Cucsa.142700 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.142700
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L30
Location	scaffold01079 : 916568 .. 918759 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTAGTTATTTCAAAAATTGACTTCTTTGAAAGGTATTATTAAGTACAACTTGAGGGAGAGTTGAACCCGTAACATCTATCCTCGGGAGCATACAAATATTAGTCGATATCAACGGTTGGAAAAaAAAAAaGaTTTTTGAACCTAAAAGACCAACTTTAAAAATTGGGCCTAACGGATCAGCATGAGGCCCAAGTTTTAGGCTAACCCTTTCGGTGCTCTATATATATTTTtCTGAATTAGGGTTTTTGGCCGTTCAGTTGGCGAGTACAGCTTCGAATCTTCAATCATGGTGGCCGCAAAGAAGACGGTATGTTTCTTCTTCCCCcTCTGGCCAACCTCCGTTCTTAGTTCTTCCATTTtCAATTTGATCTTTGCTAGCTTTGAAGTGCTCTGACATTTTTCTTTcTTGTTGCGATGCCTTGAACAGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAGCTCTAAAGGTAATCTATTGATTAAGCTTTCTTCTTTTTGTTACTGATCTGATCTCTAGATTTTGCATCGATGGATGTTCTGGTATCTTTTTTTTTtAGTTTAGTTGTATTTTATTTAGGGTTTTAGCTGTAATCACTGAAAGTTTCGAGTCACAATCTTTCTGAGGATGAAAACGTCGTAAGCTGTCGATCTGAGATTTTATTTCTTACGGCATTTGATTATTCTTTTtATTCTGGTCTTCATCCATCAATCAAATAGTCGACTTAGGTATCCAATTTATGTTGTTGTACCAATTGAAATTACACTGTGCGTGGGGATCTATAGTTTCTGATTTGTTGTTCATGATTTTGTATGCCCTTAGTTTCTGCTTTTGTGGGTATATCTGATTTTTTGTTTGTTTTGCAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAGTACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGAAGTACGTTTCTAACCCTTTTATCAAAGCATTATCCTTTTTTTTtCTTTGGCACAACATTGTCATTTAATTGCCCTTTAGAATTAGAACATGTATTTATCTACCGTCATTTTTCAACTGAGAAAATTTCTCAAAGCCTCATTAGTTACTGGACTTGTTGGATAGCTTAATGGTTTTTCCCATGTAGCTAAAGCATTTGCTTCATGTCATGGTTATGTTCATACCTTGACTCTTTGCCCCTTTTTTAAACAATAAATAGCGAGTAGAACTCTATGGAACAAGAGCATATTAATTGTCTTGGATTAGGAGAAGGCTGTAACAAAAGAATCTAGGGTAATGCCTCATGTAGATCTGGATTAGAAGTTGATTACGGTGGAATAGTTTTACTTAAATTTTACTCATTGTGAACACATATCTCTTTTTtATATGTGCTCAGGCAATGTTGACCTTGGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTACATTTCTTGATTAATTCCATCTTCTACTTTTGAATTACAGCCTGAACACAATGTTCTAATTATGGTTTTCTAATGTTTTTCAGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAGGTTGCAACTTCTTTTTAAGATCATAGAATTTTGTTTCAGAGTTTCTTCTTGGTTTTGGGTTGAACGTAGTGATGTGTTTTTGCTTGTGAGGCATGATATTATTGAACAAATGGTTTCATTATAAACCCTTTTTTATGTTCAAGATCATCTTATTCCAGAAAACTTCCGTATCGTTATCTTGGTGCCCATTTAACAGTACAACCATGTTGCCTCCTCATATTTTTTGTTCTATTGTTATAATATTAGTGTCAATTTGACATGTTCTTATGTTGGGGCAAATTAATAAATTTTGAAGAGTGTTTCATGTGATCCTATGACTAATCCAAGGTTAGATTGAAAATGAGAATGTTAAATCTTCTCATAGATCAAATGTTGTGAGCCATGTCACGGGAGTGCTAAGATAGATTCGATGGGCTTGATAGTGACACCTATCTTTGCTCATTTCGTGTTAGTGCCTTTTTTTTtAATTTAAGAAACTCATAGTTACTTGAACTTTTTGAAATGGATAATAAATTATTGAATGTGCCA

mRNA sequence

ATGTCATTAGTTATTTCAAAAATTGACttctttgaaagGGTTTTTGGCCGTTCAGTTGGCGAGTACAGCTTCGAATCTTCAATCATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAGTACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTTGACCTTGGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAGGTTGCAACTTCTTTTTAAGATCATAGAATTTTGTTTCAGAGTTTCTTCTTGGTTTTGGGTTGAACGTAGTGATGTGTTTTTGCTTGTGAGGCATGATATTATTGAACAAATGGTTTCATTATAAACCCTTTTTTATGTTCAAGATCATCTTATTCCAGAAAACTTCCGTATCGTTATCTTGGTGCCCATTTAACAGTACAACCATGTTGCCTCCTCATATTTTTTGTTCTATTGTTATAATATTAGTGTCAATTTGACATGTTCTTATGTTGGGGCAAATTAATAAATTTTGAAGAGTGTTTCATGTGATCCTATGACTAATCCAAGGTTAGATTGAAAATGAGAATGTTAAATCTTCTCATAGATCAAATGTTGTGAGCCATGTCACGGGAGTGCTAAGATAGATTCGATGGGCTTGATAGTGACACCTATCTTTGCTCATTTCGTGTTAGTGCCTTTTTTTTTAATTTAAGAAACTCATAGTTACTTGAACTTTTTGAAATGGATAATAAATTATTGAATGTGCCA

Coding sequence (CDS)

ATGTCATTAGTTATTTCAAAAATTGACTTCTTTGAAAGGGTTTTTGGCCGTTCAGTTGGCGAGTACAGCTTCGAATCTTCAATCATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAGTACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTTGACCTTGGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAG

Protein sequence

MSLVISKIDFFERVFGRSVGEYSFESSIMVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES*

Homology

[Close]

BLAST of Cucsa.142700 vs. Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.5e-56
Identity = 104/109 (95.41%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPGDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLP 109

[Close]

BLAST of Cucsa.142700 vs. Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.2e-53
Identity = 100/109 (91.74%), Postives = 108/109 (99.08%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LRS+KGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIP 109

[Close]

BLAST of Cucsa.142700 vs. Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.1e-50
Identity = 94/109 (86.24%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]

BLAST of Cucsa.142700 vs. Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-49
Identity = 92/109 (84.40%), Postives = 103/109 (94.50%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109

[Close]

BLAST of Cucsa.142700 vs. Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-48
Identity = 91/109 (83.49%), Postives = 104/109 (95.41%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109

[Close]

BLAST of Cucsa.142700 vs. TrEMBL
Match: A0A0A0LXA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600980 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.6e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 140
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of Cucsa.142700 vs. TrEMBL
Match: K4DAK6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.6e-55
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of Cucsa.142700 vs. TrEMBL
Match: A0A059D9M8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03786 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKL+IIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of Cucsa.142700 vs. TrEMBL
Match: A0A0V0GYL7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-54
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIP 109

[Close]

BLAST of Cucsa.142700 vs. TrEMBL
Match: A0A0L9VLX3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g194800 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-54
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIK+MP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTMP 109

[Close]

BLAST of Cucsa.142700 vs. TAIR10
Match: AT1G36240.1 (AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 199.1 bits (505), Expect = 1.8e-51
Identity = 94/109 (86.24%), Postives = 106/109 (97.25%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]

BLAST of Cucsa.142700 vs. TAIR10
Match: AT1G77940.1 (AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-50
Identity = 92/109 (84.40%), Postives = 103/109 (94.50%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109

[Close]

BLAST of Cucsa.142700 vs. TAIR10
Match: AT3G18740.1 (AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-50
Identity = 91/109 (83.49%), Postives = 104/109 (95.41%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109

[Close]

BLAST of Cucsa.142700 vs. NCBI nr
Match: gi|778663457|ref|XP_011660089.1| (PREDICTED: 60S ribosomal protein L30 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 140
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of Cucsa.142700 vs. NCBI nr
Match: gi|659100413|ref|XP_008451087.1| (PREDICTED: 60S ribosomal protein L30 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 5.0e-56
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 140
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES 111

[Close]

BLAST of Cucsa.142700 vs. NCBI nr
Match: gi|460411609|ref|XP_004251199.1| (PREDICTED: 60S ribosomal protein L30 [Solanum lycopersicum])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of Cucsa.142700 vs. NCBI nr
Match: gi|702279726|ref|XP_010045139.1| (PREDICTED: 60S ribosomal protein L30 [Eucalyptus grandis])

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKL+IIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 138
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of Cucsa.142700 vs. NCBI nr
Match: gi|697155155|ref|XP_009631814.1| (PREDICTED: 60S ribosomal protein L30-like [Nicotiana tomentosiformis])

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-54
Identity = 106/110 (96.36%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 29  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 88
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 89  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPE 139
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIIDPGDSDIIKSMP+
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKSMPD 110

The following BLAST results are available for this feature:

BLAST of Cucsa.142700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL30_LUPLU	6.5e-56	95.41	60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1	[more]
RL30_EUPES	5.2e-53	91.74	60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1	[more]
RL301_ARATH	3.1e-50	86.24	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1	[more]
RL302_ARATH	2.0e-49	84.40	60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1	[more]
RL303_ARATH	1.0e-48	83.49	60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1	[more]

BLAST of Cucsa.142700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXA9_CUCSA	1.6e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600980 PE=3 SV=1	[more]
K4DAK6_SOLLC	8.6e-55	98.17	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A059D9M8_EUCGR	1.1e-54	97.25	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03786 PE=3 SV=1	[more]
A0A0V0GYL7_SOLCH	2.5e-54	97.25	Putative ovule protein OS=Solanum chacoense PE=3 SV=1	[more]
A0A0L9VLX3_PHAAN	2.5e-54	97.25	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g194800 PE=3 SV=1	[more]

BLAST of Cucsa.142700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36240.1	1.8e-51	86.24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G77940.1	1.1e-50	84.40	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	5.7e-50	83.49	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of Cucsa.142700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663457\|ref\|XP_011660089.1\|	2.2e-56	100.00	PREDICTED: 60S ribosomal protein L30 [Cucumis sativus]	[more]
gi\|659100413\|ref\|XP_008451087.1\|	5.0e-56	99.10	PREDICTED: 60S ribosomal protein L30 [Cucumis melo]	[more]
gi\|460411609\|ref\|XP_004251199.1\|	1.2e-54	98.17	PREDICTED: 60S ribosomal protein L30 [Solanum lycopersicum]	[more]
gi\|702279726\|ref\|XP_010045139.1\|	1.6e-54	97.25	PREDICTED: 60S ribosomal protein L30 [Eucalyptus grandis]	[more]
gi\|697155155\|ref\|XP_009631814.1\|	2.1e-54	96.36	PREDICTED: 60S ribosomal protein L30-like [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000231	Ribosomal_L30e
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR022991	Ribosomal_L30e_CS
IPR000231	Ribosomal_L30e
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR022991	Ribosomal_L30e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.142700.1	Cucsa.142700.1	mRNA
Cucsa.142700.2	Cucsa.142700.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000231	Ribosomal protein L30e	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 30..104 score: 3.2
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 41..107 score: 1.3
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00709	RIBOSOMAL_L30E_1	coord: 52..76 scor
None	No IPR available	PANTHER	PTHR11449:SF2	SUBFAMILY NOT NAMED	coord: 30..104 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.142700	Cla011073	Watermelon (97103) v1	cgywmB251
Cucsa.142700	Csa1G600980	Cucumber (Chinese Long) v2	cgycuB205
Cucsa.142700	MELO3C015628	Melon (DHL92) v3.5.1	cgymeB238
Cucsa.142700	ClCG03G014160	Watermelon (Charleston Gray)	cgywcgB242
Cucsa.142700	CSPI01G29660	Wild cucumber (PI 183967)	cgycpiB208
Cucsa.142700	CmaCh10G009780	Cucurbita maxima (Rimu)	cgycmaB0395
Cucsa.142700	CmaCh11G008110	Cucurbita maxima (Rimu)	cgycmaB0396
Cucsa.142700	CmoCh11G008140	Cucurbita moschata (Rifu)	cgycmoB0396
Cucsa.142700	CmoCh10G010310	Cucurbita moschata (Rifu)	cgycmoB0395
Cucsa.142700	Lsi06G004380	Bottle gourd (USVL1VR-Ls)	cgylsiB230
Cucsa.142700	Cp4.1LG18g01180	Cucurbita pepo (Zucchini)	cgycpeB0382
Cucsa.142700	Cp4.1LG04g11690	Cucurbita pepo (Zucchini)	cgycpeB0385
Cucsa.142700	MELO3C015628.2	Melon (DHL92) v3.6.1	cgymedB235
Cucsa.142700	CsaV3_1G042100	Cucumber (Chinese Long) v3	cgycucB213
Cucsa.142700	Cla97C03G064340	Watermelon (97103) v2	cgywmbB241
Cucsa.142700	Bhi02G001405	Wax gourd	cgywgoB280
Cucsa.142700	Carg18011	Silver-seed gourd	carcgyB0212
Cucsa.142700	Carg16981	Silver-seed gourd	carcgyB0539

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.142700	Wax gourd	cgywgoB282