Cucsa.137500 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.137500
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ras-related protein Rab-5C
Location	scaffold01053 : 258890 .. 262750 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCCATCTTCTCTTTCTGTCTTTATGCAGCTTGTCCTGCTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGATCCAACGTCTAAGGTTAGGGCATGCTACAGTCTGTAAATTCTTGAAATAAATATGCGCTTGATACAAAAAAATTTACATTTTTCTCATTGTATTCCCAGAATAACTACAATCTTTTGATAAGATGTGTTTTGTTGAGAGAATTTAGGTAACAGTTGGAGCATCATTCTTATCACAAACGATAGCTCTTCAAGATTCCACAACAGTGAAGTTTGAAATATGGGATACTGCTGGGCAAGAGAGGTAGAATTATCCAAATTCTTAGTTGGTATTTCGCATCCTCGAACATGTGTCTTTTAACTTCTTAGCAAGTAACAATATTCCCATTGGTAGCCCTTTTCTGTTTATTTTCAAGTTCACAAGAGCTTGTTGTTGCAAGAGGTTATAGCTGTTGATTTTTCTTGATTTAGGTATGCTGCATTAGCACCACTTTACTATAGAGGTGCTGCAGTTGCAGTTATTGTATATGATATAACAAGCTCCGATTCCTTTGCCAAAGCACAATATTGGGTTAAGGTATGTTTTAAATTGATGAGGTAGTTTCAGTCTTATATCATTAGTTGAGCATCCCACTCACCAGTGACCAAATTTAGAACAAAATGGAATTCTTTTTTATCGATGAGCACATTATCAGATAATTATACTCGTCACTATCTGTCTGTTTTCCCCTTGTACCTTCTCCTCATTTTTGGTTTACATGCATGGTATATGGATGTTTCGCATTTCCTTTGATGATCCTCAGTCCTGATTCTCTCACTCCGGCACTCCGATTTTTCATTCCAAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTGGGTTCAGATCAATCAATGCTGACCATGGTAACATTTGTAGTTGGACGTTAGAAAAGTGCCTACTTGCCCAAGGAACAACTGATTTTTTAAAACTTGTGGCTCTTTTTTGTTGAACTGATAACTATTTTAAAAAGGCTGTGTCTGTAAGCTACGATATTCACAATTCATATTGGGCACTTACAGGAGCTACAGAAGCATGGCAGCCCTGATATCATTTTGGCATTGGTCGGTAACAAAGCTGATCTTCAAGAGAAAAGGAAAGTAACTGTTCAGGTAAGTTCAGTGTTATTCAATCAAATGCATTTTCATTCTCTTCCTGTCTTCTTTATTTATTCTTAGTTCTAATTTGTTCTTTTTTCAAAATGGGGAAAGATATTTTAACTCACTAATGTGAGATATTTATGTTTCACTTTGAAGGATGGGACTGAGTATGCAGAGAAGAATGGAATGTTCTTTATCGAGACATCTGCGAAGACTGCAGATAATATAAATGAGCTGTTTGAGGTATTTCCGATTTTATCCTTTTTTGTACGACTTTCATAGCCTCTGTTCATAAACAAGCAAGGTGAATAATTGTGTATAGCAATTCTTTTATGATATTTCACTGTTGGCTGAGCGGTATTAAACATTTGAATGTTGCTGTTTAAGGTTGGAAGTTCCAGAACCTGCATAAGTCGTAGTCGTAGTTAGTAAACTTTATAATAGTCATTAGATTTGCGAAACTTTAGCAGCCAATTCTCTCTTGGTGATAGTGCTGAACTTAAAGAAGATGTGAGGTTGGAACGTTCTTTTACCCAGCTTTTGTTGGTGGTTGTATCTTTCATTATGCTATCTCCATAGGGTGTCAAATCAGGTTCCATGCTGCCAGAACGTTCATCTCAGGTCTCTTTTGGTGGTTCTATCATGATTGCTCAGCGCCACATTTAAAATCTGGCCCGCAGGAGGACAATTTTAATTGGAAATTTTCTGGCTATTAGCTCTTAGCTGACTTGTTGTTTGTTTGGATTGAAATGCTGTTTTTTTACCTCTGATTGGTCTGTAGTGCATGTTTTATTGAACGTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTAGTTCATGATTCTACTGTTAAAGGCTTAGGATTTTTCCTTTTTAAGTGTGCTGTTTTTGTTGAATGACGGATGACTGGTCCTCTGTAAATTAGTTAGTTTCTATATTTCATCCGAAAATTGAAATCTTTGAGTAACACATTTCATGGCTTGAGCTACGTGAAGACGTTCAATAGTTGGTTTGATCACTTAGCGATGAGAAACCCTGTCTCTTTCATATAAAGTTTCTCTTGTAATGTATGTCACTCATACTGAGAGGGGCAGTTTAAGATTCTTGGCTTTATAGATTCTGCTACATGTTTTTATTCACAATACACTTGGAGATCAACCAATTCTTCACTATTTGATTTGGCAGGAGATTGCGAAGCGGTTGCCACGACCAACTTCCTCATGATCCTACGCGACATGAATGATGTTGTCAACAGCTTATTTTAAAGGAAATCTGCCTGCTCTCATGTGATAGATATGTGTATAGTTTGGTGAGTCTGCAGTCTTTCGCTTTGTTATTTGATTTGACTAGTTGATACTTTCAGCCCAAAGTGTAACATTAAACAGATATGAAAATGGTGAAAGATTCATTCCCCTTTAAACCATAATCTGCAATGTAAACTATATTTCCTGAGACTGACAGAAAGATTACATAGGTTTTATTTCTTTTTCTTTTTAGATGTTCAAATGGGGATGGAGAAGTTTA

mRNA sequence

TTTTTCCATCTTCTCTTTCTGTCTTTATGCAGCTTGTCCTGCTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGATCCAACGTCTAAGGTAACAGTTGGAGCATCATTCTTATCACAAACGATAGCTCTTCAAGATTCCACAACAGTGAAGTTTGAAATATGGGATACTGCTGGGCAAGAGAGGTATGCTGCATTAGCACCACTTTACTATAGAGGTGCTGCAGTTGCAGTTATTGTATATGATATAACAAGCTCCGATTCCTTTGCCAAAGCACAATATTGGGTTAAGGAGCTACAGAAGCATGGCAGCCCTGATATCATTTTGGCATTGGTCGGTAACAAAGCTGATCTTCAAGAGAAAAGGAAAGTAACTGTTCAGGATGGGACTGAGTATGCAGAGAAGAATGGAATGTTCTTTATCGAGACATCTGCGAAGACTGCAGATAATATAAATGAGCTGTTTGAGGAGATTGCGAAGCGGTTGCCACGACCAACTTCCTCATGATCCTACGCGACATGAATGATGTTGTCAACAGCTTATTTTAAAGGAAATCTGCCTGCTCTCATGTGATAGATATGTGTATAGTTTGGTGAGTCTGCAGTCTTTCGCTTTGTTATTTGATTTGACTAGTTGATACTTTCAGCCCAAAGTGTAACATTAAACAGATATGAAAATGGTGAAAGATTCATTCCCCTTTAAACCATAATCTGCAATGTAAACTATATTTCCTGAGACTGACAGAAAGATTACATAGGTTTTATTTCTTTTTCTTTTTAGATGTTCAAATGGGGATGGAGAAGTTTA

Coding sequence (CDS)

ATGCAGCTTGTCCTGCTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGATCCAACGTCTAAGGTAACAGTTGGAGCATCATTCTTATCACAAACGATAGCTCTTCAAGATTCCACAACAGTGAAGTTTGAAATATGGGATACTGCTGGGCAAGAGAGGTATGCTGCATTAGCACCACTTTACTATAGAGGTGCTGCAGTTGCAGTTATTGTATATGATATAACAAGCTCCGATTCCTTTGCCAAAGCACAATATTGGGTTAAGGAGCTACAGAAGCATGGCAGCCCTGATATCATTTTGGCATTGGTCGGTAACAAAGCTGATCTTCAAGAGAAAAGGAAAGTAACTGTTCAGGATGGGACTGAGTATGCAGAGAAGAATGGAATGTTCTTTATCGAGACATCTGCGAAGACTGCAGATAATATAAATGAGCTGTTTGAGGAGATTGCGAAGCGGTTGCCACGACCAACTTCCTCATGA

Protein sequence

MQLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAKRLPRPTSS*

Homology

[Close]

BLAST of Cucsa.137500 vs. Swiss-Prot
Match: RABF1_ARATH (Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 9.8e-90
Identity = 170/201 (84.58%), Postives = 181/201 (90.05%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGL-NPENSA-ADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+SS+PDR SG   GL N EN+  AD+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct: 1   MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAVIVYDITS +
Sbjct: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query: 121 SFAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDI++ALVGNKADL EKR+V  +DG E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180

Query: 181 ADNINELFEEIAKRLPRPTSS 200
           ADNIN+LFEEI KRLPRP  S
Sbjct: 181 ADNINQLFEEIGKRLPRPAPS 201

[Close]

BLAST of Cucsa.137500 vs. Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.0e-59
Identity = 110/173 (63.58%), Postives = 144/173 (83.24%), Query Frame = 1


Query: 23  SAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 82
           +++   NL  KLVLLGD G GKS +V+RFV+GQF    + T+GA+F S T+A+ ++ TVK
Sbjct: 2   ASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAV-NNATVK 61

Query: 83  FEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQKHGSPDIILAL 142
           FEIWDTAGQERY +LAP+YYRGAA A+IVYDITSSDSFA+A+ WV+ELQK G+P++++AL
Sbjct: 62  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 121

Query: 143 VGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAKRLPR 196
            GNKADL+++RKVT ++   YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR
Sbjct: 122 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPR 173

[Close]

BLAST of Cucsa.137500 vs. Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 111/184 (60.33%), Postives = 142/184 (77.17%), Query Frame = 1


Query: 12  SGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 71
           +GR G   P   AA +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q
Sbjct: 2   AGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 61

Query: 72  TIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQ 131
           T+ L D TTVKFEIWDTAGQERY +LAP+YYRGA  A++VYDIT++D+FA+A+ WVKELQ
Sbjct: 62  TVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 121

Query: 132 KHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAK 191
           +  SP+I++AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+NE+F  IAK
Sbjct: 122 RQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAK 181

Query: 192 RLPR 196
           +LP+
Sbjct: 182 KLPK 184

[Close]

BLAST of Cucsa.137500 vs. Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 226.1 bits (575), Expect = 3.4e-58
Identity = 110/184 (59.78%), Postives = 142/184 (77.17%), Query Frame = 1


Query: 12  SGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 71
           +GR G   P   AA +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q
Sbjct: 2   AGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 61

Query: 72  TIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQ 131
           T+ L D TTVKFEIWDTAGQERY +LAP+YYRGA  A++VYDIT++D+FA+A+ WVKELQ
Sbjct: 62  TVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 121

Query: 132 KHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAK 191
           +  SP+I++AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+NE+F  IAK
Sbjct: 122 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 181

Query: 192 RLPR 196
           +LP+
Sbjct: 182 KLPK 184

[Close]

BLAST of Cucsa.137500 vs. Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.4e-58
Identity = 110/184 (59.78%), Postives = 142/184 (77.17%), Query Frame = 1


Query: 12  SGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 71
           +GR G   P   AA +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q
Sbjct: 2   AGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ 61

Query: 72  TIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQ 131
           T+ L D TTVKFEIWDTAGQERY +LAP+YYRGA  A++VYDIT++D+FA+A+ WVKELQ
Sbjct: 62  TVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 121

Query: 132 KHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAK 191
           +  SP+I++AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+NE+F  IAK
Sbjct: 122 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 181

Query: 192 RLPR 196
           +LP+
Sbjct: 182 KLPK 184

[Close]

BLAST of Cucsa.137500 vs. TrEMBL
Match: A0A0A0KJ92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G406530 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 6.8e-106
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFEEIAKRLPRPTSS 200
           NINELFEEIAKRLPRPTSS
Sbjct: 181 NINELFEEIAKRLPRPTSS 199

[Close]

BLAST of Cucsa.137500 vs. TrEMBL
Match: A0A068TWQ4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029468001 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 6.4e-96
Identity = 181/200 (90.50%), Postives = 191/200 (95.50%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPEN-SAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60
           MGCSSS+PDR SGR GGLNPEN SA DSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1   MGCSSSLPDRNSGRLGGLNPENGSANDSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60

Query: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDS 120
           SKVT+GASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITS +S
Sbjct: 61  SKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPES 120

Query: 121 FAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTA 180
           FAKAQYWVKELQKHGSP +I+ALVGNKADLQEKR+V+ QDG EYAEKNGMFFIETSAKTA
Sbjct: 121 FAKAQYWVKELQKHGSPGMIMALVGNKADLQEKREVSAQDGMEYAEKNGMFFIETSAKTA 180

Query: 181 DNINELFEEIAKRLPRPTSS 200
           DNIN+LFEEIAKRLPRP +S
Sbjct: 181 DNINQLFEEIAKRLPRPPAS 200

[Close]

BLAST of Cucsa.137500 vs. TrEMBL
Match: A0A059BHW6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02863 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.1e-95
Identity = 179/200 (89.50%), Postives = 190/200 (95.00%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSAA-DSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60
           MGCSSS+PDRASGR GGLN EN A  D+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1   MGCSSSLPDRASGRLGGLNSENGAVNDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60

Query: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDS 120
           SKVT+GASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITS +S
Sbjct: 61  SKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPES 120

Query: 121 FAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTA 180
           F KAQYWVKELQKHGSPD+++ALVGNKADLQE R+VTVQDG +YAEKNGMFFIETSAKTA
Sbjct: 121 FQKAQYWVKELQKHGSPDMVMALVGNKADLQENREVTVQDGIDYAEKNGMFFIETSAKTA 180

Query: 181 DNINELFEEIAKRLPRPTSS 200
           DNIN+LFEEIAKRLPRPT S
Sbjct: 181 DNINQLFEEIAKRLPRPTPS 200

[Close]

BLAST of Cucsa.137500 vs. TrEMBL
Match: A5BW15_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04680 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.5e-94
Identity = 178/200 (89.00%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSAA-DSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60
           MGCSSS+PDR SGR GGLN EN  A D+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1   MGCSSSLPDRNSGRLGGLNAENGGAPDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60

Query: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDS 120
           SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITS +S
Sbjct: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPES 120

Query: 121 FAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTA 180
           F KAQYWVKELQKHGSPDI++ALVGNKADL E R+V VQDG +YAEKNGMFFIETSAKTA
Sbjct: 121 FNKAQYWVKELQKHGSPDIVMALVGNKADLHENREVPVQDGIDYAEKNGMFFIETSAKTA 180

Query: 181 DNINELFEEIAKRLPRPTSS 200
           DNIN+LFEEIAKRLPRP+SS
Sbjct: 181 DNINQLFEEIAKRLPRPSSS 200

[Close]

BLAST of Cucsa.137500 vs. TrEMBL
Match: A0A067KF37_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16153 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.0e-93
Identity = 178/201 (88.56%), Postives = 188/201 (93.53%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSA--ADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGCSSS+PDR SGR GGLN   S+  +D+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1   MGCSSSLPDRTSGRLGGLNNSESSGVSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSD 120
           TSKVT+GASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITS +
Sbjct: 61  TSKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE 120

Query: 121 SFAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDI+LALVGNKADL E R+V VQDG EYAEKNGMFFIETSAKT
Sbjct: 121 SFNKAQYWVKELQKHGSPDIVLALVGNKADLHENREVPVQDGMEYAEKNGMFFIETSAKT 180

Query: 181 ADNINELFEEIAKRLPRPTSS 200
           ADNIN+LFEEIAKRLPRP+SS
Sbjct: 181 ADNINQLFEEIAKRLPRPSSS 201

[Close]

BLAST of Cucsa.137500 vs. TAIR10
Match: AT3G54840.1 (AT3G54840.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 330.9 bits (847), Expect = 5.5e-91
Identity = 170/201 (84.58%), Postives = 181/201 (90.05%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGL-NPENSA-ADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
           MGC+SS+PDR SG   GL N EN+  AD+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD 
Sbjct: 1   MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60

Query: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSD 120
           TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAVIVYDITS +
Sbjct: 61  TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120

Query: 121 SFAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKT 180
           SF KAQYWVKELQKHGSPDI++ALVGNKADL EKR+V  +DG E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180

Query: 181 ADNINELFEEIAKRLPRPTSS 200
           ADNIN+LFEEI KRLPRP  S
Sbjct: 181 ADNINQLFEEIGKRLPRPAPS 201

[Close]

BLAST of Cucsa.137500 vs. TAIR10
Match: AT4G19640.1 (AT4G19640.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 218.0 bits (554), Expect = 5.2e-57
Identity = 104/173 (60.12%), Postives = 140/173 (80.92%), Query Frame = 1


Query: 23  SAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 82
           +AA +K++  KLVLLGD G GKS +VLRFV+ QF    + T+GA+F SQT+A+ D+ TVK
Sbjct: 2   AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDA-TVK 61

Query: 83  FEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQKHGSPDIILAL 142
           FEIWDTAGQERY +LAP+YYRGAA A+IV+D+T+  SF +A+ WV+ELQ  G+P++++AL
Sbjct: 62  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 121

Query: 143 VGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAKRLPR 196
            GNK+DL + RKVT +D   YA++NG+FF+ETSAKTA N+ E+F EIA+RLPR
Sbjct: 122 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 173

[Close]

BLAST of Cucsa.137500 vs. TAIR10
Match: AT5G45130.1 (AT5G45130.1 RAB homolog 1)

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-55
Identity = 102/173 (58.96%), Postives = 139/173 (80.35%), Query Frame = 1


Query: 23  SAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 82
           +++ +KN+  KLVLLGD G GKS +VLRFV+ QF    + T+GA+F SQT+A+ D+ TVK
Sbjct: 2   ASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDA-TVK 61

Query: 83  FEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQKHGSPDIILAL 142
           FEIWDTAGQERY +LAP+YYRGAA A+IV+DIT+  SF +A+ WV+ELQ  G+P++++AL
Sbjct: 62  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 121

Query: 143 VGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAKRLPR 196
            GNKADL + RKV+ ++   YA++N +FF+ETSAKTA N+ ++F EIAKRLPR
Sbjct: 122 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173

[Close]

BLAST of Cucsa.137500 vs. TAIR10
Match: AT2G22290.1 (AT2G22290.1 RAB GTPase homolog H1D)

HSP 1 Score: 159.5 bits (402), Expect = 2.2e-39
Identity = 79/171 (46.20%), Postives = 115/171 (67.25%), Query Frame = 1


Query: 24  AADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 83
           A+ S   + KLV LGD  VGK+ I+ RF+  +FD T + T+G  FLS+T+ L+D T V+ 
Sbjct: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-VRL 61

Query: 84  EIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQKHGSPDIILALV 143
           ++WDTAGQER+ +L P Y R ++VAV+VYD+ +  SF     W++E++   + D+I+ LV
Sbjct: 62  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 121

Query: 144 GNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAKRLP 195
           GNK DL EKR+V++++G     + G+ FIETSAK   NI  LF +IA  LP
Sbjct: 122 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALP 171

[Close]

BLAST of Cucsa.137500 vs. TAIR10
Match: AT5G10260.1 (AT5G10260.1 RAB GTPase homolog H1E)

HSP 1 Score: 159.5 bits (402), Expect = 2.2e-39
Identity = 79/171 (46.20%), Postives = 114/171 (66.67%), Query Frame = 1


Query: 24  AADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 83
           A+ S   + KLV LGD  VGK+ I+ RF+  +FD T + T+G  FLS+T+ L+D T V+ 
Sbjct: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-VRL 61

Query: 84  EIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSFAKAQYWVKELQKHGSPDIILALV 143
           ++WDTAGQER+ +L P Y R ++VAVIVYD+ +  SF     W+++++     D+I+ LV
Sbjct: 62  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 121

Query: 144 GNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTADNINELFEEIAKRLP 195
           GNK DL +KR+V++++G   A   G+ FIETSAK   NI  LF +IA  LP
Sbjct: 122 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALP 171

[Close]

BLAST of Cucsa.137500 vs. NCBI nr
Match: gi|449444622|ref|XP_004140073.1| (PREDICTED: ras-related protein RABF1 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 9.8e-106
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFEEIAKRLPRPTSS 200
           NINELFEEIAKRLPRPTSS
Sbjct: 181 NINELFEEIAKRLPRPTSS 199

[Close]

BLAST of Cucsa.137500 vs. NCBI nr
Match: gi|659113325|ref|XP_008456515.1| (PREDICTED: ras-related protein RABF1 [Cucumis melo])

HSP 1 Score: 389.8 bits (1000), Expect = 2.9e-105
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60
           MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS
Sbjct: 1   MGCSSSVPDRASGRSGGLNPENSAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS 60

Query: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120
           KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF
Sbjct: 61  KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDSF 120

Query: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTAD 180
           AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKV+VQDGTEYAEKNGMFFIETSAKTAD
Sbjct: 121 AKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVSVQDGTEYAEKNGMFFIETSAKTAD 180

Query: 181 NINELFEEIAKRLPRPTSS 200
           NINELFEEIAKRLPRPTSS
Sbjct: 181 NINELFEEIAKRLPRPTSS 199

[Close]

BLAST of Cucsa.137500 vs. NCBI nr
Match: gi|661896589|emb|CDO99778.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 358.2 bits (918), Expect = 9.2e-96
Identity = 181/200 (90.50%), Postives = 191/200 (95.50%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPEN-SAADSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60
           MGCSSS+PDR SGR GGLNPEN SA DSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1   MGCSSSLPDRNSGRLGGLNPENGSANDSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60

Query: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDS 120
           SKVT+GASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITS +S
Sbjct: 61  SKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPES 120

Query: 121 FAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTA 180
           FAKAQYWVKELQKHGSP +I+ALVGNKADLQEKR+V+ QDG EYAEKNGMFFIETSAKTA
Sbjct: 121 FAKAQYWVKELQKHGSPGMIMALVGNKADLQEKREVSAQDGMEYAEKNGMFFIETSAKTA 180

Query: 181 DNINELFEEIAKRLPRPTSS 200
           DNIN+LFEEIAKRLPRP +S
Sbjct: 181 DNINQLFEEIAKRLPRPPAS 200

[Close]

BLAST of Cucsa.137500 vs. NCBI nr
Match: gi|702423697|ref|XP_010067332.1| (PREDICTED: ras-related protein RABF1 [Eucalyptus grandis])

HSP 1 Score: 357.5 bits (916), Expect = 1.6e-95
Identity = 179/200 (89.50%), Postives = 190/200 (95.00%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSAA-DSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60
           MGCSSS+PDRASGR GGLN EN A  D+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1   MGCSSSLPDRASGRLGGLNSENGAVNDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60

Query: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDS 120
           SKVT+GASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITS +S
Sbjct: 61  SKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPES 120

Query: 121 FAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTA 180
           F KAQYWVKELQKHGSPD+++ALVGNKADLQE R+VTVQDG +YAEKNGMFFIETSAKTA
Sbjct: 121 FQKAQYWVKELQKHGSPDMVMALVGNKADLQENREVTVQDGIDYAEKNGMFFIETSAKTA 180

Query: 181 DNINELFEEIAKRLPRPTSS 200
           DNIN+LFEEIAKRLPRPT S
Sbjct: 181 DNINQLFEEIAKRLPRPTPS 200

[Close]

BLAST of Cucsa.137500 vs. NCBI nr
Match: gi|225448984|ref|XP_002270699.1| (PREDICTED: ras-related protein RABF1 [Vitis vinifera])

HSP 1 Score: 352.4 bits (903), Expect = 5.0e-94
Identity = 178/200 (89.00%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 1   MGCSSSVPDRASGRSGGLNPENSAA-DSKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60
           MGCSSS+PDR SGR GGLN EN  A D+KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1   MGCSSSLPDRNSGRLGGLNAENGGAPDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60

Query: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSSDS 120
           SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV+VYDITS +S
Sbjct: 61  SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPES 120

Query: 121 FAKAQYWVKELQKHGSPDIILALVGNKADLQEKRKVTVQDGTEYAEKNGMFFIETSAKTA 180
           F KAQYWVKELQKHGSPDI++ALVGNKADL E R+V VQDG +YAEKNGMFFIETSAKTA
Sbjct: 121 FNKAQYWVKELQKHGSPDIVMALVGNKADLHENREVPVQDGIDYAEKNGMFFIETSAKTA 180

Query: 181 DNINELFEEIAKRLPRPTSS 200
           DNIN+LFEEIAKRLPRP+SS
Sbjct: 181 DNINQLFEEIAKRLPRPSSS 200

The following BLAST results are available for this feature:

BLAST of Cucsa.137500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RABF1_ARATH	9.8e-90	84.58	Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1	[more]
RHN1_NICPL	4.0e-59	63.58	Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1	[more]
RAB5C_BOVIN	1.5e-58	60.33	Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1	[more]
RAB5C_HUMAN	3.4e-58	59.78	Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2	[more]
RAB5C_PONAB	3.4e-58	59.78	Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1	[more]

BLAST of Cucsa.137500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ92_CUCSA	6.8e-106	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G406530 PE=4 SV=1	[more]
A0A068TWQ4_COFCA	6.4e-96	90.50	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029468001 PE=4 SV=1	[more]
A0A059BHW6_EUCGR	1.1e-95	89.50	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02863 PE=4 SV=1	[more]
A5BW15_VITVI	3.5e-94	89.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04680 PE=4 SV=...	[more]
A0A067KF37_JATCU	1.0e-93	88.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16153 PE=4 SV=1	[more]

BLAST of Cucsa.137500 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54840.1	5.5e-91	84.58	Ras-related small GTP-binding family protein	[more]
AT4G19640.1	5.2e-57	60.12	Ras-related small GTP-binding family protein	[more]
AT5G45130.1	1.7e-55	58.96	RAB homolog 1	[more]
AT2G22290.1	2.2e-39	46.20	RAB GTPase homolog H1D	[more]
AT5G10260.1	2.2e-39	46.20	RAB GTPase homolog H1E	[more]

BLAST of Cucsa.137500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444622\|ref\|XP_004140073.1\|	9.8e-106	100.00	PREDICTED: ras-related protein RABF1 [Cucumis sativus]	[more]
gi\|659113325\|ref\|XP_008456515.1\|	2.9e-105	99.50	PREDICTED: ras-related protein RABF1 [Cucumis melo]	[more]
gi\|661896589\|emb\|CDO99778.1\|	9.2e-96	90.50	unnamed protein product [Coffea canephora]	[more]
gi\|702423697\|ref\|XP_010067332.1\|	1.6e-95	89.50	PREDICTED: ras-related protein RABF1 [Eucalyptus grandis]	[more]
gi\|225448984\|ref\|XP_002270699.1\|	5.0e-94	89.00	PREDICTED: ras-related protein RABF1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0005525	GTP binding
GO:0005525	GTP binding
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction
GO:0007264	small GTPase mediated signal transduction
GO:0007264	small GTPase mediated signal transduction
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045022	early endosome to late endosome transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0010009	cytoplasmic side of endosome membrane
cellular_component	GO:0005769	early endosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.137500.4	Cucsa.137500.4	mRNA
Cucsa.137500.3	Cucsa.137500.3	mRNA
Cucsa.137500.2	Cucsa.137500.2	mRNA
Cucsa.137500.1	Cucsa.137500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 3..162 score: 2.9
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 2..158 score: 2.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..165 score: 1.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..166 score: 1.77
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 43..65 score: 1.8E-37coord: 1..22 score: 1.8E-37coord: 105..118 score: 1.8E-37coord: 24..40 score: 1.8E-37coord: 140..162 score: 1.8
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..164 score: 1.7
None	No IPR available	PANTHER	PTHR24073:SF485	RAS-RELATED PROTEIN RABJ	coord: 1..164 score: 1.7
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 3..165 score: 5.0
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 3..165 score: 1.2
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 1..165 score: 1.3
None	No IPR available	PROFILE	PS51419	RAB	coord: 1..168 score: 32

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.137500	Csa6G406530	Cucumber (Chinese Long) v2	cgycuB197
Cucsa.137500	MELO3C019819	Melon (DHL92) v3.5.1	cgymeB225
Cucsa.137500	CSPI06G21570	Wild cucumber (PI 183967)	cgycpiB200
Cucsa.137500	CmaCh15G004770	Cucurbita maxima (Rimu)	cgycmaB0382
Cucsa.137500	CmaCh04G025610	Cucurbita maxima (Rimu)	cgycmaB0383
Cucsa.137500	CmaCh15G005120	Cucurbita maxima (Rimu)	cgycmaB0381
Cucsa.137500	CmoCh04G026800	Cucurbita moschata (Rifu)	cgycmoB0381
Cucsa.137500	CmoCh15G005200	Cucurbita moschata (Rifu)	cgycmoB0378
Cucsa.137500	CmoCh15G004860	Cucurbita moschata (Rifu)	cgycmoB0379
Cucsa.137500	Lsi08G007060	Bottle gourd (USVL1VR-Ls)	cgylsiB220
Cucsa.137500	Cp4.1LG13g10070	Cucurbita pepo (Zucchini)	cgycpeB0370
Cucsa.137500	Cp4.1LG13g10460	Cucurbita pepo (Zucchini)	cgycpeB0371
Cucsa.137500	Cp4.1LG01g24510	Cucurbita pepo (Zucchini)	cgycpeB0372
Cucsa.137500	MELO3C019819.2	Melon (DHL92) v3.6.1	cgymedB224
Cucsa.137500	CsaV3_6G036650	Cucumber (Chinese Long) v3	cgycucB205
Cucsa.137500	Cla97C08G150440	Watermelon (97103) v2	cgywmbB231
Cucsa.137500	Bhi04G001071	Wax gourd	cgywgoB268
Cucsa.137500	Carg01686	Silver-seed gourd	carcgyB0946
Cucsa.137500	Carg02421	Silver-seed gourd	carcgyB0308
Cucsa.137500	Carg04572	Silver-seed gourd	carcgyB0762

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.137500	Watermelon (Charleston Gray)	cgywcgB230
Cucsa.137500	Watermelon (97103) v1	cgywmB238