Cp4.1LG01g19580 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g19580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein TIC 40, chloroplastic
Location	Cp4.1LG01 : 16727531 .. 16736309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGCCCGCGAGCTGATGATCCAAACCAACGACTGAAATCAAGCCCAGCGGGGAGCAGTAAGCTCTGCACAGAAAAGTTGCACGCTCTCCACACACCCTGAACCAAGCCGAAATCTCTTCAAGGATTCCAAGCCTATCTTCATCTTCTTCTTCTTCTTCCCTTAATCATTCGCTGTTTATCATCCGACCAATCTGAGAAGAAATCAATGGACAGACTCACTTTAGCCCTAGCATCTCCTCCCAAGTTTGTGTTTCTCGGCTGCTCTTCTACTCCTACCTTCTCCACTGCCACCAGAACCAATCAATTATGCGGAACCAGGCGCTTGGCTACGTCCTGGATTAAATCTCGTCCCAGAATTTATGCTTCTGCCGTTAATCGTCGATCCAACCAACGTATTGTCGGTAATAGTCGAATTCATTGTATAAATTGATATTTGAAAGTAGCTTGTAGTCAGTCTTCAGTAATTCACTCGGCTTCGCATTTCGTTGTTCTCTGTTTTGTTTGTTATCGTCAAAAGCAGTGGCTGAACGGTTTGCGAGTGTTTCTTCTTCGACAACCATCAATGAATCGTCTTCTGTTGGTGTTCCATCAGTTTCGGTTCCTCCCCCTTCCTCTTATGTGTAAATTTTCGTTCCCTTATCTTTCAATTGTATGTTTCTGAAGTTCATTCTACACTTTTTTCCTGAGAAGAAACAGATTTGATTGAGTGGATATGACACAAACTATGTTCAGTTTTTAAGATGCAACTGGCAGCTTTGTTCTGTTCTGTTTTCTTTTTATTTTATAACTCTTTAATATTCTGGTTGTCTACTTTTTTAGAGGGTCGCCTCTCTTTTGGGTGGGTGTTGGTGTTGGGCTTTCAGCATTATTTACTTGGGTGAGTGAGAATCAAATCTATATGTCTAAACTGCATATTTTTCTTATGCGGATGTGATTAAATTTATCAAGAAGCTTTTAGCCCGAATGTTCTTTTAACAAGTTCTAAAAATTTCAGGTGGCTTCTTACTTGAAGGTGAGTTTTCTTCAACAAGGTATGGGGATATAATTGTGCCTTATAAACTGTCCTTCGGGTGCTGTCGTTCCTGCTAGAGTCGGTCTTCCATAGCACTCTCTTAGCTTGCTCTGATATTCTTCTTAAAATGTCTATTCTCTCTGCTTGGAGCTCTATACGATATCAGTCATTGAACGTAAGAAAAACATATGCTATCATTTTGGATTTCGGTATCATGACTCTGACGTTTCTTTGTGTATTAACAAAAGATGTAGGACTTACATGGGTCTAAGAGAGCCTAGTTACAGTTGAGGGAAATTCGGGAGTCTCCTTGTCTCCTACGTGTTACTACTTATCTTTTACATAAGCATACGTCACATCTTTCTACTACTATAGTACTACTTATATTAGTTTTCTTTCAACCCTTTCCATTCTTCCATTAATACGTTGTCTCTTCATACTTACCCATTGACTAAGTTCTATCATTATTTAATAAATTGATCCCCACCCTTTGCACGCTTTCTTTTGTAAACAGTAAGGATCGGTGGCCTATCCCAAAGTTCTGTTTCTCTTATAAAAAGATTCATGTGTTCAATGAACCTAGTACAAATTACCTATCTGTGTGTTTTTCTTGTATATAAATTACAACTTGGATCATTACTAACCTTGACCTATCTGTGTGTTTCTTTGTTCCTATGAATTTCATTTCAATTGTGTTTTAGAAATATGCTATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAATGGCCCAATGAGTAATCCTTCACTATCCGGATCACCTTTTCCAATACCTCCAACATTTGGGACTGGCAGAGCAGTTTCTCCATCTGTTTCTGAACCTGCTCCATCAATTGATGTACCAGCAACAAAAGTTGAAGACAAACCAGTTACTACTGCCAAAATTGTGACAGAGGACAAGGAAGCAAAGAATTTTGGTACCCAAGGATTCTCCTCCAATTACATTATTTCAATATGATGGTTTTCTTGATTGATCAATTATGATTTGATTTTGATTTATGCGCTCCAAAGAGAATACTCTCTTGACTGGAGGCTCGAATGTTTGGGATAAATTGCAAGGTTTGCAGTTTTGTACTTCTGATGAGCTTAAAACTAAAAAAACTTCCAGGGTTTTATTGTTTTTTTTCTTCTTGGTATTGGGGTGTGAACAACGCGTTCCATAATCTTCTGGATTAGTTTGTGAAGTGCCCTATATGGATACCTGGAACTACGGATGAATTTTTTTTATGGTTTATGCTCTTTCTTGTTCCTTTTCTAATAATTACGAACCATTCAAGTACTTAATTGCCTGTGTGGATGTATATTTGTTAGTTTTTGTAGATGTCTTTTGAGGAATTTTAGAAATTCCATTTCTGCTGTCTAGGTGCAACATTCCACCACTTTGCTTGTAGTAAGATTCTTAGATAAGTAGGTCCTTAATAACAAGAGATATGTGAAAGGAGGTTTGGCAATCTCCACCCCTTAATGTCAAGGCTTCAATTCTTTTGGAATAGGCTTCACAAAATCTAGTGTAATAGGTGATAAGTCCCATTCTCATTTTTTGCTTGTACCTGCACATTAGTATGCAATCATTGTAAATATATGCACATATATTTCAATTGCAGGTGTTCCAGCCAGTCTATGTGCTTCTTCTAAGCTAACTTTATAAGATATTAATTTGAATTTTCTGGCATTTCGTATCAAGACTTGGAAGGATTTATAATATCTACTTTTCACAGCTTTTGTAGACGTTGCTCCAGAAGAAATGGAGCAAAAGAGTCCGTTCAAAGAAGATACAGTGGACTCGAGTGTTCCAAAGAGTGCTCAGCCTACTGAGGAAGTAAGTTTGTTTTTGGTAGTTGTGATGCCTTGCGTTGATATGTTGATTTACTCTTTGATTTATTTATGAAGCTTCCACAGAATGGAGCTGCTTCTAAGCCGGCTTTTGATGGTTCAGAGGGATCACAATTCAGCCGTAAGTTGATAATAATCAATGATAATATTTCTTCGTTAGTGTTATCCACCCTCTCCGTTTTCTCTCTGTACAAGTCTTAAATAGAAAGTAAAGCCAAATAGATGATAACTTAAAGTCCAGTCTTGAAAGATAAGAGCTTAGGAAAATACTTTATCTACATATGGCACGACCCTTATAAAATTTAAGCCATTATGTGATATTTCTGTCTCATACAAATAATTTATTTTATATTTTTTTGATCTTGTTATTTTTCTGCTGCTAGGTGCGCAATTCATGATTGAATGTATATTATCACAGTTTAGTTATTACATAAAATTTAATATAGTCTCTGACATTCTTGTCTATTAGGAAAACCTGGCTCAGTCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAGAAGATGATATATCCGTATGCAGCTTTTACTCTTTATCTACTTCATCATTTTGGAATTTTTATGATTTGGTTTCCTCATATATATGGATGTTTATATCAGTGAAAACTCATTGCTGTATTCGAAATAAAAATGTAAAAGTAATGTGTAGAAATAGACATTATTTCACACATTTGAATGCGAAGAACTTGCAATACATCAAGCCAATTTGTTAATAATAATCCAAGGATGGGGACTTTGATCCCTGTAATTTTCCAGGTTCTGTAGTTCCAAACTGTACTTGCTATATAATAGACTTCCATAGAGGATAATATAGAGGAGTTCTTCACGATCTCTTGGAGATTTAAGCCTGATTTTCATACTGGATATTGCCCGAGCTAGCCCACTTATTTTTTATTTATTTATTTTAATGATAGGAATTACTATTCCACCTGGAAAATTGACTACCTTCATGCATCCTTCCTCAAGGAAATCTCATAATTTTTTCAGTAGTCCTGATGATATTTATTGACATTTTGCATAAGTAGGAATATTAGAGAGGATGAAATAAGTGTAGCGCTGCCACCTTTTGAAAAGTAACTGCTCTTCCATCCCTTTCATCTTCTCTTTCTCACAGGCGGTGGAGTTAACAACACCCCTCTTTTCAAACTCAGATGATATCTTTGAGAAACCCTGTTTCTAAAATTTCTCCTAGATTTTTGGAGTTTCACTGCTGAAATCATCAACTTGGGGTGTTCTTATCAACCAGCTCAAGGATAGGCTTTCTGATTTTCACCTATTTAATGTGTCTTAAGGCTCATCTTGGAAGTTTCAGCAGTAGGAGACACTCCGGGGAAATTCAAATGAAAGCTGCTTTAACTGGGTTAATGGTTCTAGTGCTGTCTATAGTTGCTCTCTCATTTTCTCCAAGTCAGTGAGGATCCTAACAACTGCCTTTCCTGCCTGTTGATAAAAAACTTCTTTTACCATTAGTTATTCTGAAAGAAAGAATGATGTACATGTATTTTCATGTCTTGTCATAGGGCCAGAATCAGATACAATGATTTCCTTGCACCAATTCTTTCTTTTCATTAAATTGAGGTTTTGATTAGAAGACTTTGCATTATGCATGAATGTTAATTTTGATTTCGGCCATGTCCTGGGCATTCAATGCCCTCTTATTTTCTAGGTGCATATCTTTTCTGCCTTTTGGGATCTTTTATTGCTTGTCTTGTTGAATATACATGTGGCTTGTATGATCATTTTCTGAAGCAGCTTAGAGCTAAATTTGGTTCCTGAATACTTGAAATTGTGTTGATATCTGAAAGAAAGTGTACTTGTTTTTCATCTTACAGCCATTTGCCCGAGGAGATGAGAAATCCAGAAACATTTAAGTGTAAGTCTATTGATTATTACATCATCAGTCATTATGCCTTCTATTAAGCAATGAGAAAGGAGGATATAAATCAATAAGATGAAGAAAAGGGCCCATGGGCGTTTCTGATGAAGATAGAAGAAGAAACACTGAGAAGGGGAGGGTGGGTATGCTGGAAGTAAATAAGAAGAAAATTAATTAACCAATAAGACAAAACATACGTGTGAACAAAGTGGGCGCAGTGAATGCATGGAAGAAATTAACTTTACCAAGTGATTATAACAAGATGCAAGACAAGTTTTTCAATGCTATTTTAATGTTCTAGAATAAAAATCTTAGAGGGTCGCATATTTGGTAGTATTATTCTTCAGCAGCCTCTCAGATATATAAAGGTGATAGATACAATAAATAGCCTACACTTTTTACCCTTTTTTATTACTACCATTTAAATTCAGATTATGGATCTTATTAACAACATTGGAATTTCTAAACATTTATTTTAAACTTGATAACCTAGAATAAATTTCTGGAGTTCCTGTGATTTTTTTGGGGTCATACTTGGAACTTGGAAGATGGGTAACATATGCTTGGTTTGGAATTTTACATGATCAGTTACTTTATTGTTTAATCTCCAACATGGCATCCCTTATTAATTGAACTATATTGAATAGGGATGATGCAAAATCCACAGTATCGTCAACAATTAGAAGAAATGCTGTAAGTACAGTTTCTTTATGTTTGTTTTTCTTTTTTAAAAAGTAATTATTTAATTCTGTCATAGGCTTCTTATATATCATCTTAGTTTGAGAGCCATCTTTGCTGTTGCTTTCTTTACTTTTGTGTGCTTGCAAACTTCTGAAACCATACCTGAGTCTTGTATTTGATTTTATTGACATATGCAATTGCAGAACATGCTTGGTGATATTGGAATCTAATGTTTTTCCTATTCAGCATGATTTGTAATTTAAATGCATAATGCAATTTATCATGTGTTCCATATTATTTTAAGCTAATATTATATCTAAAGTTCATTTTTTATGCCTTGTAAATCATTTCATAATTTTCAATGAAAGCTTAGTTTCTTATTAAAAAAAATTATATCTTAGGTTCGTGCAAAGGGTCACTTTTATCTGGTTTCTATAGACCCTTTCATAGTCTATGTATAGCTTATTTTCTTCAGACGGCCTTCCTATGCTCTCCATTTCTCAGTCCCAAGCAAGTTTTTGAACCAAACATTTGCCATTCAGTCAGTTAAAGAACTCCGATTTAATCTAAAAGTAGGAAGGGGATTTGAACTTGAAGTATGTTTGAGTTAGCTTTTAATACTTCTGTCATAACATTGACTTGTGGGTTGCTACTAAGAATAAGATTTTCTAAACTTTCGCCCCTTCTTTTGAACTTATGTCAACTTGATGTTGATACTTCGTGGAGATAGTATTGTTGCCTCATGGTAAGTGGCTTTTGGAGTGGCCTGGTTGGAGCCATAGAGGATTATAGGAAAGGTCTTAGTAGATAGATTGAAAATGGTCTTTGGCCATACCATAACCCATAACTCAACTCTTAAGCCTTAAGTAGGTTGTTTGAGTTATTTATTTAACAAAAAAAACCATGGTGGTCGCCTGCTTGTAATGTTAAAGTCCTATGAGTTTTTCAACATTTGAATATTGTAAGATCAAGTGACCTTAGTTACTCACAGTCATTGAGAAGATATAAAAAAGTTATTCTTTTTAATTTATAGAGTTTAATGATCTTTATTTGCGGAGTACTTAATATAGAATTTTATTTTCATTTCATATATGCCATACATGCTAAATTGTAATCGCACTACTTCTAGTTCTAGTTTCAGTGCCTTCTCATTTTATTTTTTTATCATATTTTCTTTTAGACTCCTTGGTGTGAGAGGAATGGGAGGATTTTTAATGATCGACACTCCTCCTTTGGTAGTTTTATAGATTTGCTCCTTTCTAATGCTCTCTTTTCGTGTAAATGTGTAGTCCTTTCAGATTTTCAGTATTTCTTTCTCCATTACGAATTGGCGAGATTTCATGTAGAGTTGCTAATATGTTTGAAGTATATGCTATAACACCATCTTCTAACGTGATGTTTTTTCTTCTTTAATTATTAATCTCAGTAACAATATGAGTGGAAGCCCTCAATTGGACGACAGCCTCATGGATTCCTTGAAAAACTTCGATCTAAACAGCCCTGAAGTTAAGCAGCAATTTGGTCAGTCAAATCGTTCTTTTTTGCTTTTGTACATTCTGCTTGATTACTATTCTCTGGTCGGCATTTACTATGGCATCATATCTTTCATATATAGATGAAATGCGGATGATGTATATGATTTTCTGTGATTGATGCAATCATATAGTGTCAGTCTTAAAAATATGGACCGACATTTTGTTGTTTTGTTAAAATAATTGATAAGCTCAGAAGTCTGTCAACTTTGCTTCGGTTTTGGTTTTCTGATGCTAATGTTTGTTTCTCTTCTTACAGCAATGCTGAAATTGATCTAAATATATTCTTTCAATTGAATTGCAAGATTCGGTTCATGCATACTCATAATTAATAGTTTCATTCATTATATCTATTATATGTTTCTGTGAGTTCATTGGTGTCTGGTTGGAAATGAAAATTAGAACGGTTTGTTTTTAAGAATAAAAAACAGTTTTTTTCCACATATAAAAGACCACAAAAACAAAATCTTATTGTTTTCACATGTTTTTCAATTAATTATTCATTTATAAATATTACAAATAATTGAGCCTACTCTTTCTTTCTGCAACTATGACAGATCAAATTGGGCTTACACCTGACCAAGTTATTTCAAAGATTATGGCCAATCCAGAAATCGCTATGGCATTTCAAAATCCAAGAGTTCAGGCAGCCATCATGGAAGTATGTTTTACTTAAGGTTAATACATTTTTGGTTCAAATCTAATATTTTGATTTTACTTTTTGCAGTGTTCACAAAATCCACTGAGTATAACAAAGTATCAAAATGACAAAGAGGTACATGAAATTGATACTGTTCTTGTACTTTCATCTTTCATGCGGTTTATATAGAACTCGAACGAAGTAGAGTTATGGCGACTACATGTTGACATAAACTCAGAATTGCATTTTACTGATTCTGGTGGTGGGAGGGTTCTTTTTGTAGATTGTTAATATATATTTTATATCCTTAACGTGCTCATTCTCAGCTGCACTTTGCAGCTTTCTAGTTTCATTCAGTTAACGAAATAAAAAACATCATCACTCTACATTCTGTTCTTTCACATGTGCAGTAAATTGTTTCAATTTGTCTTTGTTGAATACCCCTCATGTAATATTTTGGGCTTATTTTTCTTATCCTTTTGGCAGATCGCATTGATTTCCATTACTTCATTTCTTTGAATATGTATCAATATGATTCACTCTAAACAAATTCTAGTGTTATACTCCGCTGATATCGTTCCTTTTCTGTTTCGGTGCGCTTGTAGGTCATGGACGTTTTCAATAAAATATCAGAACTATTCCCTGGAGTTTCTGGGTCACCATGATAATTGTAACTATTTTGGTTGCTAAAGAGTACATGATAAGATAAGAATCAAATATGGAAAGATTGAGCAGGCTTCCTTCCCGTCCATTGTGAAATAAGTTGGAGAAGATAGTCATCTCTGCCTTTTTCGTAGTGAAGTTAGCTGAGTCGGTCTCGCCTGCTTCGATTACATGAGTTATATTGGATTTTTCGGGTGAGCTAATTCTTTTTTCCCTTCCAAAACCAAGTTTCTTTTTCCGAGTATTACCATCTGGAGGTCATGTATTTATTAGTGGCTTTGCATTTAATCAACTTCGTAGGAACCTGTTCTTCATATAGTGGTTAGATTGATTGTAAGAGACTTTTAAGCTCATTGATATATCAAGGTAGTCAATGCAGTTTATAAGTAATTTTGGCATATTCTTATTTCCCTTTCAATTGAATCACATTATTGGAAGTATTGCTGAGTAAAAATTAGAAGTGAGATATATGTTTGA

mRNA sequence

TGAGCCCGCGAGCTGATGATCCAAACCAACGACTGAAATCAAGCCCAGCGGGGAGCAGTAAGCTCTGCACAGAAAAGTTGCACGCTCTCCACACACCCTGAACCAAGCCGAAATCTCTTCAAGGATTCCAAGCCTATCTTCATCTTCTTCTTCTTCTTCCCTTAATCATTCGCTGTTTATCATCCGACCAATCTGAGAAGAAATCAATGGACAGACTCACTTTAGCCCTAGCATCTCCTCCCAAGTTTGTGTTTCTCGGCTGCTCTTCTACTCCTACCTTCTCCACTGCCACCAGAACCAATCAATTATGCGGAACCAGGCGCTTGGCTACGTCCTGGATTAAATCTCGTCCCAGAATTTATGCTTCTGCCGTTAATCGTCGATCCAACCAACGTATTGTCGTGGCTGAACGGTTTGCGAGTGTTTCTTCTTCGACAACCATCAATGAATCGTCTTCTGTTGGTGTTCCATCAGTTTCGGTTCCTCCCCCTTCCTCTTATGTAGGGTCGCCTCTCTTTTGGGTGGGTGTTGGTGTTGGGCTTTCAGCATTATTTACTTGGGTGGCTTCTTACTTGAAGGTGAGTTTTCTTCAACAAGGTATGGGGATATAATTGTGCCTTATAAACTGTCCTTCGGGTGCTGTCGTTCCTGCTAGAGTCGGTCTTCCATAGCACTCTCTTAGCTTGCTCTGATATTCTTCTTAAAATGTCTATTCTCTCTGCTTGGAGCTCTATACGATATCAGTCATTGAACGTAAGAAAAACATATGCTATCATTTTGGATTTCGGTATCATGACTCTGACGTTTCTTTGTGTATTAACAAAAGATGTAGGACTTACATGGGTCTAAGAGAGCCTAGTTACAGTTGAGGGAAATTCGGGAGTCTCCTTGTCTCCTACGTGTTACTACTTATCTTTTACATAAGCATACGTCACATCTTTCTACTACTATAGTACTACTTATATTAGTTTTCTTTCAACCCTTTCCATTCTTCCATTAATACGTTGTCTCTTCATACTTACCCATTGACTAAGTTCTATCATTATTTAATAAATTGATCCCCACCCTTTGCACGCTTTCTTTTGTAAACAGTAAGGATCGGTGGCCTATCCCAAAGTTCTGTTTCTCTTATAAAAAGATTCATGTGTTCAATGAACCTAGTACAAATTACCTATCTGTGTGTTTTTCTTGTATATAAATTACAACTTGGATCATTACTAACCTTGACCTATCTGTGTGTTTCTTTGTTCCTATGAATTTCATTTCAATTGTGTTTTAGAAATATGCTATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAATGGCCCAATGAGTAATCCTTCACTATCCGGATCACCTTTTCCAATACCTCCAACATTTGGGACTGGCAGAGCAGTTTCTCCATCTGTTTCTGAACCTGCTCCATCAATTGATGTACCAGCAACAAAAGTTGAAGACAAACCAGTTACTACTGCCAAAATTGTGACAGAGGACAAGGAAGCAAAGAATTTTGCTTTTGTAGACGTTGCTCCAGAAGAAATGGAGCAAAAGAGTCCGTTCAAAGAAGATACAGTGGACTCGAGTGTTCCAAAGAGTGCTCAGCCTACTGAGGAACTTCCACAGAATGGAGCTGCTTCTAAGCCGGCTTTTGATGGTTCAGAGGGATCACAATTCAGCCGAAAACCTGGCTCAGTCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAGAAGATGATATATCCCCATTTGCCCGAGGAGATGAGAAATCCAGAAACATTTAAGTGGATGATGCAAAATCCACAGTATCGTCAACAATTAGAAGAAATGCTTAACAATATGAGTGGAAGCCCTCAATTGGACGACAGCCTCATGGATTCCTTGAAAAACTTCGATCTAAACAGCCCTGAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGACCAAGTTATTTCAAAGATTATGGCCAATCCAGAAATCGCTATGGCATTTCAAAATCCAAGAGTTCAGGCAGCCATCATGGAATGTTCACAAAATCCACTGAGTATAACAAAGTATCAAAATGACAAAGAGAACTCGAACGAAGTAGAGTTATGGCGACTACATGTTGACATAAACTCAGAATTGCATTTTACTGATTCTGGTGGTGGGAGGGTCATGGACGTTTTCAATAAAATATCAGAACTATTCCCTGGAGTTTCTGGGTCACCATGATAATTGTAACTATTTTGGTTGCTAAAGAGTACATGATAAGATAAGAATCAAATATGGAAAGATTGAGCAGGCTTCCTTCCCGTCCATTGTGAAATAAGTTGGAGAAGATAGTCATCTCTGCCTTTTTCGTAGTGAAGTTAGCTGAGTCGGTCTCGCCTGCTTCGATTACATGAGTTATATTGGATTTTTCGGGTGAGCTAATTCTTTTTTCCCTTCCAAAACCAAGTTTCTTTTTCCGAGTATTACCATCTGGAGGTCATGTATTTATTAGTGGCTTTGCATTTAATCAACTTCGTAGGAACCTGTTCTTCATATAGTGGTTAGATTGATTGTAAGAGACTTTTAAGCTCATTGATATATCAAGGTAGTCAATGCAGTTTATAAGTAATTTTGGCATATTCTTATTTCCCTTTCAATTGAATCACATTATTGGAAGTATTGCTGAGTAAAAATTAGAAGTGAGATATATGTTTGA

Coding sequence (CDS)

ATGCAACAAGCTTTCAAGACGATGATGTCTCAAATGAATTCTCAAAATGGCCCAATGAGTAATCCTTCACTATCCGGATCACCTTTTCCAATACCTCCAACATTTGGGACTGGCAGAGCAGTTTCTCCATCTGTTTCTGAACCTGCTCCATCAATTGATGTACCAGCAACAAAAGTTGAAGACAAACCAGTTACTACTGCCAAAATTGTGACAGAGGACAAGGAAGCAAAGAATTTTGCTTTTGTAGACGTTGCTCCAGAAGAAATGGAGCAAAAGAGTCCGTTCAAAGAAGATACAGTGGACTCGAGTGTTCCAAAGAGTGCTCAGCCTACTGAGGAACTTCCACAGAATGGAGCTGCTTCTAAGCCGGCTTTTGATGGTTCAGAGGGATCACAATTCAGCCGAAAACCTGGCTCAGTCTTATCAGTGGAAGCTGTGGAGAAAATGATGGAAGATCCGACAGTGCAGAAGATGATATATCCCCATTTGCCCGAGGAGATGAGAAATCCAGAAACATTTAAGTGGATGATGCAAAATCCACAGTATCGTCAACAATTAGAAGAAATGCTTAACAATATGAGTGGAAGCCCTCAATTGGACGACAGCCTCATGGATTCCTTGAAAAACTTCGATCTAAACAGCCCTGAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGACCAAGTTATTTCAAAGATTATGGCCAATCCAGAAATCGCTATGGCATTTCAAAATCCAAGAGTTCAGGCAGCCATCATGGAATGTTCACAAAATCCACTGAGTATAACAAAGTATCAAAATGACAAAGAGAACTCGAACGAAGTAGAGTTATGGCGACTACATGTTGACATAAACTCAGAATTGCATTTTACTGATTCTGGTGGTGGGAGGGTCATGGACGTTTTCAATAAAATATCAGAACTATTCCCTGGAGTTTCTGGGTCACCATGA

Protein sequence

MQQAFKTMMSQMNSQNGPMSNPSLSGSPFPIPPTFGTGRAVSPSVSEPAPSIDVPATKVEDKPVTTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTEELPQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVISKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHFTDSGGGRVMDVFNKISELFPGVSGSP

Homology

[Close]

BLAST of Cp4.1LG01g19580 vs. Swiss-Prot
Match: TIC40_PEA (Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.4e-82
Identity = 187/338 (55.33%), Postives = 220/338 (65.09%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSLS-GSPFPIPPTFGTGRAV-------------SPSVS 60
           MQQAFK+MM QMN+QN P  + + S G PFP P    +G A              + S S
Sbjct: 128 MQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGFAGNQSQATSTRSAS 187

Query: 61  EPAPSIDVPATKVEDKPVTTAKIVTEDKEAKN----FAFVDVAPEEMEQKSPFK--EDTV 120
           +   ++D+PATKVE         V E+ E KN     AFVDV+PEE  QK+ F+  +D  
Sbjct: 188 QSTVTVDIPATKVEAAAPAPDINVKEEVEVKNEPKKSAFVDVSPEETVQKNAFERFKDVD 247

Query: 121 DSSVPKSAQPTEELPQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIY 180
           +SS  K A+   E  QNG   K  F  S  S   RK  S LSV+A+EKMMEDPTVQ+M+Y
Sbjct: 248 ESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERK--SALSVDALEKMMEDPTVQQMVY 307

Query: 181 PHLPEEMRNPETFKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQ 240
           P+LPEEMRNP TFKWMMQNP+YRQQLE MLNNM G  + D  +MD+LKNFDLNSP+VKQQ
Sbjct: 308 PYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSRMMDTLKNFDLNSPDVKQQ 367

Query: 241 FDQIGLTPDQVISKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELW 300
           FDQIGL+P +VISKIMANP++AMAFQNPRVQAAIM+CSQNP+SI KYQNDKE        
Sbjct: 368 FDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMSIVKYQNDKE-------- 427

Query: 301 RLHVDINSELHFTDSGGGRVMDVFNKISELFPGVSGSP 319
                              VMDVFNKISELFPGVSG P
Sbjct: 428 -------------------VMDVFNKISELFPGVSGPP 436

[Close]

BLAST of Cp4.1LG01g19580 vs. Swiss-Prot
Match: TIC40_ARATH (Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.1e-79
Identity = 182/341 (53.37%), Postives = 222/341 (65.10%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSL-SGSPFPIPPTFGTGRAVSPSVSEPAPS---IDVPA 60
           MQ A KTMM+QMN+QN   +N    SGSPFP P    T  A SP  S+   S   +DV A
Sbjct: 134 MQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGATVDVTA 193

Query: 61  TKVE-----------------DKPVTTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKE-- 120
           TKVE                 DKP    +   E KE KN+AF D++PEE  ++SPF    
Sbjct: 194 TKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESPFSNYA 253

Query: 121 DTVDSSVPKSAQPTEELPQNGAASKPAFDGSEGSQF--SRKPGSVLSVEAVEKMMEDPTV 180
           +  +++ PK  +  E++ QNGA        SE  Q     K G  LSVEA+EKMMEDPTV
Sbjct: 254 EVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMMEDPTV 313

Query: 181 QKMIYPHLPEEMRNPETFKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSP 240
           QKM+YP+LPEEMRNPETFKWM++NPQYRQQL++MLNNMSGS + D  + D+LKNFDLNSP
Sbjct: 314 QKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDLNSP 373

Query: 241 EVKQQFDQIGLTPDQVISKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSN 300
           EVKQQF+QIGLTP++VISKIM NP++AMAFQNPRVQAA+MECS+NP++I KYQNDKE   
Sbjct: 374 EVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKE--- 433

Query: 301 EVELWRLHVDINSELHFTDSGGGRVMDVFNKISELFPGVSG 317
                                   VMDVFNKIS+LFPG++G
Sbjct: 434 ------------------------VMDVFNKISQLFPGMTG 447

[Close]

BLAST of Cp4.1LG01g19580 vs. TrEMBL
Match: A0A0D2PWM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G088300 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.2e-90
Identity = 199/326 (61.04%), Postives = 231/326 (70.86%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSL-SGSPFPIPPTFGTGRAVSPSVS---EPAPSIDVPA 60
           MQQAFKTMM QMN+QN   +N +  SGSPFP P     G   SPS S   + + ++DVPA
Sbjct: 131 MQQAFKTMMGQMNTQNNQFANAAFPSGSPFPFPTPPSPGPVTSPSPSSSQKTSVTVDVPA 190

Query: 61  TKVEDKPV----TTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTE 120
           TKVE  PV    T  K  TE  E K +AFVDV+PEE  QKS F ED  ++S   +AQ  +
Sbjct: 191 TKVEAAPVIDPSTKGKSETEKAEPKKYAFVDVSPEETVQKSAF-EDVAETSSSNNAQIPK 250

Query: 121 ELPQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 180
           ++  NGAASK       G Q + K G  LSV+A+EKM+EDPTVQKM+YP+LPEEMRNPET
Sbjct: 251 DVSDNGAASKQDTSAFGGYQSTGKAGPGLSVDALEKMLEDPTVQKMVYPYLPEEMRNPET 310

Query: 181 FKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVI 240
           FKWM+QNPQYRQQL++MLNNM GS + D+ +MDSLKNFDLNSPEVKQQFDQIGLTP++VI
Sbjct: 311 FKWMLQNPQYRQQLQDMLNNMGGSSEWDNRMMDSLKNFDLNSPEVKQQFDQIGLTPEEVI 370

Query: 241 SKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHF 300
           SKIMANPE+AMAFQNPRVQAAIM+CSQNPLSI KYQNDKE                    
Sbjct: 371 SKIMANPEVAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKE-------------------- 428

Query: 301 TDSGGGRVMDVFNKISELFPGVSGSP 319
                  VMDVFNKISELFPGV+G P
Sbjct: 431 -------VMDVFNKISELFPGVTGPP 428

[Close]

BLAST of Cp4.1LG01g19580 vs. TrEMBL
Match: A0A0B0NDB5_GOSAR (Protein TIC 40, chloroplastic OS=Gossypium arboreum GN=F383_18459 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.4e-90
Identity = 199/326 (61.04%), Postives = 232/326 (71.17%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSN---PSLSGSPFPIPPTFGTGRAVSPSVSEP-APSIDVPA 60
           MQQAFKTMM QMN+QN   +N   PS S  PFP PP+ G   + SPS S+  + ++DVPA
Sbjct: 125 MQQAFKTMMGQMNTQNNQFANAAFPSGSPFPFPTPPSPGPVTSPSPSSSQKNSVTVDVPA 184

Query: 61  TKVEDKPVTT----AKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTE 120
           TKVE  PVT      K  TE  E K +AFVDV+PEE  QKS F ED  ++S   +AQ  +
Sbjct: 185 TKVEAAPVTDPSTKGKSETEKAEPKKYAFVDVSPEETVQKSAF-EDVAETSSSNNAQIPK 244

Query: 121 ELPQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 180
           ++  NG ASK       G Q + K G  LSV+A+EKM+EDPTVQKM+YP+LPEEMRNPET
Sbjct: 245 DVSDNGTASKQDASAFGGYQSTGKAGPGLSVDALEKMLEDPTVQKMVYPYLPEEMRNPET 304

Query: 181 FKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVI 240
           FKWM+QNPQYRQQL++MLNNM GS + D+ +MDSLKNFDLNSPEVKQQFDQIGLTP++VI
Sbjct: 305 FKWMLQNPQYRQQLQDMLNNMGGSSEWDNRMMDSLKNFDLNSPEVKQQFDQIGLTPEEVI 364

Query: 241 SKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHF 300
           SKIMANPE+AMAFQNPRVQAAIM+CSQNPLSI KYQNDKE                    
Sbjct: 365 SKIMANPEVAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKE-------------------- 422

Query: 301 TDSGGGRVMDVFNKISELFPGVSGSP 319
                  VMDVFNKISELFPGV+G P
Sbjct: 425 -------VMDVFNKISELFPGVTGPP 422

[Close]

BLAST of Cp4.1LG01g19580 vs. TrEMBL
Match: B9T0Z8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0371600 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-89
Identity = 208/344 (60.47%), Postives = 236/344 (68.60%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSLS-GSPFPIP-------------PTFGTGR------- 60
           MQQAFK+MM+QMN+QN   +NP+ S GS FP P             PT  T R       
Sbjct: 147 MQQAFKSMMNQMNTQNDQFNNPAFSPGSAFPFPTPPASVPASSPPFPTSSTSRPATSPSY 206

Query: 61  -----AVSPSV-SEPAPSIDVPATKVEDKPVTTAKIVTE-DKEAKNFAFVDVAPEEMEQK 120
                + SPSV S+PA ++DV ATKVE   VT AK   E  KE K +AFVDV+PEE   K
Sbjct: 207 PTSSASTSPSVASQPAVTVDVSATKVEAASVTDAKDEAEITKEPKKYAFVDVSPEETFPK 266

Query: 121 SPFK--EDTVDSSVPKSAQPTEELPQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMM 180
           SPFK  ED +++S  K  Q   E+ QNGAAS        GSQ +RK GS LSVEA+EKMM
Sbjct: 267 SPFKSNEDILETSTSKDTQFNPEVLQNGAASNQGAADFTGSQSTRKAGSGLSVEALEKMM 326

Query: 181 EDPTVQKMIYPHLPEEMRNPETFKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNF 240
           EDPTVQKM+YP+LPEEMRNP TFKWM+QNPQYRQQLEEMLNNMSG+ + D+ +MDSLKNF
Sbjct: 327 EDPTVQKMVYPYLPEEMRNPSTFKWMLQNPQYRQQLEEMLNNMSGTGEWDNRMMDSLKNF 386

Query: 241 DLNSPEVKQQFDQIGLTPDQVISKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQND 300
           DL+SPEVKQQFDQIGLTP++VISKIMANPEIAMAFQNPRVQ AIM+CSQNPLSI KYQND
Sbjct: 387 DLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQQAIMDCSQNPLSIAKYQND 446

Query: 301 KENSNEVELWRLHVDINSELHFTDSGGGRVMDVFNKISELFPGV 315
           KE                           VMDVFNKISELFPGV
Sbjct: 447 KE---------------------------VMDVFNKISELFPGV 463

[Close]

BLAST of Cp4.1LG01g19580 vs. TrEMBL
Match: A3QSJ7_RICCO (Plastid Tic40 OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-89
Identity = 208/344 (60.47%), Postives = 236/344 (68.60%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSLS-GSPFPIP-------------PTFGTGR------- 60
           MQQAFK+MM+QMN+QN   +NP+ S GS FP P             PT  T R       
Sbjct: 142 MQQAFKSMMNQMNTQNDQFNNPAFSPGSAFPFPTPPASVPASSPPFPTSSTSRPATSPSY 201

Query: 61  -----AVSPSV-SEPAPSIDVPATKVEDKPVTTAKIVTE-DKEAKNFAFVDVAPEEMEQK 120
                + SPSV S+PA ++DV ATKVE   VT AK   E  KE K +AFVDV+PEE   K
Sbjct: 202 PTSSASTSPSVASQPAVTVDVSATKVEAASVTDAKDEAEITKEPKKYAFVDVSPEETFPK 261

Query: 121 SPFK--EDTVDSSVPKSAQPTEELPQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMM 180
           SPFK  ED +++S  K  Q   E+ QNGAAS        GSQ +RK GS LSVEA+EKMM
Sbjct: 262 SPFKSNEDILETSTSKDTQFNPEVLQNGAASNQGAADFTGSQSTRKAGSGLSVEALEKMM 321

Query: 181 EDPTVQKMIYPHLPEEMRNPETFKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNF 240
           EDPTVQKM+YP+LPEEMRNP TFKWM+QNPQYRQQLEEMLNNMSG+ + D+ +MDSLKNF
Sbjct: 322 EDPTVQKMVYPYLPEEMRNPSTFKWMLQNPQYRQQLEEMLNNMSGTGEWDNRMMDSLKNF 381

Query: 241 DLNSPEVKQQFDQIGLTPDQVISKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQND 300
           DL+SPEVKQQFDQIGLTP++VISKIMANPEIAMAFQNPRVQ AIM+CSQNPLSI KYQND
Sbjct: 382 DLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQQAIMDCSQNPLSIAKYQND 441

Query: 301 KENSNEVELWRLHVDINSELHFTDSGGGRVMDVFNKISELFPGV 315
           KE                           VMDVFNKISELFPGV
Sbjct: 442 KE---------------------------VMDVFNKISELFPGV 458

[Close]

BLAST of Cp4.1LG01g19580 vs. TrEMBL
Match: A0A061ENK7_THECC (Hydroxyproline-rich glycoprotein family protein isoform 2 OS=Theobroma cacao GN=TCM_019125 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 2.4e-89
Identity = 198/324 (61.11%), Postives = 226/324 (69.75%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSLS-GSPFPIPPTFGTGRAVSPSVS-EPAPSIDVPATK 60
           MQQAFKTMM QMN+QN   SN +   GSPFP P     G   SPS S + A ++DVPATK
Sbjct: 138 MQQAFKTMMGQMNTQNNQFSNAAFPLGSPFPFPAPPSPGPVTSPSPSSQTAVTVDVPATK 197

Query: 61  VEDKPVTT----AKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTEEL 120
           VE  P T      K  TE  E K +AFVDV+PEE  QKS F ED    S   + Q  +++
Sbjct: 198 VEAAPATAPATEVKSETETAEPKKYAFVDVSPEETVQKSAF-EDAAGISSSNNTQFPKDV 257

Query: 121 PQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFK 180
             NGAASK       GSQ +      LSV+A+EKMMEDPTVQKM+YP+LPEEMRNPETFK
Sbjct: 258 SDNGAASKQDAGAFGGSQSTGSADPALSVDALEKMMEDPTVQKMVYPYLPEEMRNPETFK 317

Query: 181 WMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVISK 240
           WM+QNPQYRQQL++MLNNM GS + D+ +MDSLKNFDLNSP+VKQQFDQIGLTP++VISK
Sbjct: 318 WMLQNPQYRQQLQDMLNNMGGSTEWDNRMMDSLKNFDLNSPDVKQQFDQIGLTPEEVISK 377

Query: 241 IMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHFTD 300
           IMANPE+AMAFQNPRVQAAIM+CSQNPLSI KYQNDKE                      
Sbjct: 378 IMANPEVAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKE---------------------- 433

Query: 301 SGGGRVMDVFNKISELFPGVSGSP 319
                VMDVFNKISELFPGV+GSP
Sbjct: 438 -----VMDVFNKISELFPGVTGSP 433

[Close]

BLAST of Cp4.1LG01g19580 vs. TAIR10
Match: AT5G16620.1 (AT5G16620.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 298.1 bits (762), Expect = 6.3e-81
Identity = 182/341 (53.37%), Postives = 222/341 (65.10%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSL-SGSPFPIPPTFGTGRAVSPSVSEPAPS---IDVPA 60
           MQ A KTMM+QMN+QN   +N    SGSPFP P    T  A SP  S+   S   +DV A
Sbjct: 134 MQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQSQSQSSGATVDVTA 193

Query: 61  TKVE-----------------DKPVTTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKE-- 120
           TKVE                 DKP    +   E KE KN+AF D++PEE  ++SPF    
Sbjct: 194 TKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDISPEETTKESPFSNYA 253

Query: 121 DTVDSSVPKSAQPTEELPQNGAASKPAFDGSEGSQF--SRKPGSVLSVEAVEKMMEDPTV 180
           +  +++ PK  +  E++ QNGA        SE  Q     K G  LSVEA+EKMMEDPTV
Sbjct: 254 EVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGLSVEALEKMMEDPTV 313

Query: 181 QKMIYPHLPEEMRNPETFKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSP 240
           QKM+YP+LPEEMRNPETFKWM++NPQYRQQL++MLNNMSGS + D  + D+LKNFDLNSP
Sbjct: 314 QKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDKRMTDTLKNFDLNSP 373

Query: 241 EVKQQFDQIGLTPDQVISKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSN 300
           EVKQQF+QIGLTP++VISKIM NP++AMAFQNPRVQAA+MECS+NP++I KYQNDKE   
Sbjct: 374 EVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKE--- 433

Query: 301 EVELWRLHVDINSELHFTDSGGGRVMDVFNKISELFPGVSG 317
                                   VMDVFNKIS+LFPG++G
Sbjct: 434 ------------------------VMDVFNKISQLFPGMTG 447

[Close]

BLAST of Cp4.1LG01g19580 vs. NCBI nr
Match: gi|449462371|ref|XP_004148914.1| (PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 8.5e-128
Identity = 252/319 (79.00%), Postives = 269/319 (84.33%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSL-SGSPFPIPPTFGTGRAVSPSVSEPAPSIDVPATKV 60
           MQQAFKTMMSQMNSQN PMSNP+L SGSPFPIPPTF TG  +SPSVSEPA SIDV ATKV
Sbjct: 128 MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPIPPTFATGTTISPSVSEPAVSIDVTATKV 187

Query: 61  EDKPVTTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTEELPQNGA 120
           E++PVT  K  TE+ EAK FAFVDV+PEE +QKSPFKED  D+ V KSAQPT+ELPQNGA
Sbjct: 188 EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTQELPQNGA 247

Query: 121 ASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 180
           ASK A++GS+GSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN
Sbjct: 248 ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 307

Query: 181 PQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVISKIMANP 240
           P YRQQLEEMLNNMSGSPQ D  LMDSLKNFDL+SPEVKQQFDQIGLTP++VISKIMANP
Sbjct: 308 PLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANP 367

Query: 241 EIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHFTDSGGGR 300
           EIAMAFQNPRVQAAIM+CSQNPLSITKYQNDKE                           
Sbjct: 368 EIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKE--------------------------- 419

Query: 301 VMDVFNKISELFPGVSGSP 319
           VMDVFNKISELFPGVSG+P
Sbjct: 428 VMDVFNKISELFPGVSGAP 419

[Close]

BLAST of Cp4.1LG01g19580 vs. NCBI nr
Match: gi|659126325|ref|XP_008463124.1| (PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 464.5 bits (1194), Expect = 1.4e-127
Identity = 253/319 (79.31%), Postives = 267/319 (83.70%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSL-SGSPFPIPPTFGTGRAVSPSVSEPAPSIDVPATKV 60
           MQQAFKTMMSQMNSQN PMSNP L SGSPFPIPPTF TG  V+PSVSEPA SIDV ATKV
Sbjct: 128 MQQAFKTMMSQMNSQNSPMSNPKLSSGSPFPIPPTFATGTTVTPSVSEPAASIDVTATKV 187

Query: 61  EDKPVTTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTEELPQNGA 120
           E++PVT  K  TE+ EAK FAFVDV+PEE +QKSPFKED  D+ V KSAQPTEELPQNGA
Sbjct: 188 EEEPVTNVKTGTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEELPQNGA 247

Query: 121 ASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 180
           ASK A+ GS+GSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN
Sbjct: 248 ASKQAYIGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 307

Query: 181 PQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVISKIMANP 240
           P YRQQLEEMLNNMSGSPQ D  LMDSLKNFDL+SPEVKQQFDQIGLTP++VISKIMANP
Sbjct: 308 PLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANP 367

Query: 241 EIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHFTDSGGGR 300
           EIAMAFQNPRVQAAIM+CSQNPLSITKYQNDKE                           
Sbjct: 368 EIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKE--------------------------- 419

Query: 301 VMDVFNKISELFPGVSGSP 319
           VMDVFNKISELFPGVSG+P
Sbjct: 428 VMDVFNKISELFPGVSGAP 419

[Close]

BLAST of Cp4.1LG01g19580 vs. NCBI nr
Match: gi|778702049|ref|XP_011655127.1| (PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 2.6e-124
Identity = 249/319 (78.06%), Postives = 266/319 (83.39%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSLS-GSPFPIPPTFGTGRAVSPSVSEPAPSIDVPATKV 60
           MQQAFKTMMSQMNSQN PMSNP+LS GSPFPIPPTF TG  +SPSVSEPA SIDV ATKV
Sbjct: 128 MQQAFKTMMSQMNSQNSPMSNPTLSSGSPFPIPPTFATGTTISPSVSEPAVSIDVTATKV 187

Query: 61  EDKPVTTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTEELPQNGA 120
           E++PVT  K  TE+ EAK FAFVDV+PEE +QKSPFKED  D+ V KSAQPT+E   NGA
Sbjct: 188 EEEPVTNVKSRTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTQE---NGA 247

Query: 121 ASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 180
           ASK A++GS+GSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN
Sbjct: 248 ASKQAYNGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 307

Query: 181 PQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVISKIMANP 240
           P YRQQLEEMLNNMSGSPQ D  LMDSLKNFDL+SPEVKQQFDQIGLTP++VISKIMANP
Sbjct: 308 PLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANP 367

Query: 241 EIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHFTDSGGGR 300
           EIAMAFQNPRVQAAIM+CSQNPLSITKYQNDKE                           
Sbjct: 368 EIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKE--------------------------- 416

Query: 301 VMDVFNKISELFPGVSGSP 319
           VMDVFNKISELFPGVSG+P
Sbjct: 428 VMDVFNKISELFPGVSGAP 416

[Close]

BLAST of Cp4.1LG01g19580 vs. NCBI nr
Match: gi|659126327|ref|XP_008463125.1| (PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 453.0 bits (1164), Expect = 4.4e-124
Identity = 250/319 (78.37%), Postives = 264/319 (82.76%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSLS-GSPFPIPPTFGTGRAVSPSVSEPAPSIDVPATKV 60
           MQQAFKTMMSQMNSQN PMSNP LS GSPFPIPPTF TG  V+PSVSEPA SIDV ATKV
Sbjct: 128 MQQAFKTMMSQMNSQNSPMSNPKLSSGSPFPIPPTFATGTTVTPSVSEPAASIDVTATKV 187

Query: 61  EDKPVTTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTEELPQNGA 120
           E++PVT  K  TE+ EAK FAFVDV+PEE +QKSPFKED  D+ V KSAQPTEE   NGA
Sbjct: 188 EEEPVTNVKTGTENMEAKKFAFVDVSPEETDQKSPFKEDATDADVSKSAQPTEE---NGA 247

Query: 121 ASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 180
           ASK A+ GS+GSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN
Sbjct: 248 ASKQAYIGSDGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQN 307

Query: 181 PQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVISKIMANP 240
           P YRQQLEEMLNNMSGSPQ D  LMDSLKNFDL+SPEVKQQFDQIGLTP++VISKIMANP
Sbjct: 308 PLYRQQLEEMLNNMSGSPQWDGRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANP 367

Query: 241 EIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHFTDSGGGR 300
           EIAMAFQNPRVQAAIM+CSQNPLSITKYQNDKE                           
Sbjct: 368 EIAMAFQNPRVQAAIMDCSQNPLSITKYQNDKE--------------------------- 416

Query: 301 VMDVFNKISELFPGVSGSP 319
           VMDVFNKISELFPGVSG+P
Sbjct: 428 VMDVFNKISELFPGVSGAP 416

[Close]

BLAST of Cp4.1LG01g19580 vs. NCBI nr
Match: gi|823122627|ref|XP_012471943.1| (PREDICTED: protein TIC 40, chloroplastic [Gossypium raimondii])

HSP 1 Score: 340.5 bits (872), Expect = 3.2e-90
Identity = 199/326 (61.04%), Postives = 231/326 (70.86%), Query Frame = 1


Query: 1   MQQAFKTMMSQMNSQNGPMSNPSL-SGSPFPIPPTFGTGRAVSPSVS---EPAPSIDVPA 60
           MQQAFKTMM QMN+QN   +N +  SGSPFP P     G   SPS S   + + ++DVPA
Sbjct: 131 MQQAFKTMMGQMNTQNNQFANAAFPSGSPFPFPTPPSPGPVTSPSPSSSQKTSVTVDVPA 190

Query: 61  TKVEDKPV----TTAKIVTEDKEAKNFAFVDVAPEEMEQKSPFKEDTVDSSVPKSAQPTE 120
           TKVE  PV    T  K  TE  E K +AFVDV+PEE  QKS F ED  ++S   +AQ  +
Sbjct: 191 TKVEAAPVIDPSTKGKSETEKAEPKKYAFVDVSPEETVQKSAF-EDVAETSSSNNAQIPK 250

Query: 121 ELPQNGAASKPAFDGSEGSQFSRKPGSVLSVEAVEKMMEDPTVQKMIYPHLPEEMRNPET 180
           ++  NGAASK       G Q + K G  LSV+A+EKM+EDPTVQKM+YP+LPEEMRNPET
Sbjct: 251 DVSDNGAASKQDTSAFGGYQSTGKAGPGLSVDALEKMLEDPTVQKMVYPYLPEEMRNPET 310

Query: 181 FKWMMQNPQYRQQLEEMLNNMSGSPQLDDSLMDSLKNFDLNSPEVKQQFDQIGLTPDQVI 240
           FKWM+QNPQYRQQL++MLNNM GS + D+ +MDSLKNFDLNSPEVKQQFDQIGLTP++VI
Sbjct: 311 FKWMLQNPQYRQQLQDMLNNMGGSSEWDNRMMDSLKNFDLNSPEVKQQFDQIGLTPEEVI 370

Query: 241 SKIMANPEIAMAFQNPRVQAAIMECSQNPLSITKYQNDKENSNEVELWRLHVDINSELHF 300
           SKIMANPE+AMAFQNPRVQAAIM+CSQNPLSI KYQNDKE                    
Sbjct: 371 SKIMANPEVAMAFQNPRVQAAIMDCSQNPLSIAKYQNDKE-------------------- 428

Query: 301 TDSGGGRVMDVFNKISELFPGVSGSP 319
                  VMDVFNKISELFPGV+G P
Sbjct: 431 -------VMDVFNKISELFPGVTGPP 428

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIC40_PEA	2.4e-82	55.33	Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1	[more]
TIC40_ARATH	1.1e-79	53.37	Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g19580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2PWM9_GOSRA	2.2e-90	61.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G088300 PE=4 SV=1	[more]
A0A0B0NDB5_GOSAR	6.4e-90	61.04	Protein TIC 40, chloroplastic OS=Gossypium arboreum GN=F383_18459 PE=4 SV=1	[more]
B9T0Z8_RICCO	1.4e-89	60.47	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0371600 PE=4 SV=1	[more]
A3QSJ7_RICCO	1.4e-89	60.47	Plastid Tic40 OS=Ricinus communis PE=2 SV=1	[more]
A0A061ENK7_THECC	2.4e-89	61.11	Hydroxyproline-rich glycoprotein family protein isoform 2 OS=Theobroma cacao GN=...	[more]

BLAST of Cp4.1LG01g19580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16620.1	6.3e-81	53.37	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Cp4.1LG01g19580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462371\|ref\|XP_004148914.1\|	8.5e-128	79.00	PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|659126325\|ref\|XP_008463124.1\|	1.4e-127	79.31	PREDICTED: protein TIC 40, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|778702049\|ref\|XP_011655127.1\|	2.6e-124	78.06	PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659126327\|ref\|XP_008463125.1\|	4.4e-124	78.37	PREDICTED: protein TIC 40, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|823122627\|ref\|XP_012471943.1\|	3.2e-90	61.04	PREDICTED: protein TIC 40, chloroplastic [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006636	STI1_HS-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0008150	biological_process
biological_process	GO:0071840	cellular component organization or biogenesis
biological_process	GO:0009987	cellular process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0051649	establishment of localization in cell
biological_process	GO:0015031	protein transport
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0009657	plastid organization
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0031897	Tic complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0044425	membrane part
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19580.1	Cp4.1LG01g19580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 152..186 score: 5.1E-4coord: 228..267 score: 8.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g19580	Cucsa.173410	Cucumber (Gy14) v1	cgycpeB0477
Cp4.1LG01g19580	CmaCh04G022540	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g19580	Cla009102	Watermelon (97103) v1	cpewmB441
Cp4.1LG01g19580	Csa5G314340	Cucumber (Chinese Long) v2	cpecuB423
Cp4.1LG01g19580	MELO3C025065	Melon (DHL92) v3.5.1	cpemeB359
Cp4.1LG01g19580	ClCG01G008270	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g19580	CSPI05G13300	Wild cucumber (PI 183967)	cpecpiB443
Cp4.1LG01g19580	Lsi09G008740	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g19580	MELO3C025065.2	Melon (DHL92) v3.6.1	cpemedB419
Cp4.1LG01g19580	CsaV3_5G020190	Cucumber (Chinese Long) v3	cpecucB0525
Cp4.1LG01g19580	CsGy5G013290	Cucumber (Gy14) v2	cgybcpeB632
Cp4.1LG01g19580	Carg18303	Silver-seed gourd	carcpeB0747
Cp4.1LG01g19580	Carg01426	Silver-seed gourd	carcpeB1158

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g19580	Cp4.1LG13g05680	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g19580	Cucumber (Gy14) v1	cgycpeB0578
Cp4.1LG01g19580	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g19580	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g19580	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g19580	Wild cucumber (PI 183967)	cpecpiB427
Cp4.1LG01g19580	Wax gourd	cpewgoB0490