Cucsa.173410 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.173410
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionProtein TIC 40, chloroplastic
Locationscaffold01209 : 6452 .. 9379 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTTTTAATCTTTATTCCTTCTTTATTTGACTCTTCTCTGTTTTCTTCGCTAACATGGAAACCAGTGGCCGAACGTTTTGCAACGGTTTCTTCTTCTACTACCAGCAATGACTCGTCTTCTGTTGGTGTTCCATCAGTATCTATTCCTCCCCcTTCCTCATATGTGTAATTTTTCGTTTCCTTATCTTTTGTTTTTACTGGGTTTTTGGAATCCAGTTCTACGTTTTTCTCCCTCATAAGAAATGGGTTTGATCGAATTGATATGATATGAATTAAGTTCAGTATTTTAGATGCAACTGACAGATTTCTTCTGGTTGCAACTTTTTTAGTGGGTCGCCTCTCTTTTGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGggTGAGTGAGAACCAAACCTGGTTGTCTGAACTAGAACTACATTTTTtTTCTAATGTGGATGTTATTAAAACTCTCATCAAACTCTTAGGTTGAATGTGCTTTTAACAGATGTTTTAAAAATTTGCAGGTGGCTTCTTACTTAAAGGTGAGTGTTCTTCCACAAGGTATGGGATTATATTGTTCCTTATAAAATGTCCGCTGTCATTTCTGCTAGAGTTGGTCTTCCATAGCTCTTTCTTAGCTTGGAGTTGGACCGATATTCTTCTATGCAGTTGTTGGCCTTTTGAAAAGTTGTATCATCCCTTTTTACAAAAAAATTATGTACTTTTGTTGTCGGAAAAAGGTGGTGAATGGCTTTGCTTCTCATCTCATTATTATAACCCTTAACTTTGATTTTGTTTTACTTTTTCAATTTGTTTTTGCATGAAAAATGTATTTCACATCCACGGGTTCTTCTGTTCTCCTTTTTAGTTATCACCTTTCTTTATTGATTGAACTGGCCACTAAACCCTCATTGAAAATTTCAAGTATTAGTAAATGAACGTAAGAAAACCATGTGCTAGCATTTTGGAATTTGGTATTATCATTCTGATGTTTTGCGTTGATGTTTCTATAATTCTGTGTTTTAAGTGGTAGAACTTACTTGGGTTTAAGGGTCCAATTTACAGTTGAGGGAAATTGTCTAGTCTCTTTCTATCTTACAACTGTGTTTCTACTATATATCTGTATATATATACTTTTTACAGTATCATACATCCGTACCTTACACATTTCAACTACCATTACTAGTTTACTTTTGACACTCCCATGCTTTTCATTGATGTGTTGCTTCCTCGACCCCCATATTCTTGCCTACTGACCAATTTCAATGCTTAATAAATCGATCCCACTCTTGCCATATTTTCTTTTGTAAAAACGTCAAGGATTGGGGGACTATAAAAATTTCTCACATAAAATGATTTGTGTTTTAGTACGTAATATTGTTTCTGTTTACTCCCCCCAAAAGCAGAATCTTTTCCATTATTTTTTCTTCCCTTTGCATGGCTACATTTCTATGGGTCTTTGGTCTATATAAGATTTTTGTACCACTTTTTTTTtGCATAAAAGTTACAATTTGGATCAGTACTAATTTTGACATGTCTGTGTTTTCTTTGTTCCTATATATTTTATTGTGAATTTGTAATTACATTCCAGAAATATGCAATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAACAGTCCGATGAGTAATCCTACACTATCGTCTGGATCACCTTTTCCAACACCTCCGACATTTGCAACTGGCACAACAATTTCTCCATCTGTTTCTGAACCTGCTGTGTCAATTGATGTAACTGCAACAAAAGTTGAAGAAGAACCAGTTACTAATGTCAAAAGTAGGACAGAGAACATGGAAGCAAAGAAGTTTGGTAACTAAGGATCCTCCTATTATATCACTTCAAATTTCAATATGTTGGTGGTTCTTGATTTACTTTTGTGATATGATTTCTGTGCTCTCAAGTGACAACCTCTTGGCTAAAGGGTTGAACGTTTGTGATACAAATGTCAAAGTTTACATTTTAGTTCGTTTGATGAGCATGACTTGATTATCTTTTAGGTTTTATTGTATCTTGGTATTGGTGTGTGAACAGTTTCTTCTGTGATCTTCTGGATTTGTTGATTCTCAAACAACTTTATGATATTTTGTTATCAAAACTCAAACTGATTTATACTATCTTCATTTCCTAACCTCCTTATTGCGTTCATCAATAAAATTTGTTCCGAATTCCAAGGTAGGAAGCTAATTCACGAAACCTTCTTTGACAGCTTTTGTAGACGTTTCTCCTGAAGAAACTGACCAAAAGAGTCCATTCAAGGAAGATGCCACAGATGCAGATGTTTCAAAGAGTGCTCAGCCTACTGAGGAAGTAAGTTTGTTTTTTtAGCCTTGTGGTGGGGTGTCTAGCATTGGTATGGTGATTTACTCTTTGATTTATTTATTCAGCTTCCACAGAATGGAGCTGCTTCTAAGCAGGCATATAATGGTTCAGATGGATCACAATTCAGCCGTAAGTTGAGAACAATAAATGATTTTACTTCTTTTGTAAATGCTACTGCTTCACTCGGTGTGTATGTGCGCGTGCGCAAGATCTACTTGAATAGAAAGTATCTCTGTACACTTCAATCGAAAGTAAAATGAAATGGCTTGGCAACTCAAAACTCAGTCTTGAAAAATAAGAGAGTTTTGATCTACAAATTGACTCACTCTTGTAAAATTTAACCTCGTTTTTTGATATTTGCATCTCATAAATCTTCTTTCATAATTTTTATGACTTTATTTATTTAACTTTTGTGCTTCCAGACATTCATGATTGAATGTGTATTACTGCAGTTTGGTTATTGTATAAATTTTATTAAAATCTATGATATTCTCATCTATTAGGAAAACCAGGCTCAGTCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAGAAGATGATATATCC

mRNA sequence

ATGATGCTTTTAATCTTTATTCCTTCTTTATTTGACTCTTCTCTGTTTTCTTCGCTAACATGGAAACCAGTGGCCGAACGTTTTGCAACGGTTTCTTCTTCTACTACCAGCAATGACTCGTCTTCTGTTGGTGTTCCATCAGTATCTATTCCTCCCCCTTCCTCATATGTTGGGTCGCCTCTCTTTTGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGGAAATATGCAATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAACAGTCCGATGAGTAATCCTACACTATCGTCTGGATCACCTTTTCCAACACCTCCGACATTTGCAACTGGCACAACAATTTCTCCATCTGTTTCTGAACCTGCTGTGTCAATTGATGTAACTGCAACAAAAGTTGAAGAAGAACCAGTTACTAATGTCAAAAGTAGGACAGAGAACATGGAAGCAAAGAAGTTTGCTTTTGTAGACGTTTCTCCTGAAGAAACTGACCAAAAGAGTCCATTCAAGGAAGATGCCACAGATGCAGATGTTTCAAAGAGTGCTCAGCCTACTGAGGAACTTCCACAGAATGGAGCTGCTTCTAAGCAGGCATATAATGGTTCAGATGGATCACAATTCAGCCGAAAACCAGGCTCAGTCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAGAAGATGATATATCC

Coding sequence (CDS)

ATGATGCTTTTAATCTTTATTCCTTCTTTATTTGACTCTTCTCTGTTTTCTTCGCTAACATGGAAACCAGTGGCCGAACGTTTTGCAACGGTTTCTTCTTCTACTACCAGCAATGACTCGTCTTCTGTTGGTGTTCCATCAGTATCTATTCCTCCCCcTTCCTCATATGTTGGGTCGCCTCTCTTTTGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGgAAATATGCAATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAACAGTCCGATGAGTAATCCTACACTATCGTCTGGATCACCTTTTCCAACACCTCCGACATTTGCAACTGGCACAACAATTTCTCCATCTGTTTCTGAACCTGCTGTGTCAATTGATGTAACTGCAACAAAAGTTGAAGAAGAACCAGTTACTAATGTCAAAAGTAGGACAGAGAACATGGAAGCAAAGAAGTTTGCTTTTGTAGACGTTTCTCCTGAAGAAACTGACCAAAAGAGTCCATTCAAGGAAGATGCCACAGATGCAGATGTTTCAAAGAGTGCTCAGCCTACTGAGGAACTTCCACAGAATGGAGCTGCTTCTAAGCAGGCATATAATGGTTCAGATGGATCACAATTCAGCCGAAAACCAGGCTCAGTCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAGAAGATGATATATCC

Protein sequence

MMLLIFIPSLFDSSLFSSLTWKPVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVGLSALFTWKYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISPSVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYX
Homology
[Close]
BLAST of Cucsa.173410 vs. Swiss-Prot
Match: TIC40_PEA (Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.1e-46
Identity = 118/248 (47.58%), Postives = 148/248 (59.68%), Query Frame = 1 

Query: 18  SLTWKPVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVGLSALFTW- 77
           S+  K  A  FA++SSS    +++SVGV     PPP S VGSPLFW+G+GVG SALF+  
Sbjct: 61  SVQGKVNAHDFASISSSN-GQETTSVGVSPQLSPPPPSTVGSPLFWIGIGVGFSALFSVV 120

Query: 78  -----KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATG------------- 137
                KYAMQQAFK+MM QMN+QN+P  +   SSG PFP P   A+G             
Sbjct: 121 ASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGFAGNQSQ 180

Query: 138 TTISPSVSEPAVSIDVTATKVE---EEPVTNVKSRTE-NMEAKKFAFVDVSPEETDQKSP 197
            T + S S+  V++D+ ATKVE     P  NVK   E   E KK AFVDVSPEET QK+ 
Sbjct: 181 ATSTRSASQSTVTVDIPATKVEAAAPAPDINVKEEVEVKNEPKKSAFVDVSPEETVQKNA 240

Query: 198 FK--EDATDADVSKSAQPTEELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMED 241
           F+  +D  ++   K A+   E  QNG   KQ +  S  S   RK  S LSV+A+EKMMED
Sbjct: 241 FERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERK--SALSVDALEKMMED 300

[Close]
BLAST of Cucsa.173410 vs. Swiss-Prot
Match: TIC40_ARATH (Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.4e-44
Identity = 112/250 (44.80%), Postives = 145/250 (58.00%), Query Frame = 1 

Query: 22  KPVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSY-VGSPLFWVGVGVGLSALFTW---- 81
           K  ++ FA++ SS+    ++SV  PSV +PPPSS  +GSPLFW+GVGVGLSALF++    
Sbjct: 69  KQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLSALFSYVTSN 128

Query: 82  --KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISPSVSE---PAVS 141
             KYAMQ A KTMM+QMN+QNS  +N    SGSPFP P    T    SP  S+      +
Sbjct: 129 LKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGAT 188

Query: 142 IDVTATKVEEEPVTNVK-----------------SRTENMEAKKFAFVDVSPEETDQKSP 201
           +DVTATKVE  P T  K                 +  E  E K +AF D+SPEET ++SP
Sbjct: 189 VDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESP 248

Query: 202 FKE--DATDADVSKSAQPTEELPQNGAASKQAYNGSDGSQF--SRKPGSVLSVEAVEKMM 241
           F    + ++ +  K  +  E++ QNGA        S+  Q     K G  LSVEA+EKMM
Sbjct: 249 FSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMM 308

[Close]
BLAST of Cucsa.173410 vs. TrEMBL
Match: A0A0A0KR61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314340 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 1 

Query: 80  MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISPSVSEPAVSIDVTATKV 139
           MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFP PPTFATGTTISPSVSEPAVSIDVTATKV
Sbjct: 1   MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPIPPTFATGTTISPSVSEPAVSIDVTATKV 60

Query: 140 EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEELPQNGA 199
           EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPT+ELPQNGA
Sbjct: 61  EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTQELPQNGA 120

Query: 200 ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY
Sbjct: 121 ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 161

[Close]
BLAST of Cucsa.173410 vs. TrEMBL
Match: A0A0B0NDB5_GOSAR (Protein TIC 40, chloroplastic OS=Gossypium arboreum GN=F383_18459 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 132/227 (58.15%), Postives = 164/227 (72.25%), Query Frame = 1 

Query: 22  KPVAERFATVSSSTTSNDSSSVGV-PSVSIPPPSSYVGSPLFWVGVGVGLSALFTWKYAM 81
           K + ERFA++SSS+ +  +SSVGV P  ++PPPSS +GSPLFW+GVGVGLSALFTWKYAM
Sbjct: 67  KSIDERFASISSSS-NQQTSSVGVNPYPTVPPPSSQIGSPLFWIGVGVGLSALFTWKYAM 126

Query: 82  QQAFKTMMSQMNSQNSPMSNPTLSSGS--PFPTPPTFATGTTISPSVSEP-AVSIDVTAT 141
           QQAFKTMM QMN+QN+  +N    SGS  PFPTPP+    T+ SPS S+  +V++DV AT
Sbjct: 127 QQAFKTMMGQMNTQNNQFANAAFPSGSPFPFPTPPSPGPVTSPSPSSSQKNSVTVDVPAT 186

Query: 142 KVEEEPVTNV----KSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEE 201
           KVE  PVT+     KS TE  E KK+AFVDVSPEET QKS F ED  +   S +AQ  ++
Sbjct: 187 KVEAAPVTDPSTKGKSETEKAEPKKYAFVDVSPEETVQKSAF-EDVAETSSSNNAQIPKD 246

Query: 202 LPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           +  NG ASKQ  +   G Q + K G  LSV+A+EKM+EDPTVQKM+Y
Sbjct: 247 VSDNGTASKQDASAFGGYQSTGKAGPGLSVDALEKMLEDPTVQKMVY 291

[Close]
BLAST of Cucsa.173410 vs. TrEMBL
Match: A0A0D2PWM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G088300 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 7.1e-57
Identity = 133/233 (57.08%), Postives = 164/233 (70.39%), Query Frame = 1 

Query: 22  KPVAERFATVSSSTTSNDSSSVGV-PSVSIPPPSSYVGSPLFWVGVGVGLSALFTW---- 81
           K + ERFA++SSS+ +  +SSVGV P  ++PPPSS +GSPLFW+GVGVGLSALFTW    
Sbjct: 67  KSIDERFASISSSS-NQQTSSVGVNPYPTVPPPSSQIGSPLFWIGVGVGLSALFTWVASS 126

Query: 82  --KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGS--PFPTPPTFATGTTISPSVSE-PAVS 141
             KYAMQQAFKTMM QMN+QN+  +N    SGS  PFPTPP+    T+ SPS S+  +V+
Sbjct: 127 LKKYAMQQAFKTMMGQMNTQNNQFANAAFPSGSPFPFPTPPSPGPVTSPSPSSSQKTSVT 186

Query: 142 IDVTATKVEEEPV----TNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKS 201
           +DV ATKVE  PV    T  KS TE  E KK+AFVDVSPEET QKS F ED  +   S +
Sbjct: 187 VDVPATKVEAAPVIDPSTKGKSETEKAEPKKYAFVDVSPEETVQKSAF-EDVAETSSSNN 246

Query: 202 AQPTEELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           AQ  +++  NGAASKQ  +   G Q + K G  LSV+A+EKM+EDPTVQKM+Y
Sbjct: 247 AQIPKDVSDNGAASKQDTSAFGGYQSTGKAGPGLSVDALEKMLEDPTVQKMVY 297

[Close]
BLAST of Cucsa.173410 vs. TrEMBL
Match: A0A061EFW1_THECC (Hydroxyproline-rich glycoprotein family protein isoform 3 OS=Theobroma cacao GN=TCM_019125 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 9.2e-57
Identity = 132/227 (58.15%), Postives = 156/227 (68.72%), Query Frame = 1 

Query: 26  ERFATVSSSTTSNDSSSVGV-PSVSIPPPSSYVGSPLFWVGVGVGLSALFTW------KY 85
           ERFA++SSS+ S  +SSVGV P+ ++PPPSS +GSPLFW+GVGVGLSALFTW      KY
Sbjct: 78  ERFASISSSS-SQQTSSVGVNPNPTVPPPSSQIGSPLFWIGVGVGLSALFTWVASSLKKY 137

Query: 86  AMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISPS-VSEPAVSIDVTAT 145
           AMQQAFKTMM QMN+QN+  SN     GSPFP P   + G   SPS  S+ AV++DV AT
Sbjct: 138 AMQQAFKTMMGQMNTQNNQFSNAAFPLGSPFPFPAPPSPGPVTSPSPSSQTAVTVDVPAT 197

Query: 146 KVE----EEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEE 205
           KVE      P T VKS TE  E KK+AFVDVSPEET QKS F EDA     S + Q  ++
Sbjct: 198 KVEAAPATAPATEVKSETETAEPKKYAFVDVSPEETVQKSAF-EDAAGISSSNNTQFPKD 257

Query: 206 LPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           +  NGAASKQ      GSQ +      LSV+A+EKMMEDPTVQKM+Y
Sbjct: 258 VSDNGAASKQDAGAFGGSQSTGSADPALSVDALEKMMEDPTVQKMVY 302

[Close]
BLAST of Cucsa.173410 vs. TrEMBL
Match: A0A061ENK7_THECC (Hydroxyproline-rich glycoprotein family protein isoform 2 OS=Theobroma cacao GN=TCM_019125 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 9.2e-57
Identity = 132/227 (58.15%), Postives = 156/227 (68.72%), Query Frame = 1 

Query: 26  ERFATVSSSTTSNDSSSVGV-PSVSIPPPSSYVGSPLFWVGVGVGLSALFTW------KY 85
           ERFA++SSS+ S  +SSVGV P+ ++PPPSS +GSPLFW+GVGVGLSALFTW      KY
Sbjct: 78  ERFASISSSS-SQQTSSVGVNPNPTVPPPSSQIGSPLFWIGVGVGLSALFTWVASSLKKY 137

Query: 86  AMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISPS-VSEPAVSIDVTAT 145
           AMQQAFKTMM QMN+QN+  SN     GSPFP P   + G   SPS  S+ AV++DV AT
Sbjct: 138 AMQQAFKTMMGQMNTQNNQFSNAAFPLGSPFPFPAPPSPGPVTSPSPSSQTAVTVDVPAT 197

Query: 146 KVE----EEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEE 205
           KVE      P T VKS TE  E KK+AFVDVSPEET QKS F EDA     S + Q  ++
Sbjct: 198 KVEAAPATAPATEVKSETETAEPKKYAFVDVSPEETVQKSAF-EDAAGISSSNNTQFPKD 257

Query: 206 LPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           +  NGAASKQ      GSQ +      LSV+A+EKMMEDPTVQKM+Y
Sbjct: 258 VSDNGAASKQDAGAFGGSQSTGSADPALSVDALEKMMEDPTVQKMVY 302

[Close]
BLAST of Cucsa.173410 vs. TAIR10
Match: AT5G16620.1 (AT5G16620.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-45
Identity = 112/250 (44.80%), Postives = 145/250 (58.00%), Query Frame = 1 

Query: 22  KPVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSY-VGSPLFWVGVGVGLSALFTW---- 81
           K  ++ FA++ SS+    ++SV  PSV +PPPSS  +GSPLFW+GVGVGLSALF++    
Sbjct: 69  KQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLSALFSYVTSN 128

Query: 82  --KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISPSVSE---PAVS 141
             KYAMQ A KTMM+QMN+QNS  +N    SGSPFP P    T    SP  S+      +
Sbjct: 129 LKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGAT 188

Query: 142 IDVTATKVEEEPVTNVK-----------------SRTENMEAKKFAFVDVSPEETDQKSP 201
           +DVTATKVE  P T  K                 +  E  E K +AF D+SPEET ++SP
Sbjct: 189 VDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESP 248

Query: 202 FKE--DATDADVSKSAQPTEELPQNGAASKQAYNGSDGSQF--SRKPGSVLSVEAVEKMM 241
           F    + ++ +  K  +  E++ QNGA        S+  Q     K G  LSVEA+EKMM
Sbjct: 249 FSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMM 308

[Close]
BLAST of Cucsa.173410 vs. NCBI nr
Match: gi|449462371|ref|XP_004148914.1| (PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 418.3 bits (1074), Expect = 9.0e-114
Identity = 219/237 (92.41%), Postives = 222/237 (93.67%), Query Frame = 1 

Query: 15  LFSSLTWKP-----VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 74
           L S+L  +P     VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG
Sbjct: 52  LASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 111

Query: 75  LSALFTW------KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISP 134
           LSALFTW      KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFP PPTFATGTTISP
Sbjct: 112 LSALFTWVASYLKKYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPIPPTFATGTTISP 171

Query: 135 SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 194
           SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD
Sbjct: 172 SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 231

Query: 195 VSKSAQPTEELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           VSKSAQPT+ELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY
Sbjct: 232 VSKSAQPTQELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 288

[Close]
BLAST of Cucsa.173410 vs. NCBI nr
Match: gi|778702049|ref|XP_011655127.1| (PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 2.7e-110
Identity = 216/237 (91.14%), Postives = 219/237 (92.41%), Query Frame = 1 

Query: 15  LFSSLTWKP-----VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 74
           L S+L  +P     VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG
Sbjct: 52  LASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 111

Query: 75  LSALFTW------KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISP 134
           LSALFTW      KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFP PPTFATGTTISP
Sbjct: 112 LSALFTWVASYLKKYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPIPPTFATGTTISP 171

Query: 135 SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 194
           SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD
Sbjct: 172 SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 231

Query: 195 VSKSAQPTEELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           VSKSAQPT+E   NGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY
Sbjct: 232 VSKSAQPTQE---NGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 285

[Close]
BLAST of Cucsa.173410 vs. NCBI nr
Match: gi|659126325|ref|XP_008463124.1| (PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 406.8 bits (1044), Expect = 2.7e-110
Identity = 213/237 (89.87%), Postives = 218/237 (91.98%), Query Frame = 1 

Query: 15  LFSSLTWKP-----VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 74
           L S+L  +P     VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG
Sbjct: 52  LASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 111

Query: 75  LSALFTW------KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISP 134
           LSALFTW      KYAMQQAFKTMMSQMNSQNSPMSNP LSSGSPFP PPTFATGTT++P
Sbjct: 112 LSALFTWVASYLKKYAMQQAFKTMMSQMNSQNSPMSNPKLSSGSPFPIPPTFATGTTVTP 171

Query: 135 SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 194
           SVSEPA SIDVTATKVEEEPVTNVK+ TENMEAKKFAFVDVSPEETDQKSPFKEDATDAD
Sbjct: 172 SVSEPAASIDVTATKVEEEPVTNVKTGTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 231

Query: 195 VSKSAQPTEELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           VSKSAQPTEELPQNGAASKQAY GSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY
Sbjct: 232 VSKSAQPTEELPQNGAASKQAYIGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 288

[Close]
BLAST of Cucsa.173410 vs. NCBI nr
Match: gi|659126327|ref|XP_008463125.1| (PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 395.2 bits (1014), Expect = 8.2e-107
Identity = 210/237 (88.61%), Postives = 215/237 (90.72%), Query Frame = 1 

Query: 15  LFSSLTWKP-----VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 74
           L S+L  +P     VAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG
Sbjct: 52  LASALNRRPNHRILVAERFATVSSSTTSNDSSSVGVPSVSIPPPSSYVGSPLFWVGVGVG 111

Query: 75  LSALFTW------KYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISP 134
           LSALFTW      KYAMQQAFKTMMSQMNSQNSPMSNP LSSGSPFP PPTFATGTT++P
Sbjct: 112 LSALFTWVASYLKKYAMQQAFKTMMSQMNSQNSPMSNPKLSSGSPFPIPPTFATGTTVTP 171

Query: 135 SVSEPAVSIDVTATKVEEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 194
           SVSEPA SIDVTATKVEEEPVTNVK+ TENMEAKKFAFVDVSPEETDQKSPFKEDATDAD
Sbjct: 172 SVSEPAASIDVTATKVEEEPVTNVKTGTENMEAKKFAFVDVSPEETDQKSPFKEDATDAD 231

Query: 195 VSKSAQPTEELPQNGAASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           VSKSAQPTEE   NGAASKQAY GSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY
Sbjct: 232 VSKSAQPTEE---NGAASKQAYIGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 285

[Close]
BLAST of Cucsa.173410 vs. NCBI nr
Match: gi|700195710|gb|KGN50887.1| (hypothetical protein Csa_5G314340 [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 1.8e-82
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 1 

Query: 80  MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPTPPTFATGTTISPSVSEPAVSIDVTATKV 139
           MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFP PPTFATGTTISPSVSEPAVSIDVTATKV
Sbjct: 1   MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPIPPTFATGTTISPSVSEPAVSIDVTATKV 60

Query: 140 EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEELPQNGA 199
           EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPT+ELPQNGA
Sbjct: 61  EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTQELPQNGA 120

Query: 200 ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 241
           ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY
Sbjct: 121 ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 161

The following BLAST results are available for this feature:
BLAST of Cucsa.173410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TIC40_PEA2.1e-4647.58Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1[more]
TIC40_ARATH3.4e-4444.80Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1[more]
BLAST of Cucsa.173410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR61_CUCSA1.3e-8298.76Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314340 PE=4 SV=1[more]
A0A0B0NDB5_GOSAR1.3e-5858.15Protein TIC 40, chloroplastic OS=Gossypium arboreum GN=F383_18459 PE=4 SV=1[more]
A0A0D2PWM9_GOSRA7.1e-5757.08Uncharacterized protein OS=Gossypium raimondii GN=B456_001G088300 PE=4 SV=1[more]
A0A061EFW1_THECC9.2e-5758.15Hydroxyproline-rich glycoprotein family protein isoform 3 OS=Theobroma cacao GN=... [more]
A0A061ENK7_THECC9.2e-5758.15Hydroxyproline-rich glycoprotein family protein isoform 2 OS=Theobroma cacao GN=... [more]
BLAST of Cucsa.173410 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16620.11.9e-4544.80 hydroxyproline-rich glycoprotein family protein[more]
BLAST of Cucsa.173410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462371|ref|XP_004148914.1|9.0e-11492.41PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis sativus][more]
gi|778702049|ref|XP_011655127.1|2.7e-11091.14PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis sativus][more]
gi|659126325|ref|XP_008463124.1|2.7e-11089.87PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo][more]
gi|659126327|ref|XP_008463125.1|8.2e-10788.61PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo][more]
gi|700195710|gb|KGN50887.1|1.8e-8298.76hypothetical protein Csa_5G314340 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0009987 cellular process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.173410.1Cucsa.173410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 32..185
score: 3.0
NoneNo IPR availablePANTHERPTHR22904:SF373PROTEIN TIC 40, CHLOROPLASTICcoord: 32..185
score: 3.0