Cucsa.118810 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.118810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NAD(P)H-quinone oxidoreductase subunit N
Location	scaffold00998 : 680499 .. 682798 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCTCAACAATGGCATCTCCATGACTTCCACCTCCTCTTAATTTCCAATCCAATTCCTCATCCATGGCCTTCTTTCTTTCTCCTACCCTCATTCTTCCTTCTACATTCCGTTTCTTTTTCACAAAACCCCAACCATGGCCCCTCTAGCCTCCATGTTCAACGGAGCACCCCTAGCGCCACCGCTCCATTTTCACTCAAGTCGCCACCACCCACTCACCTCGCCCGCGATGCTGCCGATTAACAATCGCCGGTCGAGTTTACGCCCCGGCAACGGCAGAGCCGCGACGGTCAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGTGGCGATTTGCTTAAATTTGACCTTGGGCAATGGTTATCGGATGTGGAGGAACACAAAGCTTTAGCAATTTACTCGCCGCATGAAGGCGGATACGAAGGCCGATACTTAAATCGCCTCCGTTACCAAGGCTATTACTTCCTCGATCTGTCCGCTCGCGGTCTCGGCGATCCCGAGACCACTCTCACCAAGATTCACCCTGTTTGCCCTGTCCGTTGAATCGAATACTTACAGCTGATTCAATTTGATTAGTTTTTCTTTTTTTTTTTAGGGTTTGTTCGATTGTTGTTCTTACTTTGGGGTTCGAATTGCAGGCTCATTTGGGGAAGCAGCCTATTGCACGGTGGTATTTTCCGCCGGAAGTTGATTACAGGTTGGCGGCGCTGCCTCCGAACGCTAAGGGACTGGTCGTGTGGATAATCGAGGCTAAGGTGAGATTATTTGAACTGCCATTAGATTAACGATTCAGAAAGAAGTAGTTTGAGAAAAAAAAAGGATTACCGAATTGGAAACATTGATCAGGTTCTTTCCAAGGCGGAGTTGCAATTCCTTGCTTTGCTGCCGACTCTCCGGCCGAAAGTCCGAGTCATTGCCGAGTGCGGGAATTGGTACGTTTCTTTGTTGGTCTCTCATTGTCCACTTCGGAATGAAGTGAATCAATGTGCAATACATAGTTTTATAAATTTGGTTCAAACTTAGAAAATTACCCTTTTTTGAAATTGAGGAATGATTGATGTGAGTAAATATGGGGAAGAAAGACATGCAGATTTCTAATAGCACATTTCAGGCCCGAAGTTGGTTATTATAATCATAGATTATTAGTGTTGGATTATGATAGTTTGTGTTTAGAGGTGTACATTATTTTAATATATATCACAATAGTATGTGTTTGCGGAATAAATTATTTTAGTTTAAAAAAACTAAAAGTTATAATAAATAATAAAAATACAATGAATGTAAAGTGGTAAAAGATTACCAAATAGTAAATATTAAAGCAAAGGAGAAGTTTTGAAATAGTATTAAATATAGTTAATTGAGAATTACAAAATAGTATTTACTATAGCAAATGATGATTGCTATAGTATTTGATAATCATTTATTCAAACATCTCTTCAATGTTTATAAACACTTAAAAAAACGAAACGAACATAGATCAATAATGACGAACATGTACTAATATGTATTCCTCCTTTCAGAGTTTGGGAGTTAAAATCTTAACCATCATTATATTAAGAAGAAGAAGAGAGAAAAATCGGGGTGGAGTAGGTGTTTAACTGCGGCTTTGCCTATGTTGGTTTGCGAAATGCTTTGAATATTGGGTATTAAAATTTGTAATGGTTCTTAATCAGGAGCAGGGTGATTTTTAGAGAAGGGAAAACCTTGGGAAAAAATTCTTAGTTGAAAAGCAAACAAATAAATTCATTAGAAATCGTTCTACTAGGTCTTCTCATCTTTTTAGTTTTTATTGGATCATCAATAAAATCGTTCGACTAGGTCTTCACATTCTATTTTATGACAATACTTATTTAGGTTTGTCATTCATGCACTCATATTATATTAGATTAACGTAGTATTACATCTTAAAACTAATTGACAATGAGATTTCCTTCCTCTTTTTCACACAAACAAATTTTTTTGTAAAATTTATATCTTTTCTAACCTGAGATACTTAAATGGGAAGATTGACTTTATTTTTGTAGGAGAAAGTTCATGTGGAAACCGCTCAAGGAGATTGCAGGAGCTTGAAGACGCTTCTTAATGACTGGAGGAATAGAAGATTAATTCCTCCCTCAACATGAAGAATACAGTTTTTTTTTTAATCTCAAGTAATTAGCTCAAAATTATTGGTTAAATAGTTCAGCAGTGCACATTCCACCAGTCCCCAAGTTGAAAAGGAAGAAAATTAGTATTATTTAGAGTAAAATTGCAAATAATATGATTGTACTTTCATGCAATTATTGTTACCTCAAAGAA

mRNA sequence

AAAACCTCAACAATGGCATCTCCATGACTTCCACCTCCTCTTAATTTCCAATCCAATTCCTCATCCATGGCCTTCTTTCTTTCTCCTACCCTCATTCTTCCTTCTACATTCCGTTTCTTTTTCACAAAACCCCAACCATGGCCCCTCTAGCCTCCATGTTCAACGGAGCACCCCTAGCGCCACCGCTCCATTTTCACTCAAGTCGCCACCACCCACTCACCTCGCCCGCGATGCTGCCGATTAACAATCGCCGGTCGAGTTTACGCCCCGGCAACGGCAGAGCCGCGACGGTCAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGTGGCGATTTGCTTAAATTTGACCTTGGGCAATGGTTATCGGATGTGGAGGAACACAAAGCTTTAGCAATTTACTCGCCGCATGAAGGCGGATACGAAGGCCGATACTTAAATCGCCTCCGTTACCAAGGCTATTACTTCCTCGATCTGTCCGCTCGCGGTCTCGGCGATCCCGAGACCACTCTCACCAAGATTCACCCTGTTTGCCCTGCTCATTTGGGGAAGCAGCCTATTGCACGGTGGTATTTTCCGCCGGAAGTTGATTACAGGTTGGCGGCGCTGCCTCCGAACGCTAAGGGACTGGTCGTGTGGATAATCGAGGCTAAGGTTCTTTCCAAGGCGGAGTTGCAATTCCTTGCTTTGCTGCCGACTCTCCGGCCGAAAGTCCGAGTCATTGCCGAGTGCGGGAATTGGAGAAAGTTCATGTGGAAACCGCTCAAGGAGATTGCAGGAGCTTGAAGACGCTTCTTAATGACTGGAGGAATAGAAGATTAATTCCTCCCTCAACATGAAGAATACAGTTTTTTTTTTAATCTCAAGTAATTAGCTCAAAATTATTGGTTAAATAGTTCAGCAGTGCACATTCCACCAGTCCCCAAGTTGAAAAGGAAGAAAATTAGTATTATTTAGAGTAAAATTGCAAATAATATGATTGTACTTTCATGCAATTATTGTTACCTCAAAGAA

Coding sequence (CDS)

ATGGCCCCTCTAGCCTCCATGTTCAACGGAGCACCCCTAGCGCCACCGCTCCATTTTCACTCAAGTCGCCACCACCCACTCACCTCGCCCGCGATGCTGCCGATTAACAATCGCCGGTCGAGTTTACGCCCCGGCAACGGCAGAGCCGCGACGGTCAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGTGGCGATTTGCTTAAATTTGACCTTGGGCAATGGTTATCGGATGTGGAGGAACACAAAGCTTTAGCAATTTACTCGCCGCATGAAGGCGGATACGAAGGCCGATACTTAAATCGCCTCCGTTACCAAGGCTATTACTTCCTCGATCTGTCCGCTCGCGGTCTCGGCGATCCCGAGACCACTCTCACCAAGATTCACCCTGTTTGCCCTGCTCATTTGGGGAAGCAGCCTATTGCACGGTGGTATTTTCCGCCGGAAGTTGATTACAGGTTGGCGGCGCTGCCTCCGAACGCTAAGGGACTGGTCGTGTGGATAATCGAGGCTAAGGTTCTTTCCAAGGCGGAGTTGCAATTCCTTGCTTTGCTGCCGACTCTCCGGCCGAAAGTCCGAGTCATTGCCGAGTGCGGGAATTGGAGAAAGTTCATGTGGAAACCGCTCAAGGAGATTGCAGGAGCTTGA

Protein sequence

MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA*

Homology

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BLAST of Cucsa.118810 vs. Swiss-Prot
Match: NDHN_ARATH (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana GN=ndhN PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.9e-78
Identity = 142/201 (70.65%), Postives = 165/201 (82.09%), Query Frame = 1


Query: 13  LAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIGDFIGGDLLKFDL 72
           +APP  F +S+   + +     +N R         R+  V+C  I   D+IGGDL+K D+
Sbjct: 11  VAPPC-FEASQVKKIKTVGSFLVNTRSK-----RRRSTGVKCSSIA--DYIGGDLVKPDI 70

Query: 73  GQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVC 132
           GQWL DVEEHKA+AIY+PHEGGYEGRYLNRL+ QGYYFLD+SARGLGDPETTL K +PVC
Sbjct: 71  GQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGDPETTLLKNYPVC 130

Query: 133 PAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKV 192
           PAHLGKQPIARWY+PPEVDYRLAALPP+AKGLVVW++EAKVLSK+ELQFLALLP+LRP V
Sbjct: 131 PAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKVLSKSELQFLALLPSLRPNV 190

Query: 193 RVIAECGNWRKFMWKPLKEIA 214
           RVIAECGNWRKF+WKPL EIA
Sbjct: 191 RVIAECGNWRKFVWKPLAEIA 203

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BLAST of Cucsa.118810 vs. Swiss-Prot
Match: NDHN_CYAP4 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-34
Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 1


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 133
           Q++ D+E+  AL IY P EGG+EGRY  RLR  GY  L +SA GLGD  + LT++H V P
Sbjct: 9   QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRP 68

Query: 134 AHLGKQP-------IARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGK         +  ++ PP V+Y L  LPP A+GLV+W+I+ K LS+ EL +L++LP
Sbjct: 69  PHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
              PKV+++ E G  R+F W+PLKE+A A
Sbjct: 129 AQEPKVKIVIELGGDRQFRWQPLKEMAAA 157

[Close]

BLAST of Cucsa.118810 vs. Swiss-Prot
Match: NDHN_CYAP8 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 8801) GN=ndhN PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 1


Query: 79  VEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHLGK 138
           +E+  +LA+Y+P EGG+EGRY  RLR  GY+   L+ARGLGD    L  +H V P HLGK
Sbjct: 14  LEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPPHLGK 73

Query: 139 QPIAR-------WYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPK 198
           + I +       ++ PP   Y+L  LPP +KGLV+WI+E  +LS+ EL++LA LPTL P+
Sbjct: 74  KNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPTLEPR 133

Query: 199 VRVIAECGNWRKFMWKPLKEI 213
           ++V+ E G  R F WKPL E+
Sbjct: 134 LKVVIELGGERYFSWKPLPEV 154

[Close]

BLAST of Cucsa.118810 vs. Swiss-Prot
Match: NDHN_SYNE7 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942) GN=ndhN PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-31
Identity = 74/149 (49.66%), Postives = 91/149 (61.07%), Query Frame = 1


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 133
           ++L  +E+  ALA+Y+P EGGYEGRYL RLR +GY  L  SARGLGDP   L  IH V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 134 AHLGKQPIAR-------WYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGKQ I          Y  P V Y L  LP NAKGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
              P+++V+ E G  R F W+PL  +A A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVAEA 157

[Close]

BLAST of Cucsa.118810 vs. Swiss-Prot
Match: NDHN_SYNP6 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhN PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-31
Identity = 74/149 (49.66%), Postives = 91/149 (61.07%), Query Frame = 1


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 133
           ++L  +E+  ALA+Y+P EGGYEGRYL RLR +GY  L  SARGLGDP   L  IH V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 134 AHLGKQPIAR-------WYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGKQ I          Y  P V Y L  LP NAKGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
              P+++V+ E G  R F W+PL  +A A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVAEA 157

[Close]

BLAST of Cucsa.118810 vs. TrEMBL
Match: A0A0A0KEC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133810 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 7.8e-124
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60
           MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG
Sbjct: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 215

[Close]

BLAST of Cucsa.118810 vs. TrEMBL
Match: A0A067LEK8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17275 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89
Identity = 166/205 (80.98%), Postives = 176/205 (85.85%), Query Frame = 1


Query: 10  GAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIGDFIGGDLLK 69
           G+P    LH  ++R   +    MLP      + R   G    V+C GIGI DFIGGDLLK
Sbjct: 11  GSPSFVNLHNPTTRIAGIKRNIMLPTGGEAWTTRGRTG-IRVVKCSGIGIEDFIGGDLLK 70

Query: 70  FDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIH 129
           FDLG+WLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIH
Sbjct: 71  FDLGRWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIH 130

Query: 130 PVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLR 189
           PVCPAHLGKQPIARWYFPPEVDYRLAALPP+AKGLVVWIIEAKVLSKAELQFLALLP+LR
Sbjct: 131 PVCPAHLGKQPIARWYFPPEVDYRLAALPPDAKGLVVWIIEAKVLSKAELQFLALLPSLR 190

Query: 190 PKVRVIAECGNWRKFMWKPLKEIAG 215
           PKVRVIAECGNWRKF+WKPLKEIAG
Sbjct: 191 PKVRVIAECGNWRKFVWKPLKEIAG 214

[Close]

BLAST of Cucsa.118810 vs. TrEMBL
Match: A0A061GZ91_THECC (NAD(P)H-quinone oxidoreductase subunit N OS=Theobroma cacao GN=TCM_042316 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.9e-88
Identity = 162/201 (80.60%), Postives = 173/201 (86.07%), Query Frame = 1


Query: 16  PLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCE--GIGIGDFIGGDLLKFDLG 75
           P+ F +++ H  TS +              N R   V+C   GIGIGDFIGGDLL+FDLG
Sbjct: 27  PMPFRATQGHSKTSKS--------------NRRGLMVKCSGSGIGIGDFIGGDLLRFDLG 86

Query: 76  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 135
           +WLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP
Sbjct: 87  RWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 146

Query: 136 AHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVR 195
           AH+GKQPIARWYFPPEVDYRL ALPP+AKGLVVWIIEAKVLSK+ELQFLALLPTLRPKVR
Sbjct: 147 AHVGKQPIARWYFPPEVDYRLEALPPDAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVR 206

Query: 196 VIAECGNWRKFMWKPLKEIAG 215
           VIAECGNWRKFMWKPLKEIAG
Sbjct: 207 VIAECGNWRKFMWKPLKEIAG 213

[Close]

BLAST of Cucsa.118810 vs. TrEMBL
Match: B9T3W1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0261230 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 6.5e-86
Identity = 152/163 (93.25%), Postives = 158/163 (96.93%), Query Frame = 1


Query: 52  VRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFL 111
           VRC GIGIGDFIGGDL+KFDL QWLSDVEEHKALAIY+PHEGGYEGRY  RLRYQGYYFL
Sbjct: 56  VRCSGIGIGDFIGGDLVKFDLEQWLSDVEEHKALAIYTPHEGGYEGRYFTRLRYQGYYFL 115

Query: 112 DLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEA 171
           DL+ARGLGDPETTLTKIHPVCPAH+GKQPIARWYFPPEVDYRLAALPP+AKGLVVWIIEA
Sbjct: 116 DLTARGLGDPETTLTKIHPVCPAHVGKQPIARWYFPPEVDYRLAALPPDAKGLVVWIIEA 175

Query: 172 KVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 215
           KVLSKAELQFLALLP+LRPKVRVIAECGNWRK MWKPLKEIAG
Sbjct: 176 KVLSKAELQFLALLPSLRPKVRVIAECGNWRKVMWKPLKEIAG 218

[Close]

BLAST of Cucsa.118810 vs. TrEMBL
Match: A9PJX9_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 8.5e-86
Identity = 154/179 (86.03%), Postives = 162/179 (90.50%), Query Frame = 1


Query: 36  NNRRSSLRPGNGRAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGY 95
           NN  S  RP  G    V+C GIG+GDFIGGDL+KFD+GQWLSDVEEHKALAIY PHEGGY
Sbjct: 49  NNNVSKRRPTAG--LVVKCSGIGLGDFIGGDLVKFDIGQWLSDVEEHKALAIYPPHEGGY 108

Query: 96  EGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLA 155
           EGRYLNRL  QGYYFLDLSARGLGDPETTLTK+HPVCPAHLGKQPIARWYFPPEVD+RL 
Sbjct: 109 EGRYLNRLIRQGYYFLDLSARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDFRLE 168

Query: 156 ALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 215
            LPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRP VRV+AECGNWRKF+WKPLKEIAG
Sbjct: 169 HLPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVVAECGNWRKFVWKPLKEIAG 225

[Close]

BLAST of Cucsa.118810 vs. TAIR10
Match: AT5G58260.1 (AT5G58260.1 oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor)

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-79
Identity = 142/201 (70.65%), Postives = 165/201 (82.09%), Query Frame = 1


Query: 13  LAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIGDFIGGDLLKFDL 72
           +APP  F +S+   + +     +N R         R+  V+C  I   D+IGGDL+K D+
Sbjct: 11  VAPPC-FEASQVKKIKTVGSFLVNTRSK-----RRRSTGVKCSSIA--DYIGGDLVKPDI 70

Query: 73  GQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVC 132
           GQWL DVEEHKA+AIY+PHEGGYEGRYLNRL+ QGYYFLD+SARGLGDPETTL K +PVC
Sbjct: 71  GQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGDPETTLLKNYPVC 130

Query: 133 PAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKV 192
           PAHLGKQPIARWY+PPEVDYRLAALPP+AKGLVVW++EAKVLSK+ELQFLALLP+LRP V
Sbjct: 131 PAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKVLSKSELQFLALLPSLRPNV 190

Query: 193 RVIAECGNWRKFMWKPLKEIA 214
           RVIAECGNWRKF+WKPL EIA
Sbjct: 191 RVIAECGNWRKFVWKPLAEIA 203

[Close]

BLAST of Cucsa.118810 vs. NCBI nr
Match: gi|449444324|ref|XP_004139925.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-123
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60
           MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG
Sbjct: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 215

[Close]

BLAST of Cucsa.118810 vs. NCBI nr
Match: gi|659112526|ref|XP_008456262.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, organellar chromatophore [Cucumis melo])

HSP 1 Score: 444.9 bits (1143), Expect = 8.1e-122
Identity = 211/215 (98.14%), Postives = 213/215 (99.07%), Query Frame = 1


Query: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60
           MAP+ASMFNGAPLAPPLH HSSRHHPLTSPAM+PINNRRSS RPGNGRAATVRCEGIGIG
Sbjct: 1   MAPVASMFNGAPLAPPLHLHSSRHHPLTSPAMVPINNRRSSFRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 215

[Close]

BLAST of Cucsa.118810 vs. NCBI nr
Match: gi|802540680|ref|XP_012077760.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas])

HSP 1 Score: 337.4 bits (864), Expect = 1.8e-89
Identity = 166/205 (80.98%), Postives = 176/205 (85.85%), Query Frame = 1


Query: 10  GAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIGDFIGGDLLK 69
           G+P    LH  ++R   +    MLP      + R   G    V+C GIGI DFIGGDLLK
Sbjct: 11  GSPSFVNLHNPTTRIAGIKRNIMLPTGGEAWTTRGRTG-IRVVKCSGIGIEDFIGGDLLK 70

Query: 70  FDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIH 129
           FDLG+WLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIH
Sbjct: 71  FDLGRWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIH 130

Query: 130 PVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLR 189
           PVCPAHLGKQPIARWYFPPEVDYRLAALPP+AKGLVVWIIEAKVLSKAELQFLALLP+LR
Sbjct: 131 PVCPAHLGKQPIARWYFPPEVDYRLAALPPDAKGLVVWIIEAKVLSKAELQFLALLPSLR 190

Query: 190 PKVRVIAECGNWRKFMWKPLKEIAG 215
           PKVRVIAECGNWRKF+WKPLKEIAG
Sbjct: 191 PKVRVIAECGNWRKFVWKPLKEIAG 214

[Close]

BLAST of Cucsa.118810 vs. NCBI nr
Match: gi|1009169951|ref|XP_015865942.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 335.9 bits (860), Expect = 5.3e-89
Identity = 172/225 (76.44%), Postives = 181/225 (80.44%), Query Frame = 1


Query: 1   MAPLASMF-NGAP-LAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNG---------RA 60
           MA   S F +G P LA P   H   H+ + +  M  +  R   L    G         R 
Sbjct: 1   MAATTSCFKHGIPVLASPQQNHPPSHNCMVNVKM--VGKRDMMLMGARGGYENGKISKRF 60

Query: 61  ATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYY 120
             VRC GIGIGDFIGGDLL+ DLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYY
Sbjct: 61  GMVRCSGIGIGDFIGGDLLRPDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYY 120

Query: 121 FLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWII 180
           FLDL+ARGLGDPETTLTKIHPVCPAH+GKQPIARWYFPPEVDYRL ALPPNAKGLVVWII
Sbjct: 121 FLDLTARGLGDPETTLTKIHPVCPAHVGKQPIARWYFPPEVDYRLDALPPNAKGLVVWII 180

Query: 181 EAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 215
           EAKVLSK+ELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 EAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 223

[Close]

BLAST of Cucsa.118810 vs. NCBI nr
Match: gi|590591783|ref|XP_007017113.1| (NAD(P)H-quinone oxidoreductase subunit N [Theobroma cacao])

HSP 1 Score: 331.6 bits (849), Expect = 1.0e-87
Identity = 162/201 (80.60%), Postives = 173/201 (86.07%), Query Frame = 1


Query: 16  PLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCE--GIGIGDFIGGDLLKFDLG 75
           P+ F +++ H  TS +              N R   V+C   GIGIGDFIGGDLL+FDLG
Sbjct: 27  PMPFRATQGHSKTSKS--------------NRRGLMVKCSGSGIGIGDFIGGDLLRFDLG 86

Query: 76  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 135
           +WLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP
Sbjct: 87  RWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGDPETTLTKIHPVCP 146

Query: 136 AHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPKVR 195
           AH+GKQPIARWYFPPEVDYRL ALPP+AKGLVVWIIEAKVLSK+ELQFLALLPTLRPKVR
Sbjct: 147 AHVGKQPIARWYFPPEVDYRLEALPPDAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVR 206

Query: 196 VIAECGNWRKFMWKPLKEIAG 215
           VIAECGNWRKFMWKPLKEIAG
Sbjct: 207 VIAECGNWRKFMWKPLKEIAG 213

The following BLAST results are available for this feature:

BLAST of Cucsa.118810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHN_ARATH	1.9e-78	70.65	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana ...	[more]
NDHN_CYAP4	6.3e-34	48.32	NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / AT...	[more]
NDHN_CYAP8	2.7e-32	48.23	NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 8801) GN=...	[more]
NDHN_SYNE7	1.7e-31	49.66	NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC ...	[more]
NDHN_SYNP6	1.7e-31	49.66	NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144...	[more]

BLAST of Cucsa.118810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEC3_CUCSA	7.8e-124	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133810 PE=4 SV=1	[more]
A0A067LEK8_JATCU	1.3e-89	80.98	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17275 PE=4 SV=1	[more]
A0A061GZ91_THECC	6.9e-88	80.60	NAD(P)H-quinone oxidoreductase subunit N OS=Theobroma cacao GN=TCM_042316 PE=4 S...	[more]
B9T3W1_RICCO	6.5e-86	93.25	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0261230 PE=4 SV=1	[more]
A9PJX9_9ROSI	8.5e-86	86.03	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of Cucsa.118810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58260.1	1.1e-79	70.65	oxidoreductases, acting on NADH or NADPH, quinone or similar compoun...	[more]

BLAST of Cucsa.118810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444324\|ref\|XP_004139925.1\|	1.1e-123	100.00	PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis sati...	[more]
gi\|659112526\|ref\|XP_008456262.1\|	8.1e-122	98.14	PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, organellar chromatophore [C...	[more]
gi\|802540680\|ref\|XP_012077760.1\|	1.8e-89	80.98	PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha cur...	[more]
gi\|1009169951\|ref\|XP_015865942.1\|	5.3e-89	76.44	PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic-like [Ziziphu...	[more]
gi\|590591783\|ref\|XP_007017113.1\|	1.0e-87	80.60	NAD(P)H-quinone oxidoreductase subunit N [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020874	NAD(P)H-quinone_OxRdtase_su_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009817	defense response to fungus, incompatible interaction
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0016020	membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.118810.1	Cucsa.118810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020874	NAD(P)H-quinone oxidoreductase, subunit N	PFAM	PF11909	NdhN	coord: 74..211 score: 5.0
None	No IPR available	PANTHER	PTHR35515	FAMILY NOT NAMED	coord: 38..214 score: 1.3E
None	No IPR available	PANTHER	PTHR35515:SF1	NADH DEHYDROGENASE-LIKE COMPLEX N	coord: 38..214 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.118810	Cla013428	Watermelon (97103) v1	cgywmB182
Cucsa.118810	Csa6G133810	Cucumber (Chinese Long) v2	cgycuB155
Cucsa.118810	MELO3C019595	Melon (DHL92) v3.5.1	cgymeB180
Cucsa.118810	ClCG02G018940	Watermelon (Charleston Gray)	cgywcgB179
Cucsa.118810	CSPI06G10800	Wild cucumber (PI 183967)	cgycpiB156
Cucsa.118810	CmaCh02G006850	Cucurbita maxima (Rimu)	cgycmaB0310
Cucsa.118810	CmoCh02G006850	Cucurbita moschata (Rifu)	cgycmoB0302
Cucsa.118810	Lsi10G014920	Bottle gourd (USVL1VR-Ls)	cgylsiB176
Cucsa.118810	Cp4.1LG05g10080	Cucurbita pepo (Zucchini)	cgycpeB0303
Cucsa.118810	MELO3C019595.2	Melon (DHL92) v3.6.1	cgymedB173
Cucsa.118810	CsaV3_6G013250	Cucumber (Chinese Long) v3	cgycucB159
Cucsa.118810	Cla97C02G044870	Watermelon (97103) v2	cgywmbB174
Cucsa.118810	Bhi10G000705	Wax gourd	cgywgoB213
Cucsa.118810	Carg11747	Silver-seed gourd	carcgyB1172

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.118810	Cucurbita maxima (Rimu)	cgycmaB0299
Cucsa.118810	Cucurbita maxima (Rimu)	cgycmaB0304
Cucsa.118810	Cucurbita moschata (Rifu)	cgycmoB0296
Cucsa.118810	Wild cucumber (PI 183967)	cgycpiB158
Cucsa.118810	Cucumber (Chinese Long) v2	cgycuB157
Cucsa.118810	Melon (DHL92) v3.5.1	cgymeB182
Cucsa.118810	Cucurbita pepo (Zucchini)	cgycpeB0290
Cucsa.118810	Silver-seed gourd	carcgyB0391
Cucsa.118810	Silver-seed gourd	carcgyB1171