Cucsa.151990 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.151990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Pseudouridine synthase family protein
Location	scaffold01119 : 295101 .. 295487 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAAGCTTCATCTTCATGTTTTCGTTTCCCCGACCCTGTTTTCGTTTCCCGGACTCCTCCTCTTAGGCCTGCACTGCTCCACTTTTTCTCATCTTCTACTGCCTCCACTGATGCTTTTTCCACTCGGTGCGCTCCGGATCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAAAAGGTCGTTTTGCGAATCGGCTATGTCGGGACTGATTATCGAGGTCCTCATTTCACGTTACTCTCTGTTTCTCTTGACCATCCTCTTGTGAATCCTTCACCATTTCTCATTAACTCACTAGTTTTGACAATTCAGGACTACAAATGCAACGCAACCAACTGTCACATCCAA

mRNA sequence

ATGTCAGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAAGCTTCATCTTCATGTTTTCGTTTCCCCGACCCTGTTTTCGTTTCCCGGACTCCTCCTCTTAGGCCTGCACTGCTCCACTTTTTCTCATCTTCTACTGCCTCCACTGATGCTTTTTCCACTCGGTGCGCTCCGGATCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAAAAGGTCGTTTTGCGAATCGGCTATGTCGGGACTGATTATCGAGGTCCTCATTTCACTTTTGACAATTCAGGACTACAAATGCAACGCAACCAACTGTCACATCCAA

Coding sequence (CDS)

ATGTCAGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAAGCTTCATCTTCATGTTTTCGTTTCCCCGACCCTGTTTTCGTTTCCCGGACTCCTCCTCTTAGGCCTGCACTGCTCCACTTTTTCTCATCTTCTACTGCCTCCACTGATGCTTTTTCCACTCGGTGCGCTCCGGATCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAAAAGGTCGTTTTGCGAATCGGCTATGTCGGGACTGATTATCGAGGTCCTCATTTCACTTTTGACAATTCAGGACTACAAATGCAACGCAACCAACTGTCACATCCAA

Protein sequence

MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAPDQLRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLSHPX

Homology

[Close]

BLAST of Cucsa.151990 vs. Swiss-Prot
Match: PUSH_ARATH (Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VS LR+P+        S  F +P     +R   + PALL F  SS+A+    ST  +P
Sbjct: 1   MAVSFLRIPIP-------SRVFWYP-----TRLIRVTPALLRF--SSSAAFQPSSTSLSP 60

Query: 61  DQ-----LRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQL 105
                    KW+++RKKKVV+RIGYVGTDYRG     D+  ++    +L
Sbjct: 61  PSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGEL 95

[Close]

BLAST of Cucsa.151990 vs. TrEMBL
Match: A0A0A0LVB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533670 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 9.6e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
          MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP
Sbjct: 1  MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60

Query: 61 DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFT 92
          DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFT
Sbjct: 61 DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFT 91

[Close]

BLAST of Cucsa.151990 vs. TrEMBL
Match: M5WP30_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004352mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-12
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M++SSLRLP S W+ +     FRF  P+      PLR  L++  SS +++    ST    
Sbjct: 1   MAISSLRLPFSLWLPRLPIQSFRFSKPIL-----PLRLNLIYCSSSISSTAQQTSTH--- 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLS 106
             L KWQ+ RKKKVVLR+GYVG+DYR         GLQMQR++ S
Sbjct: 61  --LEKWQSVRKKKVVLRVGYVGSDYR---------GLQMQRDEHS 86

[Close]

BLAST of Cucsa.151990 vs. TrEMBL
Match: A0A068U688_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016610001 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.0e-12
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWIT-KASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAF----- 60
           M+V  LRLPLSPW+  +A+ +  +F +P       PL+P LL F +S+ AS  A      
Sbjct: 1   MAVIPLRLPLSPWLAARAAPTTLQFFNP-----NKPLKPFLLRFSTSAAASDAAAQDSVP 60

Query: 61  ---STRCAPDQLRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLSHP 108
              S+  +P    KW+ FRKKKVV+R+GYVG+DYR         GLQMQR++ + P
Sbjct: 61  LPPSSSPSPPPQNKWEPFRKKKVVMRVGYVGSDYR---------GLQMQRDEHALP 102

[Close]

BLAST of Cucsa.151990 vs. TrEMBL
Match: F6GUG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07710 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M VSSLR PL PWI    +S  RF +P  + +        LH  SSS+++     T   P
Sbjct: 1   MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWS------LHCSSSSSSTV----TESNP 60

Query: 61  DQ-LRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLS 106
           DQ ++KW++FRKKKVV+R+GYVGT+YR         GLQMQR++ S
Sbjct: 61  DQSVQKWESFRKKKVVMRVGYVGTNYR---------GLQMQRDESS 87

[Close]

BLAST of Cucsa.151990 vs. TrEMBL
Match: A5C2V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034891 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M VSSLR PL PWI    +S  RF +P  + +        LH  SSS+++     T   P
Sbjct: 1   MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWS------LHCSSSSSSTV----TESNP 60

Query: 61  DQ-LRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLS 106
           DQ ++KW++FRKKKVV+R+GYVGT+YR         GLQMQR++ S
Sbjct: 61  DQSVQKWESFRKKKVVMRVGYVGTNYR---------GLQMQRDESS 87

[Close]

BLAST of Cucsa.151990 vs. TAIR10
Match: AT2G30320.1 (AT2G30320.1 Pseudouridine synthase family protein)

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-10
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VS LR+P+        S  F +P     +R   + PALL F  SS+A+    ST  +P
Sbjct: 1   MAVSFLRIPIP-------SRVFWYP-----TRLIRVTPALLRF--SSSAAFQPSSTSLSP 60

Query: 61  DQ-----LRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQL 105
                    KW+++RKKKVV+RIGYVGTDYRG     D+  ++    +L
Sbjct: 61  PSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGEL 95

[Close]

BLAST of Cucsa.151990 vs. NCBI nr
Match: gi|449454977|ref|XP_004145230.1| (PREDICTED: putative tRNA pseudouridine synthase [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 5.6e-47
Identity = 98/107 (91.59%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP
Sbjct: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLSHP 108
           DQLRKWQAFRKKKVVLRIGYVGTDYR         GLQMQRNQLSHP
Sbjct: 61  DQLRKWQAFRKKKVVLRIGYVGTDYR---------GLQMQRNQLSHP 98

[Close]

BLAST of Cucsa.151990 vs. NCBI nr
Match: gi|700210764|gb|KGN65860.1| (hypothetical protein Csa_1G533670 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
          MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP
Sbjct: 1  MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60

Query: 61 DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFT 92
          DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFT
Sbjct: 61 DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFT 91

[Close]

BLAST of Cucsa.151990 vs. NCBI nr
Match: gi|659114949|ref|XP_008457308.1| (PREDICTED: putative tRNA pseudouridine synthase [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 88/107 (82.24%), Postives = 92/107 (85.98%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           MSVSSLRLPLSPWITK+SSSCFRFP PVFV RTP LRP LL+ FSS+ ASTDAFST+CAP
Sbjct: 1   MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAASTDAFSTQCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLSHP 108
           DQLRKWQAFRKKKVVLRIGYVGTDYR         GLQMQRNQLSHP
Sbjct: 61  DQLRKWQAFRKKKVVLRIGYVGTDYR---------GLQMQRNQLSHP 98

[Close]

BLAST of Cucsa.151990 vs. NCBI nr
Match: gi|595837032|ref|XP_007207376.1| (hypothetical protein PRUPE_ppa004352mg [Prunus persica])

HSP 1 Score: 78.2 bits (191), Expect = 9.9e-12
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M++SSLRLP S W+ +     FRF  P+      PLR  L++  SS +++    ST    
Sbjct: 1   MAISSLRLPFSLWLPRLPIQSFRFSKPIL-----PLRLNLIYCSSSISSTAQQTSTH--- 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLS 106
             L KWQ+ RKKKVVLR+GYVG+DYR         GLQMQR++ S
Sbjct: 61  --LEKWQSVRKKKVVLRVGYVGSDYR---------GLQMQRDEHS 86

[Close]

BLAST of Cucsa.151990 vs. NCBI nr
Match: gi|661892912|emb|CDP04070.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 1   MSVSSLRLPLSPWIT-KASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAF----- 60
           M+V  LRLPLSPW+  +A+ +  +F +P       PL+P LL F +S+ AS  A      
Sbjct: 1   MAVIPLRLPLSPWLAARAAPTTLQFFNP-----NKPLKPFLLRFSTSAAASDAAAQDSVP 60

Query: 61  ---STRCAPDQLRKWQAFRKKKVVLRIGYVGTDYRGPHFTFDNSGLQMQRNQLSHP 108
              S+  +P    KW+ FRKKKVV+R+GYVG+DYR         GLQMQR++ + P
Sbjct: 61  LPPSSSPSPPPQNKWEPFRKKKVVMRVGYVGSDYR---------GLQMQRDEHALP 102

The following BLAST results are available for this feature:

BLAST of Cucsa.151990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUSH_ARATH	1.3e-08	38.53	Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=3 S...	[more]

BLAST of Cucsa.151990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVB6_CUCSA	9.6e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533670 PE=4 SV=1	[more]
M5WP30_PRUPE	6.9e-12	44.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004352mg PE=4 SV=1	[more]
A0A068U688_COFCA	9.0e-12	42.24	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016610001 PE=4 SV=1	[more]
F6GUG3_VITVI	2.6e-11	45.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07710 PE=4 SV=...	[more]
A5C2V2_VITVI	2.6e-11	45.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034891 PE=4 SV=1	[more]

BLAST of Cucsa.151990 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30320.1	7.6e-10	38.53	Pseudouridine synthase family protein	[more]

BLAST of Cucsa.151990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454977\|ref\|XP_004145230.1\|	5.6e-47	91.59	PREDICTED: putative tRNA pseudouridine synthase [Cucumis sativus]	[more]
gi\|700210764\|gb\|KGN65860.1\|	1.4e-45	100.00	hypothetical protein Csa_1G533670 [Cucumis sativus]	[more]
gi\|659114949\|ref\|XP_008457308.1\|	1.7e-40	82.24	PREDICTED: putative tRNA pseudouridine synthase [Cucumis melo]	[more]
gi\|595837032\|ref\|XP_007207376.1\|	9.9e-12	44.76	hypothetical protein PRUPE_ppa004352mg [Prunus persica]	[more]
gi\|661892912\|emb\|CDP04070.1\|	1.3e-11	42.24	unnamed protein product [Coffea canephora]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.151990.1	Cucsa.151990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.151990	Cla008112	Watermelon (97103) v1	cgywmB270
Cucsa.151990	Csa1G533670	Cucumber (Chinese Long) v2	cgycuB219
Cucsa.151990	MELO3C020499	Melon (DHL92) v3.5.1	cgymeB255
Cucsa.151990	ClCG03G000200	Watermelon (Charleston Gray)	cgywcgB256
Cucsa.151990	CSPI01G24410	Wild cucumber (PI 183967)	cgycpiB224
Cucsa.151990	Lsi02G012250	Bottle gourd (USVL1VR-Ls)	cgylsiB244
Cucsa.151990	MELO3C020498.2	Melon (DHL92) v3.6.1	cgymedB253
Cucsa.151990	CsaV3_1G036700	Cucumber (Chinese Long) v3	cgycucB230
Cucsa.151990	Cla97C03G051010	Watermelon (97103) v2	cgywmbB257
Cucsa.151990	Bhi08G000362	Wax gourd	cgywgoB296

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.151990	Cucurbita pepo (Zucchini)	cgycpeB0405
Cucsa.151990	Silver-seed gourd	carcgyB0601
Cucsa.151990	Silver-seed gourd	carcgyB0602
Cucsa.151990	Cucurbita maxima (Rimu)	cgycmaB0418
Cucsa.151990	Cucurbita maxima (Rimu)	cgycmaB0421
Cucsa.151990	Cucurbita moschata (Rifu)	cgycmoB0417
Cucsa.151990	Cucurbita moschata (Rifu)	cgycmoB0418
Cucsa.151990	Cucurbita moschata (Rifu)	cgycmoB0421