKTKSLKKIEKQH 201

Query: 61  KKALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYER 120
           KKA+EEDPS F YD VYD++K +   PR  DREE K +YIQ++MK+A+ RE+E EI+YER
Sbjct: 202 KKAIEEDPSAFAYDEVYDDIKHEAALPRMQDREEHKSRYIQHIMKQAERREKEHEIVYER 261

Query: 121 KLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFY 180
           KLAKER+KD+HLY+ K+KFVTG +K+KL EQ KW+EEERLR+LREE++DVTKK+D+S+FY
Sbjct: 262 KLAKERAKDEHLYSDKEKFVTGPFKRKLEEQKKWLEEERLRELREERDDVTKKNDLSEFY 321

Query: 181 FSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEE 222
            ++ KNVA+GAR+ IE     +  +L K ++  E+   E  +E
Sbjct: 322 INIGKNVAFGARD-IEAREAGRLKELRKVDRLEELRKEETRKE 362

HSP 2 Score: 111.3 bits (277), Expect = 1.1e-24
Identity = 97/327 (29.66%), Postives = 153/327 (46.79%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPL--PAPLGFQDDDDDDVEREISRQASKNKALKDIEEQH 60
           + KYGLQ+R  PSQ+KQ +  PL   A +  +DD+++DVE+EISRQASK K+LK IE+QH
Sbjct: 142 IKKYGLQIRA-PSQKKQSSSRPLLRTASIFGEDDEENDVEKEISRQASKTKSLKKIEKQH 201

Query: 61  KKALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYER 120
           KKA+EEDPS F YD VYD++K +   PR                 + +E  + + I +  
Sbjct: 202 KKAIEEDPSAFAYDEVYDDIKHEAALPRM----------------QDREEHKSRYIQHIM 261

Query: 121 KLAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFY 180
           K A+ R K+  +           Y++KLA+     E  +   L  +KE    K     F 
Sbjct: 262 KQAERREKEHEI----------VYERKLAK-----ERAKDEHLYSDKE----KFVTGPFK 321

Query: 181 FSLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNL 240
             L++   +     +      ++L+ E+ +   +  + E +        F    ++    
Sbjct: 322 RKLEEQKKWLEEERL------RELREERDDVTKKNDLSEFYINIGKNVAFGARDIEAREA 381

Query: 241 PSCSE-KTIEEHPHLEERLPFSNKTTPSNIEGTSPPT----LHDKTPVQEQPKHEQSEQP 300
               E + ++    L +      K   S  +  SP +    L  K  V+  P+    ++ 
Sbjct: 382 GRLKELRKVDRLEELRKEETRKEKKRKSPEKEVSPDSGDFGLSSKKSVK--PQDASIKEE 424

Query: 301 PKSDHHKRNEDAVAAAKERFLARKRAK 321
            K       EDA+A AKERFL+RK+AK
Sbjct: 442 AKETQKATREDAIATAKERFLSRKKAK 424

[Close]

BLAST of Cucsa.178970 vs. TAIR10
Match: AT1G55928.1 (AT1G55928.1 Coiled-coil domain-containing protein 55 (DUF2040))

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-57
Identity = 128/292 (43.84%), Postives = 185/292 (63.36%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           M+K+GLQLR   S++  P      AP+  +D++D+DV++EISRQASK K+LK  EEQHKK
Sbjct: 12  MNKFGLQLRKTLSKKVLPI-----APILGEDEEDNDVDKEISRQASKTKSLKKFEEQHKK 71

Query: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREE-RKPKYIQNLMKKAQEREREQEIIYERK 120
           ALEEDP  F YD VYD+ K++   PR ++R+E  KP Y Q + +KA  R++E+EI+YERK
Sbjct: 72  ALEEDPCAFAYDEVYDDTKQEAPLPRLHERQECNKPIYNQLMKEKADRRQKEREIVYERK 131

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           LAKER+K+ HL+  + K VTG+YK+KL E+ +W+ EERLR+L EEK+DVTKK D+SDFYF
Sbjct: 132 LAKERAKEQHLFPDQVKVVTGSYKRKLEERDQWLSEERLRELGEEKDDVTKKKDLSDFYF 191

Query: 181 SLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLP 240
           ++ KNVA+GAR+        K  + E+ ++Q +V  LE+  E    ++    +L +S   
Sbjct: 192 NIGKNVAFGARDI-------KARETERLKEQRKVPKLEELREKMKTESPERVVLPDSRDI 251

Query: 241 SCSEKTI-----EEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPK 287
             S + I      EH   EE++         N + T    L  K   + +P+
Sbjct: 252 GSSCRIIVELQEAEHVASEEKM---------NSDATEERDLSIKGAAKHEPR 282

[Close]

BLAST of Cucsa.178970 vs. NCBI nr
Match: gi|449470301|ref|XP_004152856.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus])

HSP 1 Score: 654.4 bits (1687), Expect = 1.0e-184
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120
           ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180
           AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS 240
           LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS 240

Query: 241 CSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHK 300
           CSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHK
Sbjct: 241 CSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHK 300

Query: 301 RNEDAVAAAKERFLARKRAKEV 323
           RNEDAVAAAKERFLARKRAKEV
Sbjct: 301 RNEDAVAAAKERFLARKRAKEV 322

[Close]

BLAST of Cucsa.178970 vs. NCBI nr
Match: gi|659069555|ref|XP_008450616.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo])

HSP 1 Score: 593.6 bits (1529), Expect = 2.1e-166
Identity = 299/322 (92.86%), Postives = 302/322 (93.79%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60
           MSKYGLQLRVKPSQQKQP RPPLPAPLGFQDDDDD+VEREISRQASKNKALKDIEEQHKK
Sbjct: 13  MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 72

Query: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120
           ALEEDPSVFDYDGVYDEMKEK VQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL
Sbjct: 73  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 132

Query: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180
           AKERSKDDHLYAGKDKFVT AYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS
Sbjct: 133 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 192

Query: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS 240
           LQKNVAYGARNAIEP A PKKLQLEKKEKQTEVHILEKHEESCNGDTFNDH LQNS    
Sbjct: 193 LQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHQLQNS---- 252

Query: 241 CSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHHK 300
              KTIEEH HLEERL  SNKTTPS+IEGTSPPTLHDK  VQE+PKHE SEQPPK DHHK
Sbjct: 253 ---KTIEEHSHLEERLSASNKTTPSDIEGTSPPTLHDKALVQERPKHELSEQPPKRDHHK 312

Query: 301 RNEDAVAAAKERFLARKRAKEV 323
           RNEDAVAAAKERFLARKRAKEV
Sbjct: 313 RNEDAVAAAKERFLARKRAKEV 327

[Close]

BLAST of Cucsa.178970 vs. NCBI nr
Match: gi|590586457|ref|XP_007015711.1| (Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 387.9 bits (995), Expect = 1.8e-104
Identity = 208/324 (64.20%), Postives = 241/324 (74.38%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP PLGF+DDDDDDVEREISRQASKNK+LK+IEEQH+
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPLGFRDDDDDDVEREISRQASKNKSLKEIEEQHR 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERK 120
           KALEEDPSVFDYDGVYDEMKEKVV+PR  DREER+ KYI NL+KKA++R+ EQEI+YERK
Sbjct: 61  KALEEDPSVFDYDGVYDEMKEKVVRPRVQDREERQSKYIHNLIKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           L KERSK+DHLYA KDKFVT AYKKKLAEQAKWMEEERLRQLREEK+DVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDLSDFYF 180

Query: 181 SLQKNVAYGARNAIEPTAPPKKLQLEKKEK--QTEVHILEKHEESCNGDTFNDHLLQNSN 240
           +L KNVA+GA N + P  P K  +  K EK  + E+ ++++ +            L NSN
Sbjct: 181 NLGKNVAFGA-NEVGPRMPEKHTESRKPEKKDEKEIDVIKRVQP-----------LPNSN 240

Query: 241 LPSCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSD 300
            P  S  T         R  F ++ +        P T   +T   +QP  +Q    PK D
Sbjct: 241 APESSGVTDRTQDETSSRENFESQDSRPITVDVLPETALQETSSVKQPSVDQ----PKRD 300

Query: 301 HHKRNEDAVAAAKERFLARKRAKE 322
           HHKR EDAVAAA+ERFLARKRAKE
Sbjct: 301 HHKRGEDAVAAARERFLARKRAKE 308

[Close]

BLAST of Cucsa.178970 vs. NCBI nr
Match: gi|823123751|ref|XP_012477249.1| (PREDICTED: nuclear speckle splicing regulatory protein 1-like [Gossypium raimondii])

HSP 1 Score: 384.4 bits (986), Expect = 1.9e-103
Identity = 207/322 (64.29%), Postives = 238/322 (73.91%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPVTRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERK 120
           KALEEDPSVFDYDGVYD MKE+VV+PRA D EERKPKYI NLMKKA++R+ EQEI+YERK
Sbjct: 61  KALEEDPSVFDYDGVYDAMKEEVVRPRAQDHEERKPKYILNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           L KERSK+DHLYA KDKFVT AYK+KLAEQAKWMEEERLRQLREEKEDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 SLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLP 240
           +L KNVA+GA       A P+K +L + EK+ E  +L +              L +S  P
Sbjct: 181 NLGKNVAFGANE-----AKPRKPELREPEKEKEKEVLNRVNP-----------LPDSVSP 240

Query: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300
             S            R  F ++ +    E T P T   +T  ++QP  +Q    PKSDHH
Sbjct: 241 ESSAVIDRTRDESSFREIFDSRDSKPITEDTVPDTAVQETTSEKQPSVDQ----PKSDHH 300

Query: 301 KRNEDAVAAAKERFLARKRAKE 322
           KR  DAVAAA+ERFLARKRAKE
Sbjct: 301 KRGADAVAAARERFLARKRAKE 302

[Close]

BLAST of Cucsa.178970 vs. NCBI nr
Match: gi|728829958|gb|KHG09401.1| (Nuclear speckle splicing regulatory 1 [Gossypium arboreum])

HSP 1 Score: 382.1 bits (980), Expect = 9.6e-103
Identity = 205/322 (63.66%), Postives = 236/322 (73.29%), Query Frame = 1


Query: 1   MSKYGLQLRVKPSQQKQP-TRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHK 60
           M KYGLQLRV PSQQK+P TRPPLP P GFQ+DDDDDVE+EISRQASKNKALK++EEQHK
Sbjct: 1   MKKYGLQLRVPPSQQKKPATRPPLPPPRGFQEDDDDDVEKEISRQASKNKALKEVEEQHK 60

Query: 61  KALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERK 120
           KALEEDP VFDYDGVYD MKE+VV+PRA DREERKPKYI NLMKKA++R+ EQEI+YERK
Sbjct: 61  KALEEDPCVFDYDGVYDAMKEEVVRPRAQDREERKPKYIHNLMKKAEQRKWEQEIVYERK 120

Query: 121 LAKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYF 180
           L KERSK+DHLYA KDKFVT AYK+KLAEQAKWMEEERLRQLREEKEDVTKKSD+SDFYF
Sbjct: 121 LVKERSKEDHLYADKDKFVTSAYKRKLAEQAKWMEEERLRQLREEKEDVTKKSDLSDFYF 180

Query: 181 SLQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLP 240
           +L KNVA+GA       A P++ +L + EK+ E  +L +            +LL +S  P
Sbjct: 181 NLGKNVAFGANE-----AKPREPELREPEKEKEKEVLNR-----------VNLLPDSIAP 240

Query: 241 SCSEKTIEEHPHLEERLPFSNKTTPSNIEGTSPPTLHDKTPVQEQPKHEQSEQPPKSDHH 300
             S            +  F ++ +    E   P      T VQE    +Q    PKSDHH
Sbjct: 241 ESSAVIDRTRDESSSQEIFDSRDSKPITEDAVP-----DTAVQETTSEKQPPDQPKSDHH 300

Query: 301 KRNEDAVAAAKERFLARKRAKE 322
           KR  DAVAAA+ERFLARKRAKE
Sbjct: 301 KRGADAVAAARERFLARKRAKE 301

The following BLAST results are available for this feature:

BLAST of Cucsa.178970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NSRP1_BOVIN	3.4e-31	31.53	Nuclear speckle splicing regulatory protein 1 OS=Bos taurus GN=NSRP1 PE=2 SV=1	[more]
NSRP1_MOUSE	1.8e-29	31.91	Nuclear speckle splicing regulatory protein 1 OS=Mus musculus GN=Nsrp1 PE=1 SV=1	[more]
NSRP1_RAT	5.4e-29	34.12	Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus GN=Nsrp1 PE=1...	[more]
NSRP1_HUMAN	2.0e-28	41.21	Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1	[more]
NSRP1_DANRE	7.8e-28	29.54	Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2	[more]

BLAST of Cucsa.178970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJE9_CUCSA	7.0e-185	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070270 PE=4 SV=1	[more]
A0A061GV10_THECC	1.2e-104	64.20	Coiled-coil domain-containing protein 55, putative isoform 1 OS=Theobroma cacao ...	[more]
A0A0D2PQG7_GOSRA	1.3e-103	64.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1	[more]
A0A0B0NEG8_GOSAR	6.7e-103	63.66	Nuclear speckle splicing regulatory 1 OS=Gossypium arboreum GN=F383_10067 PE=4 S...	[more]
A0A0D2QPK2_GOSRA	3.3e-102	64.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124100 PE=4 SV=1	[more]

BLAST of Cucsa.178970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27285.1	5.3e-83	52.25	Coiled-coil domain-containing protein 55 (DUF2040)	[more]
AT2G27280.1	1.8e-67	56.95	Coiled-coil domain-containing protein 55 (DUF2040)	[more]
AT1G55928.1	1.7e-57	43.84	Coiled-coil domain-containing protein 55 (DUF2040)	[more]

BLAST of Cucsa.178970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470301\|ref\|XP_004152856.1\|	1.0e-184	100.00	PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis sativus]	[more]
gi\|659069555\|ref\|XP_008450616.1\|	2.1e-166	92.86	PREDICTED: nuclear speckle splicing regulatory protein 1-like [Cucumis melo]	[more]
gi\|590586457\|ref\|XP_007015711.1\|	1.8e-104	64.20	Coiled-coil domain-containing protein 55, putative isoform 1 [Theobroma cacao]	[more]
gi\|823123751\|ref\|XP_012477249.1\|	1.9e-103	64.29	PREDICTED: nuclear speckle splicing regulatory protein 1-like [Gossypium raimond...	[more]
gi\|728829958\|gb\|KHG09401.1\|	9.6e-103	63.66	Nuclear speckle splicing regulatory 1 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018612	DUF2040

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.178970.1	Cucsa.178970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018612	Domain of unknown function DUF2040	PFAM	PF09745	DUF2040	coord: 55..171 score: 8.2
None	No IPR available	unknown	Coil	Coil	coord: 144..171 score: -coord: 44..64 scor
None	No IPR available	PANTHER	PTHR30060	INNER MEMBRANE PROTEIN	coord: 1..322 score: 4.4E
None	No IPR available	PANTHER	PTHR30060:SF0	COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..322 score: 4.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.178970	Csa2G070270	Cucumber (Chinese Long) v2	cgycuB274
Cucsa.178970	MELO3C003924	Melon (DHL92) v3.5.1	cgymeB320
Cucsa.178970	CSPI02G06720	Wild cucumber (PI 183967)	cgycpiB284
Cucsa.178970	MELO3C003924.2	Melon (DHL92) v3.6.1	cgymedB315
Cucsa.178970	CsaV3_2G009130	Cucumber (Chinese Long) v3	cgycucB287

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.178970	Watermelon (97103) v2	cgywmbB323
Cucsa.178970	Wax gourd	cgywgoB367
Cucsa.178970	Cucurbita maxima (Rimu)	cgycmaB0509
Cucsa.178970	Cucurbita maxima (Rimu)	cgycmaB0510
Cucsa.178970	Cucurbita moschata (Rifu)	cgycmoB0509
Cucsa.178970	Cucurbita moschata (Rifu)	cgycmoB0510
Cucsa.178970	Watermelon (Charleston Gray)	cgywcgB319
Cucsa.178970	Watermelon (97103) v1	cgywmB341
Cucsa.178970	Cucurbita pepo (Zucchini)	cgycpeB0491
Cucsa.178970	Cucurbita pepo (Zucchini)	cgycpeB0492
Cucsa.178970	Bottle gourd (USVL1VR-Ls)	cgylsiB300
Cucsa.178970	Silver-seed gourd	carcgyB0005
Cucsa.178970	Silver-seed gourd	carcgyB0204