Cucsa.169980 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.169980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDNA polymerase I-like protein
Locationscaffold01174 : 217839 .. 220345 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAATCAGAGAAATCCGGCGGTGGCAGAACGTGATTGGACATAGCATAACATGACAGCAGTGGCTCTGACTTGACCGACCGACAGTAAAGAAGCAAAGCCCTAGAAAGACTCGTGAAAAAGAGGGCAAAAAATGTCTTAAACTGACGAACTCTCACTACAAGAAATAGGGGTTCTCACGACGTGGCAAATCGTCGGCATATATGTCAAACGACATCGGTAAAGAATCTCCCAACGTATATAGTATCGTCGGGAAGAAAGTCGACAATACTTCGTCGGCATATATATCGGAATAGATTGCATCTGCCAACGTGAAGGGCCAGAAACGACGATGGAGGACAGTGGCTGTCAGTGGAGGACAGAGGTGGCGACACAAAAACTTAGGGTTTTTCTGTTTTTAAGAAAATTATGGTTTTTAGGATTTCATTGTTATTTCTGCTCTGATACCAACTTAAATTTGCGAAAGTTATTGTTTTCCCTTATTATTAAAAATATGCAAGGTAGGTTTTCTTATAAGGAGAAAGACCTTTTACAAATAAGAAAAGAATAAAAGCAATAATGGTTAAATATTTAAACAATAATAAGTATGTACAAGTATAGGAATGTGTCTTACTTTGTGATAATTGCATTTACAATATAATTCAAATGGTGTGATACTTTTTGAACTGATCCATCCGTTCTTGCAAATGCAACAAATACTTATTTCTTTATTTTCTTTCCTTTTTCTTGTAGATGTTGGTAACAAACGCTGAACAGGCTATCTTGAGCAAGGACCTGGTAATTTCCCTTGGCTTTTATTGGGGTACCTTTGTAGATTTTTTTTCTTTTTCTTTTTCTTTTCTTTACTGTTTAACCCTTTTTCTCCTTGGTACTCTACTTTTTATGGTCTTAATCAATAACCAGCATTTTGGAAAGCGTGACTCTGAAGATGGCCGTCATTGGCATGTTGTTCATGGCCCTCAACTTTAATTGCTTTTTTTTTTTTTTGTACTAAGAAATATGTTCCGAAAACGGTAATTTTCTAAACAAATATTCATTTAATCCCTTGAAATTGTTGACGGGTTAGGTTAGGCAGGGGAGTGGAATTCTAAGCGAGTACAATTCATCATTCCTTCTTATCATATAAATGCAAAAACCTATATTTGACTTGATATATATTGGCATCCACCATGTTACTTGTTACATAATCCATATCATTTATGTTGCAGGCAACCTTGCGATCTGATCTTCCATTCTATATGGTACCATTTACCACCAGAGACCTTTTATTCAAGAAACCGGAGGTTTGTGCTAATAATGCTAGGCACTCTTGACTTGATTTTATACCTTTCAATCTGGTGAAGCATTGCTAGAACTTATTAAAACTTTAGGGGACAATTTGACCCACCAATTGGGTCTCAATTTGGCAATTTATTGATTTTAAAAATGACACTCCAGGGTAAAAGTTTGTCCATGAATATTGTTAAAGTACTGATAATTAACTTAACTATAACTTATAAACTTAAGCTTTTGGGTTGATGGGTGGATTTAACATAGTATCAAGCAAAAGGTTTTGTGTGTTTGAACCTTTTAATGTCATTTTTTTAAATCAATATTGATTTTCAGTTGTTGGGCCTTTAACAAATTGTTCAATTGAGGGAGAGTTTGGAGTATTGATATAATTAAATAGTATAATCGAAAAACAGTGAGATTTGGATATTTAGTTATTTGTAAATCTGTTCACTTTTCAAATGCTAGATGGTATTTATTCTTCTCTAGTTCCAGTTTGTTTACCGTTTTAAATATATATATCAACAATGAAATAGTCTTTTGAAATTTTGCTTAAGGGTGAAAAAATGAAATTAAAGTTCCAATGTGTACGCATATCCTCTTTGATCTACCGTTCTCTTTATAAACGGATTTAAATATTTTCACTGAATTCCCTAGTTTCCTTTCCGTGTGATTTGTACAACTTTCTTTCTGGTCCCAAATGCCATAGAATATTGGATTATATAGATCACTTCAGTAGCATTCAACTCTAAATTGTGACTCTGATGTTGTTTCTTGTGTAGGATAATGGGGAGAAATTCACAAGCCTCTTAACTGCTATTGGTGCATATGCAGAAAGATTTTCTGCTGATCCAATCATTAGGAGAGTACTCTACTTATGGAAGAAGCTAGACAAAAATTAGTTATTGGTAATCAATTAATCTATGTCTCCACTTTGTTTCTTTTAAATTTGGTTTTGTTGTGTGGTTAGAGATATAAGTAGAGCTTAGAAATCACATCATTCTTTATATATATATATATATACATATGAATAACCCCTTCTCCTTGTTCTTCATGTCCTTTTAACAAAGAAAATGTGAAACACGAGAAGTTTCAGCTTGATGAAATAACTCAACTGGCGTCTTCTCCCCTTGGATTGCTTCTTTGAACACTCCATTCATGTGAATGGTTTTTTGGAAGATGGAGGCATTTTGTGGTTGAAGTATATATATGTACATGCATATTAAATTTATCCCAAC

mRNA sequence

gaaaaatcagagaaatccggcggtggcagaacgtgattggacatagcataacatgacagcagtggctctgacttgaccgaccgacagtaaagaagcaaagccctagaaagactcgtgaaaaagagggcaaaaaatgtcttaaactgaCGAACTCTcactacaagaaataggggttctcacgacgtggcaaatcgtcggcatatatgtcaaacgacatcggtaaagaatctcccaacgtatatagtatcgtcgggaagaaagtcgacaatacttcgtcggCATATATATCGGAATAGATTGCATCTGCCAACGTGAAGGGCCAGAAAcgacgatggaggacagtggctgtcagtggaggacagagATGTTGGTAACAAACGCTGAACAGGCTATCTTGAGCAAGGACCTGGCAACCTTGCGATCTGATCTTCCATTCTATATGGTACCATTTACCACCAGAGACCTTTTATTCAAGAAACCGGAGGATAATGGGGAGAAATTCACAAGCCTCTTAACTGCTATTGGTGCATATGCAGAAAGATTTTCTGCTGATCCAATCATTAGGAGAGTACTCTACTTATGGAAGAAGCTAGACAAAAATTAGTTATTGGTAATCAATTAATCTATGTCTCCACTTTGTTTCTTTTAAATTTGGTTTTGTTGTGTGGTTAGAGATATAAGTAGAGCTTAGAAATCACATCATTCTTtatatatatatatatatacatatGAATAACCCCTTCTCCTTGTTCTTCATGTCCTTTTAACAAAGAAAATGTGAAACACGAGAAGTTTCAGCTTGATGAAATAACTCAACTGGCGTCTTCTCCCCTTGGATTGCTTCTTTGAACACTCCATTCATGTGAATGGTTTTTTGGAAGATGGAGGCATTTTGTGGTTGAAGTATATATATGTACATGCATATTAAATTTATCCCAAC

Coding sequence (CDS)

ATGGAGGACAGTGGCTGTCAGTGGAGGACAGAGATGTTGGTAACAAACGCTGAACAGGCTATCTTGAGCAAGGACCTGGCAACCTTGCGATCTGATCTTCCATTCTATATGGTACCATTTACCACCAGAGACCTTTTATTCAAGAAACCGGAGGATAATGGGGAGAAATTCACAAGCCTCTTAACTGCTATTGGTGCATATGCAGAAAGATTTTCTGCTGATCCAATCATTAGGAGAGTACTCTACTTATGGAAGAAGCTAGACAAAAATTAG

Protein sequence

MEDSGCQWRTEMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAERFSADPIIRRVLYLWKKLDKN*
Homology
[Close]
BLAST of Cucsa.169980 vs. TrEMBL
Match: A0A0A0L3M4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439080 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MEDSGCQWRTEMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSL 60
          MEDSGCQWRTEMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSL
Sbjct: 1  MEDSGCQWRTEMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSL 60

Query: 61 LTAIGAYAERFSADPIIRRVLYLWKKLDKN 91
          LTAIGAYAERFSADPIIRRVLYLWKKLDKN
Sbjct: 61 LTAIGAYAERFSADPIIRRVLYLWKKLDKN 90

[Close]
BLAST of Cucsa.169980 vs. TrEMBL
Match: A0A067LF66_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10769 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 64/78 (82.05%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 11  EMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 70
           E L  NAEQA+LSK LA LRSDLP YMVPF+T DL F+KPEDNGEKFTSLLTAI AYAE 
Sbjct: 171 EALQANAEQALLSKKLALLRSDLPDYMVPFSTGDLAFRKPEDNGEKFTSLLTAISAYAEG 230

Query: 71  FSADPIIRRVLYLWKKLD 89
           FSADPIIRRVLYLWKKL+
Sbjct: 231 FSADPIIRRVLYLWKKLE 248

[Close]
BLAST of Cucsa.169980 vs. TrEMBL
Match: D7T2D6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00430 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 13  LVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAERFS 72
           L++ A+QA+LSK+LA LR DLPFYMVPFTT DL+F KPEDNGEKFTSLL AI AYAE FS
Sbjct: 364 LISGADQAVLSKNLALLRCDLPFYMVPFTTEDLIFTKPEDNGEKFTSLLNAISAYAEGFS 423

Query: 73  ADPIIRRVLYLWKKLDK 90
           ADPIIRR  YLWKKL+K
Sbjct: 424 ADPIIRRAFYLWKKLEK 440

[Close]
BLAST of Cucsa.169980 vs. TrEMBL
Match: A5BRP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010447 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 13  LVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAERFS 72
           L++ A+QA+LSK+LA LR DLPFYMVPFTT DL+F KPEDNGEKFTSLL AI AYAE FS
Sbjct: 657 LISGADQAVLSKNLALLRCDLPFYMVPFTTEDLIFTKPEDNGEKFTSLLNAISAYAEGFS 716

Query: 73  ADPIIRRVLYLWKKLDK 90
           ADPIIRR  YLWKKL+K
Sbjct: 717 ADPIIRRAFYLWKKLEK 733

[Close]
BLAST of Cucsa.169980 vs. TrEMBL
Match: A0A0D2RK02_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G123800 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-26
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 13  LVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAERFS 72
           L+ NA+QA+LSK+LA LR DLPFYMVPF+TRDL F KPEDNGEKFTSLL AI AYAE FS
Sbjct: 180 LIANADQAVLSKNLAMLRCDLPFYMVPFSTRDLTFNKPEDNGEKFTSLLNAISAYAEGFS 239

Query: 73  ADPIIRRVLYLWKKLD 89
           ADPIIRR  YLWKKL+
Sbjct: 240 ADPIIRRAFYLWKKLE 255

[Close]
BLAST of Cucsa.169980 vs. TAIR10
Match: AT3G52050.3 (AT3G52050.3 5'-3' exonuclease family protein)

HSP 1 Score: 110.2 bits (274), Expect = 7.0e-25
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 11  EMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 70
           E L+ +A+QAILSK LA LRSDLP Y+VPF T+DL FKKPEDNGEK +SLL AI  YAE 
Sbjct: 368 ESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNGEKLSSLLIAIADYAEG 427

Query: 71  FSADPIIRRVLYLWKKLD 89
           FSADP+IRR   LW+KL+
Sbjct: 428 FSADPVIRRAFRLWEKLE 445

[Close]
BLAST of Cucsa.169980 vs. NCBI nr
Match: gi|700199583|gb|KGN54741.1| (hypothetical protein Csa_4G439080 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 8.3e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MEDSGCQWRTEMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSL 60
          MEDSGCQWRTEMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSL
Sbjct: 1  MEDSGCQWRTEMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSL 60

Query: 61 LTAIGAYAERFSADPIIRRVLYLWKKLDKN 91
          LTAIGAYAERFSADPIIRRVLYLWKKLDKN
Sbjct: 61 LTAIGAYAERFSADPIIRRVLYLWKKLDKN 90

[Close]
BLAST of Cucsa.169980 vs. NCBI nr
Match: gi|449453197|ref|XP_004144345.1| (PREDICTED: uncharacterized protein LOC101222649 isoform X1 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 11  EMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 70
           +MLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER
Sbjct: 382 KMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 441

Query: 71  FSADPIIRRVLYLWKKLDKN 91
           FSADPIIRRVLYLWKKLDKN
Sbjct: 442 FSADPIIRRVLYLWKKLDKN 461

[Close]
BLAST of Cucsa.169980 vs. NCBI nr
Match: gi|778694790|ref|XP_011653865.1| (PREDICTED: uncharacterized protein LOC101222649 isoform X2 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 11  EMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 70
           +MLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER
Sbjct: 364 KMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 423

Query: 71  FSADPIIRRVLYLWKKLDKN 91
           FSADPIIRRVLYLWKKLDKN
Sbjct: 424 FSADPIIRRVLYLWKKLDKN 443

[Close]
BLAST of Cucsa.169980 vs. NCBI nr
Match: gi|659069411|ref|XP_008449676.1| (PREDICTED: uncharacterized protein LOC103491482 isoform X1 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 11  EMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 70
           +MLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER
Sbjct: 381 KMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 440

Query: 71  FSADPIIRRVLYLWKKLDKN 91
           FSADPIIRRVLYLWKKLDKN
Sbjct: 441 FSADPIIRRVLYLWKKLDKN 460

[Close]
BLAST of Cucsa.169980 vs. NCBI nr
Match: gi|659069413|ref|XP_008449686.1| (PREDICTED: uncharacterized protein LOC103491482 isoform X2 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 11  EMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 70
           +MLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER
Sbjct: 363 KMLVTNAEQAILSKDLATLRSDLPFYMVPFTTRDLLFKKPEDNGEKFTSLLTAIGAYAER 422

Query: 71  FSADPIIRRVLYLWKKLDKN 91
           FSADPIIRRVLYLWKKLDKN
Sbjct: 423 FSADPIIRRVLYLWKKLDKN 442

The following BLAST results are available for this feature:
BLAST of Cucsa.169980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3M4_CUCSA5.8e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G439080 PE=4 SV=1[more]
A0A067LF66_JATCU1.1e-2682.05Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10769 PE=4 SV=1[more]
D7T2D6_VITVI1.9e-2677.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00430 PE=4 SV=... [more]
A5BRP5_VITVI1.9e-2677.92Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010447 PE=4 SV=1[more]
A0A0D2RK02_GOSRA2.4e-2678.95Uncharacterized protein OS=Gossypium raimondii GN=B456_005G123800 PE=4 SV=1[more]
BLAST of Cucsa.169980 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52050.37.0e-2569.23 5'-3' exonuclease family protein[more]
BLAST of Cucsa.169980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199583|gb|KGN54741.1|8.3e-44100.00hypothetical protein Csa_4G439080 [Cucumis sativus][more]
gi|449453197|ref|XP_004144345.1|2.9e-3698.75PREDICTED: uncharacterized protein LOC101222649 isoform X1 [Cucumis sativus][more]
gi|778694790|ref|XP_011653865.1|2.9e-3698.75PREDICTED: uncharacterized protein LOC101222649 isoform X2 [Cucumis sativus][more]
gi|659069411|ref|XP_008449676.1|2.9e-3698.75PREDICTED: uncharacterized protein LOC103491482 isoform X1 [Cucumis melo][more]
gi|659069413|ref|XP_008449686.1|2.9e-3698.75PREDICTED: uncharacterized protein LOC103491482 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0006261 DNA-dependent DNA replication
cellular_component GO:0005575 cellular_component
cellular_component GO:0042575 DNA polymerase complex
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.169980.2Cucsa.169980.2mRNA
Cucsa.169980.1Cucsa.169980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10133DNA POLYMERASE Icoord: 11..90
score: 2.3
NoneNo IPR availablePANTHERPTHR10133:SF225'-3' EXONUCLEASE FAMILY PROTEINcoord: 11..90
score: 2.3