Cucsa.149710 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.149710
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrotransposon protein
Locationscaffold01110 : 574013 .. 575031 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTTTATTTATACTTCATTATACGACCTATATATTTCATTCCTATAGTTTTCCAATATTTAGTTCAATTATGCAAACGTTAAATTTACAATAAAATACCTATTCGCTAGCTTTTAACTATAAGGGCGACTTCGTATTTCATTTTGCAACTCACACTATTTTTGTATGGATTTGAAACACAGTTGACCATTACTTTTTACTAGAATACGGGTTTAGAGTTTTAAGGAACATGATGAATAATTTTTAAGCACATAGTTATGCATTAAAAAAAAAAGAAATTTTGCCTATCTCAATATGAACTATTCTTAGCGACCATTTTAAAACATAACACTATGACTTTGAAGAACCCTTCGTAGTCACGCATAGTGGCTAGTGGATACACTTTTTAAATAGTTATATCCTAAGAACAAAAAAATGTTATTCAGTTTTCCTAACGCATTAAAAAATATTTTCAAGAAACTAAAAAGTCCTTCATTGTCTTTTTTTGAATAATGGATTTAGAATTTCTGATTTTAGTTACAAAAAAAAAATGGGCAGCGTGCTTGAATAAGTTCGTTTTACTTCACTATAATGTATATGTTGAAAAAGGTATTATGTTCTAATGCATGCACTGTATGTGTGATAGCATTGTAGTCATAACAGTAGATTGTCAGTTTCGTTGTCGCTACCATCAAATAGACCCAAAAAACATATGCATAATATTAACCGTGTTCATAGTCACCGAATGTCAGTTATTCCTGATTTTGGAGGCATTGAAGAACGACAATAAGCGCGTGACACATATACCGTATGAGACTAGACATCAAATTAGACAACTTGCCTACTTTTGTATGATACACGCCTCTGACCTCACTTGTCGCCAAAGTACTAGAATGGATAGAAGAACTTTTGCCATTCTATGTCACTTACTAAGGACAAGTGTTGGTCTGACGTCTACAGAATGCATCGATGTGGAGGAGATAGCCGCGATGTTTCTACATATACTGGCACATATAGGGTATTTGTGGTTTCTTGAATAA

mRNA sequence

TACTTTATTTATACTTCATTATACGACCTATATATTTCATTCCTATAGTTTTCCAATATTTAGTTCAATTATGCAAACtttcgttgtcgctaccatcaaatagacccaaaaaacatatgcataatattaaccgtgttcatagtcaccgaatacaacttgcctacttttgtatgatacacgcctctgacctcacttgtcgccaaagtactagaatggatagaagaacttttgccattctatgtcacttactaaggacaagtgttggtctgacgtctacagaatgcatcgatgtggaggagatagccgcgatgtttctacatatactggcacaTATAGGGTATTTGTGGTTTCTTGAATAA

Coding sequence (CDS)

TACTTTATTTATACTTCATTATACGACCTATATATTTCATTCCTATAGTTTTCCAATATTTAGTTCAATTATGCAAACTTTCGTTGTCGCTACCATCAAATAGACCCAAAAAACATATGCATAATATTAACCGTGTTCATAGTCACCGAATACAACTTGCCTACTTTTGTATGATACACGCCTCTGACCTCACTTGTCGCCAAAGTACTAGAATGGATAGAAGAACTTTTGCCATTCTATGTCACTTACTAAGGACAAGTGTTGGTCTGACGTCTACAGAATGCATCGATGTGGAGGAGATAGCCGCGATGTTTCTACATATACTGGCACATATAGGGTATTTGTGGTTTCTTGAATAA

Protein sequence

LYLYFIIRPIYFIPIVFQYLVQLCKLSLSLPSNRPKKHMHNINRVHSHRIQLAYFCMIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAHIGYLWFLE*
Homology
[Close]
BLAST of Cucsa.149710 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 57  MIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 111
           MIH SDL CRQSTRMDRRTFAILCHLLR   GL+STE +DVEE+ AMFLH+LAH
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAH 54

[Close]
BLAST of Cucsa.149710 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 1 

Query: 6   IIRPIYFIPIVFQYLVQLCKLS---------LSLPSNRPKKHMHNINRVHSHRIQLAYFC 65
           +I  +Y I  +   L  LC  +         +  P+NR    + N+NR            
Sbjct: 12  LILILYIIVNILNMLTALCTTTRKHYQRRTLMERPANREFLRVENLNR------------ 71

Query: 66  MIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 111
           +I+ SD+ C +  RMDR TF  LC +LRT   L  ++ IDVEE+ A+FLHILAH
Sbjct: 72  LIYGSDVACMEQLRMDRHTFTTLCSMLRTIGKLKDSKYIDVEEMVALFLHILAH 113

[Close]
BLAST of Cucsa.149710 vs. TrEMBL
Match: A0A072V2B5_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g117940 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1 

Query: 21  VQLCKLSLSLPSNRPKKHMHNINRVHSHRIQLAYFC-MIHASDLTCRQSTRMDRRTFAIL 80
           + LC  +LS   NR KK     +      ++  +F  +I+ SD+ C ++TRMDR  F  L
Sbjct: 33  MMLCYFALS---NRLKKRKRKWDCYERSLVREVHFQRIIYTSDVACIENTRMDRPAFHKL 92

Query: 81  CHLLRTSVGLTSTECIDVEEIAAMFLHILAH 111
           C +L+   GL  T  + VEE+ AMFLHILAH
Sbjct: 93  CEMLKGIGGLVPTRHMCVEELVAMFLHILAH 120

[Close]
BLAST of Cucsa.149710 vs. NCBI nr
Match: gi|659131061|ref|XP_008465488.1| (PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-19
Identity = 58/86 (67.44%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 26  LSLSLPSNRPKKHMHNINRVHSHRI-QLAYFCMIHASDLTCRQSTRMDRRTFAILCHLLR 85
           L L L  N  K+  H I     HRI QLAYF MIH S+L CR+STRMDRR F ILCHLLR
Sbjct: 22  LMLELLKNDTKRITH-IPYETRHRIRQLAYFRMIHGSNLVCRRSTRMDRRCFVILCHLLR 81

Query: 86  TSVGLTSTECIDVEEIAAMFLHILAH 111
           T  GLTSTE IDVEE+ AMFLHILAH
Sbjct: 82  TIAGLTSTEVIDVEEMVAMFLHILAH 106

[Close]
BLAST of Cucsa.149710 vs. NCBI nr
Match: gi|659113203|ref|XP_008456452.1| (PREDICTED: uncharacterized protein LOC103496395 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-19
Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 28  LSLPSNRPKKHMHNINRVHSHRI-QLAYFCMIHASDLTCRQSTRMDRRTFAILCHLLRTS 87
           L L  N  K+  H I     HRI QLAYF MIH SDL CRQSTRM+RR FAILCHLLRT 
Sbjct: 2   LELLKNDTKRVTH-IPYETRHRIRQLAYFRMIHGSDLVCRQSTRMNRRCFAILCHLLRTI 61

Query: 88  VGLTSTECIDVEEIAAMFLHILAH 111
            GLTST+ +DVEE+ AMFLHILAH
Sbjct: 62  AGLTSTKVVDVEEMVAMFLHILAH 84

[Close]
BLAST of Cucsa.149710 vs. NCBI nr
Match: gi|659109391|ref|XP_008454692.1| (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-19
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 26  LSLSLPSNRPKKHMHNINRVHSHRIQLAYFCMIHASDLTCRQSTRMDRRTFAILCHLLRT 85
           L+L L  N  K+  H    +     QLAYF MIH SDL CRQSTRMD+R FAILCHLLRT
Sbjct: 22  LTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLVCRQSTRMDQRCFAILCHLLRT 81

Query: 86  SVGLTSTECIDVEEIAAMFLHILAH 111
              LTSTE +DVEE+ AM+LHILAH
Sbjct: 82  IAELTSTEVVDVEEMVAMYLHILAH 106

[Close]
BLAST of Cucsa.149710 vs. NCBI nr
Match: gi|659128055|ref|XP_008464023.1| (PREDICTED: uncharacterized protein LOC103502006 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 48  HRI-QLAYFCMIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLH 107
           HRI +LAYF MIH SDL C+QS RMDRRTFAILCHLLR   GL+ST  +DVEEI AMFLH
Sbjct: 16  HRIRELAYFHMIHESDLVCQQSMRMDRRTFAILCHLLRNVDGLSSTRIVDVEEIVAMFLH 75

Query: 108 ILAH 111
           +LAH
Sbjct: 76  VLAH 79

[Close]
BLAST of Cucsa.149710 vs. NCBI nr
Match: gi|659077815|ref|XP_008439401.1| (PREDICTED: uncharacterized protein LOC103484217 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 8.6e-17
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1 

Query: 48  HRI-QLAYFCMIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLH 107
           HRI QLAYF MIH SDL CRQST MDRRTFAILCH+ RT  GL STE +DVEE+ +MFLH
Sbjct: 16  HRIRQLAYFQMIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLH 75

Query: 108 ILAH 111
           IL H
Sbjct: 76  ILVH 79

The following BLAST results are available for this feature:
BLAST of Cucsa.149710 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME3.0e-1679.63Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5BND9_VITVI3.5e-0935.96Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
A0A072V2B5_MEDTR1.3e-0640.66Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g117940 PE=4 SV=1[more]
BLAST of Cucsa.149710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131061|ref|XP_008465488.1|4.1e-1967.44PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo][more]
gi|659113203|ref|XP_008456452.1|4.1e-1967.86PREDICTED: uncharacterized protein LOC103496395 [Cucumis melo][more]
gi|659109391|ref|XP_008454692.1|5.4e-1962.35PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo][more]
gi|659128055|ref|XP_008464023.1|3.0e-1775.00PREDICTED: uncharacterized protein LOC103502006 [Cucumis melo][more]
gi|659077815|ref|XP_008439401.1|8.6e-1775.00PREDICTED: uncharacterized protein LOC103484217 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.149710.1Cucsa.149710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.149710CsaV3_3G030500Cucumber (Chinese Long) v3cgycucB227
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.149710Cucurbita pepo (Zucchini)cgycpeB0402
Cucsa.149710Bottle gourd (USVL1VR-Ls)cgylsiB242
Cucsa.149710Melon (DHL92) v3.6.1cgymedB249
Cucsa.149710Watermelon (97103) v2cgywmbB253
Cucsa.149710Wax gourdcgywgoB293
Cucsa.149710Cucurbita maxima (Rimu)cgycmaB0410
Cucsa.149710Cucurbita moschata (Rifu)cgycmoB0410
Cucsa.149710Wild cucumber (PI 183967)cgycpiB221
Cucsa.149710Cucumber (Chinese Long) v2cgycuB216
Cucsa.149710Melon (DHL92) v3.5.1cgymeB251
Cucsa.149710Watermelon (Charleston Gray)cgywcgB253