CsaV3_3G030500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G030500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrotransposon protein
Location	chr3 : 26302364 .. 26302848 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATGGGCAGCGTGCTTGAATAAGTTCGTTTTACTTCACTATAATGTATATGTTGAAAAAGGTATTATGTTCTAATGCATGCACTGTATGTGTGATAGCATTGTAGTCATAACAGTAGATTGTCAGTTTCGTTGTCGCTACCATCAAATAGACCCAAAAAACATATGCATAATATTAACCGTGTTCATAGTCACCGAATGTCAGTTATTCCTGATTTTGGAGGCATTGAAGAACGACAATAAGCGCGTGACACATATACCGTATGAGACTAGACATCAAATTAGACAACTTGCCTACTTTTGTATGATACACGCCTCTGACCTCACTTGTCGCCAAAGTACTAGAATGGATAGAAGAACTTTTGCCATTCTATGTCACTTACTAAGGACAAGTGTTGGTCTGACGTCTACAGAATGCATCGATGTGGAGGAGATAGCCGCGATGTTTCTACATATACTGGCACATATAGGGTATTTGTGGTT

mRNA sequence

ATGCACTGTATGTGTGATAGCATTGTAGTCATAACAGTAGATTGTCAGTTTCGTTGTCGCTACCATCAAATAGACCCAAAAAACATATGCATAATATTAACCGTGTTCATAGTCACCGAATGTCAGTTATTCCTGATTTTGGAGGCATTGAAGAACGACAATAAGCGCGTGACACATATACCGTATGAGACTAGACATCAAATTAGACAACTTGCCTACTTTTGTATGATACACGCCTCTGACCTCACTTGTCGCCAAAGTACTAGAATGGATAGAAGAACTTTTGCCATTCTATGTCACTTACTAAGGACAAGTGTTGGTCTGACGTCTACAGAATGCATCGATGTGGAGGAGATAGCCGCGATGTTTCTACATATACTGGCACATATAGGGTATTTGTGGTT

Coding sequence (CDS)

ATGCACTGTATGTGTGATAGCATTGTAGTCATAACAGTAGATTGTCAGTTTCGTTGTCGCTACCATCAAATAGACCCAAAAAACATATGCATAATATTAACCGTGTTCATAGTCACCGAATGTCAGTTATTCCTGATTTTGGAGGCATTGAAGAACGACAATAAGCGCGTGACACATATACCGTATGAGACTAGACATCAAATTAGACAACTTGCCTACTTTTGTATGATACACGCCTCTGACCTCACTTGTCGCCAAAGTACTAGAATGGATAGAAGAACTTTTGCCATTCTATGTCACTTACTAAGGACAAGTGTTGGTCTGACGTCTACAGAATGCATCGATGTGGAGGAGATAGCCGCGATGTTTCTACATATACTGGCACATATAGGGTATTTGTGGTT

Protein sequence

MHCMCDSIVVITVDCQFRCRYHQIDPKNICIILTVFIVTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAHIGYLWX

Homology

[Close]

BLAST of CsaV3_3G030500 vs. NCBI nr
Match: XP_008454692.1 (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 7.2e-32
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 29  ICIILTVFIVTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLTCRQST 88
           +  I+ VFI ++ QL L LE LKND KR+THIPYE RH+IRQLAYF MIH SDL CRQST
Sbjct: 6   LAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLVCRQST 65

Query: 89  RMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           RMD+R FAILCHLLRT   LTSTE +DVEE+ AM+LHILAH
Sbjct: 66  RMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAH 106

[Close]

BLAST of CsaV3_3G030500 vs. NCBI nr
Match: XP_016899496.1 (PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 2.2e-28
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 24  IDPKNICIILTVFIVTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLT 83
           +D + +  +LT F + + Q+ L LE L NDN+R+T+ P++T ++IRQLAYF MIH SDL 
Sbjct: 1   MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 84  CRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           CRQSTRMDRRTFAILCHLLRT   L+S E IDVEE+ AMFLH+LAH
Sbjct: 61  CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAH 106

[Close]

BLAST of CsaV3_3G030500 vs. NCBI nr
Match: XP_008463581.1 (PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-24
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 38  VTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLTCRQSTRMDRRTFAI 97
           +T+CQ+ L+LEAL NDNKR+   PY TRH+IRQLAYF MIH S L CR+ TR+DRRT  I
Sbjct: 1   MTQCQMLLMLEALMNDNKRLPQTPYNTRHRIRQLAYFQMIHKSHLVCREITRIDRRTLII 60

Query: 98  LCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           LC+LL+   GL+  E +DVEE+ AMFL++L H
Sbjct: 61  LCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVH 92

[Close]

BLAST of CsaV3_3G030500 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 24  IDPKNICIILTVFIVTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLT 83
           +D   +  I+  FI ++ QL L+LE LKND KR+THIPYETRH+IRQLAYF MIH     
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHG---- 60

Query: 84  CRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
                               T  GLTSTE +DVEE+ AMFLHILAH
Sbjct: 61  --------------------TIAGLTSTEVVDVEEMVAMFLHILAH 82

[Close]

BLAST of CsaV3_3G030500 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 76  MIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           MIH SDL CRQSTRMDRRTFAILCHLLR   GL+STE +DVEE+ AMFLH+LAH
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAH 54

[Close]

BLAST of CsaV3_3G030500 vs. TrEMBL
Match: tr|A0A1S3BYR8|A0A1S3BYR8_CUCME (uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.8e-32
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 29  ICIILTVFIVTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLTCRQST 88
           +  I+ VFI ++ QL L LE LKND KR+THIPYE RH+IRQLAYF MIH SDL CRQST
Sbjct: 6   LAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLVCRQST 65

Query: 89  RMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           RMD+R FAILCHLLRT   LTSTE +DVEE+ AM+LHILAH
Sbjct: 66  RMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAH 106

[Close]

BLAST of CsaV3_3G030500 vs. TrEMBL
Match: tr|A0A1S4DU32|A0A1S4DU32_CUCME (uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 24  IDPKNICIILTVFIVTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLT 83
           +D + +  +LT F + + Q+ L LE L NDN+R+T+ P++T ++IRQLAYF MIH SDL 
Sbjct: 1   MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 84  CRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           CRQSTRMDRRTFAILCHLLRT   L+S E IDVEE+ AMFLH+LAH
Sbjct: 61  CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAH 106

[Close]

BLAST of CsaV3_3G030500 vs. TrEMBL
Match: tr|A0A1S3CL59|A0A1S3CL59_CUCME (uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-24
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 38  VTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLTCRQSTRMDRRTFAI 97
           +T+CQ+ L+LEAL NDNKR+   PY TRH+IRQLAYF MIH S L CR+ TR+DRRT  I
Sbjct: 1   MTQCQMLLMLEALMNDNKRLPQTPYNTRHRIRQLAYFQMIHKSHLVCREITRIDRRTLII 60

Query: 98  LCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           LC+LL+   GL+  E +DVEE+ AMFL++L H
Sbjct: 61  LCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVH 92

[Close]

BLAST of CsaV3_3G030500 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 24  IDPKNICIILTVFIVTECQLFLILEALKNDNKRVTHIPYETRHQIRQLAYFCMIHASDLT 83
           +D   +  I+  FI ++ QL L+LE LKND KR+THIPYETRH+IRQLAYF MIH     
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHG---- 60

Query: 84  CRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
                               T  GLTSTE +DVEE+ AMFLHILAH
Sbjct: 61  --------------------TIAGLTSTEVVDVEEMVAMFLHILAH 82

[Close]

BLAST of CsaV3_3G030500 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.2e-16
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 76  MIHASDLTCRQSTRMDRRTFAILCHLLRTSVGLTSTECIDVEEIAAMFLHILAH 130
           MIH SDL CRQSTRMDRRTFAILCHLLR   GL+STE +DVEE+ AMFLH+LAH
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAH 54

The following BLAST results are available for this feature:

BLAST of CsaV3_3G030500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454692.1	7.2e-32	71.29	PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo]	[more]
XP_016899496.1	2.2e-28	62.26	PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo]	[more]
XP_008463581.1	5.5e-24	60.87	PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo]	[more]
ADN34114.1	1.7e-17	50.94	retrotransposon protein [Cucumis melo subsp. melo]	[more]
ADN33754.1	1.2e-15	79.63	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of CsaV3_3G030500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G030500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G030500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BYR8\|A0A1S3BYR8_CUCME	4.8e-32	71.29	uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=...	[more]
tr\|A0A1S4DU32\|A0A1S4DU32_CUCME	1.4e-28	62.26	uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=...	[more]
tr\|A0A1S3CL59\|A0A1S3CL59_CUCME	3.7e-24	60.87	uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=...	[more]
tr\|E5GCB5\|E5GCB5_CUCME	1.1e-17	50.94	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|E5GBB2\|E5GBB2_CUCME	8.2e-16	79.63	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G030500.1	CsaV3_3G030500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF112	SUBFAMILY NOT NAMED	coord: 32..129
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 32..129

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G030500	Cucsa.149710	Cucumber (Gy14) v1	cgycucB227
CsaV3_3G030500	MELO3C030847.2	Melon (DHL92) v3.6.1	cucmedB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G030500	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G030500	Cucurbita maxima (Rimu)	cmacucB0282
CsaV3_3G030500	Cucurbita moschata (Rifu)	cmocucB0273
CsaV3_3G030500	Cucurbita pepo (Zucchini)	cpecucB0750
CsaV3_3G030500	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G030500	Bottle gourd (USVL1VR-Ls)	cuclsiB253
CsaV3_3G030500	Melon (DHL92) v3.5.1	cucmeB206
CsaV3_3G030500	Melon (DHL92) v3.6.1	cucmedB199
CsaV3_3G030500	Watermelon (Charleston Gray)	cucwcgB261
CsaV3_3G030500	Watermelon (97103) v2	cucwmbB241
CsaV3_3G030500	Wax gourd	cucwgoB280