Cucsa.113680 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.113680
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent Clp protease adapter protein ClpS
Locationscaffold00953 : 1778724 .. 1781461 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTCTTCAAGCACGCTGAGAGAAGAGGGCGACAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACTTCAACCAAGCCAGGTATTCAAATTCTTTCCTATTTCCTCCTCTTAACTCTTAATTTGTCTCTACTTCTTTTGGGTGTGTATGCTATGTTCTTAATCCAAATTCAGATGAAGGACTTTGAGAAATTTTGGTTTTGTTGATGAATCTTTGCATAATTCCTGGGTTTGTGGAGATTGAAGCTTTTGGCTCCTTAGAATGAGTATAATTAATATTATTTACCGGGAAAATCTGTGTGTAGAATATTATTTTCCTGTTTGTATGAATTTTGTTTTTGTCGTAGAGGAGAGAATAGAGTGTTGCATTATGAGGGGAGAACTACAAATGGGGCCTAATTGGTGTTTAGAAGAAGATCTGAAGCTTTTTGTTTGTTTGTGTCTGTATTTACGCTGCAGTAGTTTAAAGCTTTCGTGGTTGTTTAGTAAAATATTGTTTGTGGTGGGTGGAAGTATTGATATATTTAAATATATTGTAATTCAAACATGTCAGGAGGTGGTATTTTCAAATCCTGTAGTGTCATTTTTACCAGATAATGTGAAGCTGCGATAAAAGGAGCTCCTTATCTGTATTTAAGATTGTGAGGTTCCTTGGCATGTTTCCTCAAAATAATGCCACTTTTGGTTCTCCATTTTTTAACCAAATATTTGTTTGGGCTTTATGGGATATGTTAACATATTAGGTAATATGAAGTTTCGTCTTAAAACCAATAGGTAATGAGAGGTTAGAGGAGTAGCTCATCTATATTGTTAAGATTATGAGATGGTCGATCTTCTAATATGCTAGTTTCAATATCTGAGGTCTTTTAATTTCTCTGCTATGGGGATCATCGACACTTTTATCTCCAATGTTGCATTTTGAGAGATAAAACACTAAAAGGTAAATTATGATAAAGCTTTTCAATTGGAACTTTGAGTAGAAAGACTGCCGTCTTTAAAAAACTATTTACTTTTTGCATCAATATAAAGTTGGCAACAAAATTAATCATAAAAAATTATCAACATTTGAAGAAGGGTAACATTCTCCCATTTCGTTCACACCAAAGGTTAAAAAATCATCCCTGTTGACAGCAAGCTATAATGATATCTTCACACCATGGTAAGGATGACCCAAAAAAAaTGGAGGCAAGAATGTCATATATGTTGCTAGACATAATCATTGACCAACCAAAAGCATCCAATATCAAGAGGCAAAAGAGAAACCTAGTAAAAAGATGGCATAGATGTTAAGGAAACACACCAAAAAGCAGAGTGACAAACGTGGAGCGTTCTCTTTTGAAGGTCATCAGTAGCTCCCACAAAAAGATTTAAATTTCCTTCAGATAAGCTTCCTTCCAAATCAACAAAAAAGTTTTTTCGGAGATGAGTCCTTAGCTTGGATAGAATCCTTTGTTAATAAACGTACATGAAAGCTTTAGAGGGATTAAGAGGTCAAATCCACGAATTGTTGAAATTCCTCTTACTCTTTGGCTTGTCCTGGGGGCAAAGAGTTGGGATGTTTGGTGATATTCACCGAAGTATTGCTTCAAGTCTGCAGGCAAAGAATTTAATATTAATCCAGCCCATGTTGCATCTAAGACCTAGAAAAGTAAAATACATTAAATGATTATTTAAATTCAATTGATTAAGACATATACTCTTGGCTTAGAGGTTAAAGGGTCAAAGGCTCGACCCTTCTCATTGTTGACTAGTTTGTGAATCATGCAAATGGATAACCATAAAAGAGGTTCATTGTTAGAACTAAATTTGCAAAGATCTTAGATCCTATTTATATACTCTTCAAAACACCTTTCAATTTGTAATTTGAGATAAATATCAATGGCCTATTCTAAACGTTAATATTCATAATTATGGTACGTAGTTTTACCTGCAAAATTGTGAAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATTTTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGgTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCGGGCCGTGAATCTGAGTTTGATGTTAGGTACAAAACACTTTTCCTTTTAATGTTTGTCACGTATAAGCAACTAAAGATCTCTATGCATTAGAGAAGGTCTCAACTTCCAAAATTATTTTGATCTTCAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGAATAAGAAACATAGATTGTGTAATGTACTCTTTTTCCTCCCTTAGTTATCAGCCATATTAAAATTGCATGTTCTCAACTGCTACATTGTTGCAAGTTGCGCCTATGTACATAAATAGAGATACTTCATAAACAAACAATCTTCAATTGATGAATATAATTATCACTCTAGTTATGATA

mRNA sequence

AGTTCTTCAAGCACGCTGAGAGAAGAGGGCGACAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACTTCAACCAAGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCGGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGAATAAGAAACATAGATTGTGTAATGTACTCTTTTTCCTCCCTTAGTTATCAGCCATATTAAAATTGCATGTTCTCAACTGCTACATTGTTGCAAGTTGCGCCTATGTACATAAATAGAGATACTTCATAAACAAACAATCTTCAATTGATGAATATAATTATCACTCTAGTTATGATA

Coding sequence (CDS)

ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACTTCAACCAAGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGgTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCGGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGA

Protein sequence

MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC*
Homology
[Close]
BLAST of Cucsa.113680 vs. Swiss-Prot
Match: CLPS1_ARATH (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 9.0e-62
Identity = 119/160 (74.38%), Postives = 134/160 (83.75%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHK-QCRNRSALMMISV-AELGKGGGLLEKPTI 60
           ME AICGR+ L+P+  F S K GDK+   K  C NRS LM +S  A LGKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K +PPYRV+LHNDNFNKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]
BLAST of Cucsa.113680 vs. Swiss-Prot
Match: CLPS_SYNE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942) GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 

Query: 75  RKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 134
           RK +P YRVLLHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]
BLAST of Cucsa.113680 vs. Swiss-Prot
Match: CLPS_SYNP6 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpS PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.8e-16
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 75  RKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 134
           RK +P YRVLLHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]
BLAST of Cucsa.113680 vs. Swiss-Prot
Match: CLPS_SYNS9 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) GN=clpS PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.4e-14
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1 

Query: 54  EKPTIEKTTPGRESEFDV--RKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDN 113
           E PT    +PG  +  D    + RK SP Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 114 AVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]
BLAST of Cucsa.113680 vs. Swiss-Prot
Match: CLPS_GLOVI (ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain PCC 7421) GN=clpS PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 1 

Query: 72  RKS--RKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVII 131
           RKS  RK  P Y+VLLHND+     YV++VLMK IP M    A  IM EAH  G+AVVI+
Sbjct: 8   RKSVQRKPMPLYKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVVIV 67

Query: 132 CAQVDAEDHCMQLRGNGLLSSIEP 154
           CA   AE +   L  + L S+ EP
Sbjct: 68  CALEHAEFYSESLNRHNLTSTYEP 91

[Close]
BLAST of Cucsa.113680 vs. TrEMBL
Match: A0A0A0LSY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]
BLAST of Cucsa.113680 vs. TrEMBL
Match: M5WB18_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012720mg PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.4e-69
Identity = 129/156 (82.69%), Postives = 140/156 (89.74%), Query Frame = 1 

Query: 3   AAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTT 62
           AAICGRV LSPNQ F   K GDK+YFHKQC +RS LM  S   LGKGGGLLEKPTIEKTT
Sbjct: 2   AAICGRVALSPNQGFNLAKSGDKHYFHKQCSSRSILMTASSTRLGKGGGLLEKPTIEKTT 61

Query: 63  PGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN 122
           P R+SEFD+RKSRK SPPYRV+LHNDN+NKREYVVQVLMKVIPGMT+D AVNIMQEAH+N
Sbjct: 62  PSRDSEFDLRKSRKMSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNIMQEAHHN 121

Query: 123 GMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           G+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPASDGC
Sbjct: 122 GLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPASDGC 157

[Close]
BLAST of Cucsa.113680 vs. TrEMBL
Match: W9RDX7_9ROSA (ATP-dependent Clp protease adapter protein ClpS OS=Morus notabilis GN=L484_004282 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 8.5e-67
Identity = 129/158 (81.65%), Postives = 136/158 (86.08%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           M  AI GRVPLSPN  F   K GD+ YFHKQC  R+ LM +S   LGKGGGLLEKPTIEK
Sbjct: 1   MATAIRGRVPLSPNHAFNPPKSGDRSYFHKQCSIRNFLMTLSTTALGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           T PGR+SEFD R+SRK SPPY VLLHNDNFNKREYVVQVLMKVIP MTLDNAVNIMQEAH
Sbjct: 61  TKPGRKSEFDKRRSRKMSPPYCVLLHNDNFNKREYVVQVLMKVIPEMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAE+HCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEEHCMQLRGNGLLSSIEPASDGC 158

[Close]
BLAST of Cucsa.113680 vs. TrEMBL
Match: D7SIW4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04020 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.2e-66
Identity = 128/158 (81.01%), Postives = 139/158 (87.97%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           ME AICGRVPLSPN FFTS K GDK+   KQ  +R+ LM +S A  GKG G+LE+PTIE+
Sbjct: 1   METAICGRVPLSPNHFFTS-KSGDKHSLSKQWTHRTMLMTVSAAAPGKGSGVLERPTIER 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
             PGRESEFD+RKSRK SPPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  IMPGRESEFDLRKSRKMSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           +NGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPAS GC
Sbjct: 121 HNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASGGC 157

[Close]
BLAST of Cucsa.113680 vs. TrEMBL
Match: A0A059A4N4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K02665 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.2e-66
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           ME AICGRV LSP+  F+  K GDK+YF+KQC  RS+L  +S   LGKGGGLLE+PTIE 
Sbjct: 74  METAICGRVALSPHHVFS--KSGDKHYFNKQCSYRSSLTTMSTTALGKGGGLLERPTIE- 133

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRV+LHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 134 TTPGRESEFDVRKSRKTAPPYRVMLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 193

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNG++VVIIC Q DAE+HCMQLRGNGLLSSIEPAS GC
Sbjct: 194 YNGLSVVIICTQADAEEHCMQLRGNGLLSSIEPASGGC 228

[Close]
BLAST of Cucsa.113680 vs. TAIR10
Match: AT1G68660.1 (AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 237.7 bits (605), Expect = 5.1e-63
Identity = 119/160 (74.38%), Postives = 134/160 (83.75%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHK-QCRNRSALMMISV-AELGKGGGLLEKPTI 60
           ME AICGR+ L+P+  F S K GDK+   K  C NRS LM +S  A LGKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K +PPYRV+LHNDNFNKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]
BLAST of Cucsa.113680 vs. NCBI nr
Match: gi|659066701|ref|XP_008456997.1| (PREDICTED: uncharacterized protein LOC103496767 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 9.0e-86
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]
BLAST of Cucsa.113680 vs. NCBI nr
Match: gi|449439385|ref|XP_004137466.1| (PREDICTED: uncharacterized protein LOC101211403 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 3.4e-85
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 1 

Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]
BLAST of Cucsa.113680 vs. NCBI nr
Match: gi|595849445|ref|XP_007209725.1| (hypothetical protein PRUPE_ppa012720mg [Prunus persica])

HSP 1 Score: 269.6 bits (688), Expect = 3.4e-69
Identity = 129/156 (82.69%), Postives = 140/156 (89.74%), Query Frame = 1 

Query: 3   AAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTT 62
           AAICGRV LSPNQ F   K GDK+YFHKQC +RS LM  S   LGKGGGLLEKPTIEKTT
Sbjct: 2   AAICGRVALSPNQGFNLAKSGDKHYFHKQCSSRSILMTASSTRLGKGGGLLEKPTIEKTT 61

Query: 63  PGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN 122
           P R+SEFD+RKSRK SPPYRV+LHNDN+NKREYVVQVLMKVIPGMT+D AVNIMQEAH+N
Sbjct: 62  PSRDSEFDLRKSRKMSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNIMQEAHHN 121

Query: 123 GMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           G+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPASDGC
Sbjct: 122 GLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPASDGC 157

[Close]
BLAST of Cucsa.113680 vs. NCBI nr
Match: gi|658032738|ref|XP_008351876.1| (PREDICTED: uncharacterized protein LOC103415312 [Malus domestica])

HSP 1 Score: 265.8 bits (678), Expect = 4.9e-68
Identity = 126/156 (80.77%), Postives = 139/156 (89.10%), Query Frame = 1 

Query: 3   AAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTT 62
           AAICGRVPLSPN  F   K GDK+YFH+Q  NRS LM  S   LG GGG+L+KPTIEKTT
Sbjct: 2   AAICGRVPLSPNHGFNLNKSGDKHYFHRQSPNRSILMTASSTRLGTGGGVLDKPTIEKTT 61

Query: 63  PGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYN 122
           PGR+SEFDVRKSRK SPPYRV+LHNDN+NKREYVVQVLMKVIPGMT+D AVN+MQEAH+N
Sbjct: 62  PGRDSEFDVRKSRKMSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNVMQEAHHN 121

Query: 123 GMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           G+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPASDGC
Sbjct: 122 GLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPASDGC 157

[Close]
BLAST of Cucsa.113680 vs. NCBI nr
Match: gi|470126519|ref|XP_004299231.1| (PREDICTED: uncharacterized protein LOC101291144 [Fragaria vesca subsp. vesca])

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67
Identity = 126/157 (80.25%), Postives = 140/157 (89.17%), Query Frame = 1 

Query: 3   AAICGRVPLSPNQFFTSTKPG-DKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKT 62
           AA+CGRVPLSP Q F  +K G DK YFHKQC NRS +M  +   LGKGGGLLEKPTIEKT
Sbjct: 2   AALCGRVPLSPTQVFNLSKSGGDKPYFHKQCPNRSTVMTATTTVLGKGGGLLEKPTIEKT 61

Query: 63  TPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHY 122
           TPGR+SEFD+RKS+K SPPYRV+LHNDNFNKREYVVQVLMKVIPGMT+D AVN+MQEAH+
Sbjct: 62  TPGRDSEFDLRKSKKMSPPYRVMLHNDNFNKREYVVQVLMKVIPGMTVDIAVNVMQEAHH 121

Query: 123 NGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           NG+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPA DGC
Sbjct: 122 NGLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPAGDGC 158

The following BLAST results are available for this feature:
BLAST of Cucsa.113680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLPS1_ARATH9.0e-6274.38ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t... [more]
CLPS_SYNE72.7e-1858.23ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra... [more]
CLPS_SYNP69.8e-1656.16ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC... [more]
CLPS_SYNS95.4e-1443.14ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9... [more]
CLPS_GLOVI1.7e-1250.00ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain... [more]
BLAST of Cucsa.113680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSY6_CUCSA2.4e-8599.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042210 PE=3 SV=1[more]
M5WB18_PRUPE2.4e-6982.69Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012720mg PE=4 SV=1[more]
W9RDX7_9ROSA8.5e-6781.65ATP-dependent Clp protease adapter protein ClpS OS=Morus notabilis GN=L484_00428... [more]
D7SIW4_VITVI4.2e-6681.01Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04020 PE=4 SV=... [more]
A0A059A4N4_EUCGR4.2e-6681.01Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K02665 PE=4 ... [more]
BLAST of Cucsa.113680 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68660.15.1e-6374.38 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of Cucsa.113680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066701|ref|XP_008456997.1|9.0e-86100.00PREDICTED: uncharacterized protein LOC103496767 [Cucumis melo][more]
gi|449439385|ref|XP_004137466.1|3.4e-8599.37PREDICTED: uncharacterized protein LOC101211403 [Cucumis sativus][more]
gi|595849445|ref|XP_007209725.1|3.4e-6982.69hypothetical protein PRUPE_ppa012720mg [Prunus persica][more]
gi|658032738|ref|XP_008351876.1|4.9e-6880.77PREDICTED: uncharacterized protein LOC103415312 [Malus domestica][more]
gi|470126519|ref|XP_004299231.1|1.4e-6780.25PREDICTED: uncharacterized protein LOC101291144 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003769ClpS_core
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR022935ClpS
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030163 protein catabolic process
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.113680.1Cucsa.113680.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003769Adaptor protein ClpS, corePFAMPF02617ClpScoord: 77..144
score: 2.0
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 58..154
score: 1.4
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 75..152
score: 1.15
IPR022935ATP-dependent Clp protease adaptor protein ClpSHAMAPMF_00302ClpScoord: 61..155
score: 14
NoneNo IPR availablePANTHERPTHR33473FAMILY NOT NAMEDcoord: 1..158
score: 4.8E
NoneNo IPR availablePANTHERPTHR33473:SF2SUBFAMILY NOT NAMEDcoord: 1..158
score: 4.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.113680Cla018514Watermelon (97103) v1cgywmB163
Cucsa.113680Csa1G042210Cucumber (Chinese Long) v2cgycuB137
Cucsa.113680MELO3C002078Melon (DHL92) v3.5.1cgymeB156
Cucsa.113680ClCG04G011240Watermelon (Charleston Gray)cgywcgB160
Cucsa.113680CSPI01G06660Wild cucumber (PI 183967)cgycpiB137
Cucsa.113680CmaCh13G010360Cucurbita maxima (Rimu)cgycmaB0264
Cucsa.113680CmaCh18G000340Cucurbita maxima (Rimu)cgycmaB0268
Cucsa.113680CmoCh18G000300Cucurbita moschata (Rifu)cgycmoB0264
Cucsa.113680CmoCh13G010760Cucurbita moschata (Rifu)cgycmoB0262
Cucsa.113680CmoCh18G010530Cucurbita moschata (Rifu)cgycmoB0265
Cucsa.113680Lsi02G001670Bottle gourd (USVL1VR-Ls)cgylsiB148
Cucsa.113680Cp4.1LG09g02800Cucurbita pepo (Zucchini)cgycpeB0248
Cucsa.113680Cp4.1LG20g01120Cucurbita pepo (Zucchini)cgycpeB0257
Cucsa.113680MELO3C012223.2Melon (DHL92) v3.6.1cgymedB153
Cucsa.113680MELO3C002078.2Melon (DHL92) v3.6.1cgymedB156
Cucsa.113680CsaV3_1G006510Cucumber (Chinese Long) v3cgycucB143
Cucsa.113680Cla97C04G078110Watermelon (97103) v2cgywmbB156
Cucsa.113680Cla97C05G104830Watermelon (97103) v2cgywmbB158
Cucsa.113680Bhi08G001010Wax gourdcgywgoB179
Cucsa.113680Carg04804Silver-seed gourdcarcgyB0448
Cucsa.113680Carg22758Silver-seed gourdcarcgyB0588
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.113680Cucsa.283810Cucumber (Gy14) v1cgycgyB064
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.113680Cucurbita maxima (Rimu)cgycmaB0260
Cucsa.113680Melon (DHL92) v3.5.1cgymeB161
Cucsa.113680Watermelon (Charleston Gray)cgywcgB166
Cucsa.113680Watermelon (97103) v1cgywmB168
Cucsa.113680Cucurbita pepo (Zucchini)cgycpeB0251
Cucsa.113680Cucurbita pepo (Zucchini)cgycpeB0265
Cucsa.113680Bottle gourd (USVL1VR-Ls)cgylsiB157
Cucsa.113680Melon (DHL92) v3.6.1cgymedB160
Cucsa.113680Silver-seed gourdcarcgyB0669
Cucsa.113680Watermelon (97103) v2cgywmbB161