CmoCh18G000300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G000300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ATP-dependent Clp protease adapter protein ClpS
Location	Cmo_Chr18 : 128803 .. 130461 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGGTGGGCTCGTCTAGCGAACAGGAAACCCACGCGTCAGTAACTAAACCACTCAGTCCAAGCTCGTTTACATTTTTCTGTAAATCTGCGCCTCCAAATCACTCTTCATCCTGCAACAGTTCTTCAAGCAGAGCGACAGAGATTGAGAGTGGGCGAGAGTGGCCATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGGTATTCACACTTCTACCAATTTGCTCCTCTTAAGTTGTCTATCTCGTTAATCCAAATCTAGATGAAATGTTTTTTTAGAAATTTTTGTTCGTTGTTCAATATTTACCTCATTTCTGGCTTTGTGGACACAGAATCCGCTTATCATGCGCATGTAAGAATGATAATTTTCCAGTTCGTTTGAATTTTATTTTTTCCAAGAGGAAAACCAAGCGTTTGATTATGGGGGAAAACTACAAATTGAAGCAAATCGTGCAGAGAAAATCTGAATCTTCTTGTTTGCATGTCTGTGTGCATCTATGGTGCAGTAGTATAATGCTACTCTTGATTGTTCAGTAAAATCTTGTATATGTGACAACAGCATTCACACAACTCTTGTGTCATGGTGGATTAAAATTTCTAAATATAGGGATCAACATGAGATTAGCGAGAAAGCTCAATGACTAAGTAGAAGTTTTAGAAGTTGAATGATCAAAATGAATAGGAAATGTTATTGTTTAGCTACCAAAATAATAGTTTAATCTTCTAGTTCTCTTTCTTTTACTTCAATCTATATTATTGCTGAAAGTCCATAGACAAAAGTATATGAAGTTCAGAATTCCAGAAATTTTAGAACTTGAACTTGCATGAGATGTTTATTGAGTATTAGACATTTATAATTGGTATTTGTGTGATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGTATAAAACAATTCTCCTCCTCTGAATGTCTGTCGCGTATGAGCAAGTAAAGATCTGTATGCATTTGAGAACTCGAGCTGAGCTTCCAATACAATTTTGATGTTCAGGAAATCAAGGAAAATAGCGCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGATGGTTGTTGAATAGGGAGAAGAGATTATGTAATGTACTCTCTTCTGCCCATATTAAAATATTGAATGTCATCAACTGCTACAAAATTATGTACATAAATAGAGATACTTCATAAAGAAATAAACTTCAATTTACGAATGCATGCTCATTCACTCCGGTTTCACTATTCTGTTAGTAGTACGCAGTTTTTAAATGAATATGTGCTGTTTTCCTCCTCACCCACCCCATATCCCATACATACATTAA

mRNA sequence

GGAGGGTGGGCTCGTCTAGCGAACAGGAAACCCACGCGTCAGTAACTAAACCACTCAGTCCAAGCTCGTTTACATTTTTCTGTAAATCTGCGCCTCCAAATCACTCTTCATCCTGCAACAGTTCTTCAAGCAGAGCGACAGAGATTGAGAGTGGGCGAGAGTGGCCATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGAAATCAAGGAAAATAGCGCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGATGGTTGTTGAATAGGGAGAAGAGATTATGTAATGTACTCTCTTCTGCCCATATTAAAATATTGAATGTCATCAACTGCTACAAAATTATGTACATAAATAGAGATACTTCATAAAGAAATAAACTTCAATTTACGAATGCATGCTCATTCACTCCGGTTTCACTATTCTGTTAGTAGTACGCAGTTTTTAAATGAATATGTGCTGTTTTCCTCCTCACCCACCCCATATCCCATACATACATTAA

Coding sequence (CDS)

ATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGAAATCAAGGAAAATAGCGCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGATGGTTGTTGA

Homology

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BLAST of CmoCh18G000300 vs. Swiss-Prot
Match: CLPS1_ARATH (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-61
Identity = 121/160 (75.62%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPAT 60
           ME AICGRL L+P   FNS + GDK+   K  C NRSIL  LS  A LGKGGG+L+KP  
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQE 120
           EKTTPGRESEF++RKS+KIAPPYRV+LHNDN NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

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BLAST of CmoCh18G000300 vs. Swiss-Prot
Match: CLPS_SYNE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942) GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-18
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1


Query: 75  RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVD 134
           RKIAP YRVLLHND+ N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of CmoCh18G000300 vs. Swiss-Prot
Match: CLPS_SYNP6 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 75  RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVD 134
           RKIAP YRVLLHND+ N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

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BLAST of CmoCh18G000300 vs. Swiss-Prot
Match: CLPS_GLOVI (ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain PCC 7421) GN=clpS PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-13
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 72  RKS--RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVII 131
           RKS  RK  P Y+VLLHND+H    YV++VLMK IP M    A  IM EAH  G+AVVI+
Sbjct: 8   RKSVQRKPMPLYKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVVIV 67

Query: 132 CAQVDAEDHCMQLRGNGLLSSIEP 154
           CA   AE +   L  + L S+ EP
Sbjct: 68  CALEHAEFYSESLNRHNLTSTYEP 91

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BLAST of CmoCh18G000300 vs. Swiss-Prot
Match: CLPS_SYNS9 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) GN=clpS PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-13
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 75  RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVD 134
           RK +P Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VI+C    
Sbjct: 24  RKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDIEP 83

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C  L+  GL SSIEP
Sbjct: 84  AEFYCETLKSKGLTSSIEP 102

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BLAST of CmoCh18G000300 vs. TrEMBL
Match: A0A0A0LSY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.1e-78
Identity = 144/158 (91.14%), Postives = 150/158 (94.94%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP  FF ST+PGDKYYFHKQCRNRS L M+SVAELGKGGGLLEKPA EK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of CmoCh18G000300 vs. TrEMBL
Match: M5WB18_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012720mg PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.2e-66
Identity = 123/156 (78.85%), Postives = 138/156 (88.46%), Query Frame = 1


Query: 3   AAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTT 62
           AAICGR+ LSP   FN  + GDK+YFHKQC +RSIL   S   LGKGGGLLEKP  EKTT
Sbjct: 2   AAICGRVALSPNQGFNLAKSGDKHYFHKQCSSRSILMTASSTRLGKGGGLLEKPTIEKTT 61

Query: 63  PGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYN 122
           P R+SEF++RKSRK++PPYRV+LHNDN+NKREYVVQVLMKVIPGMTVD AVNIMQEAH+N
Sbjct: 62  PSRDSEFDLRKSRKMSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNIMQEAHHN 121

Query: 123 GMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           G+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPASDGC
Sbjct: 122 GLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPASDGC 157

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BLAST of CmoCh18G000300 vs. TrEMBL
Match: A0A059A4N4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K02665 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.7e-64
Identity = 123/158 (77.85%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           ME AICGR+ LSP+H F+ +  GDK+YF+KQC  RS LT +S   LGKGGGLLE+P  E 
Sbjct: 74  METAICGRVALSPHHVFSKS--GDKHYFNKQCSYRSSLTTMSTTALGKGGGLLERPTIE- 133

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRV+LHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 134 TTPGRESEFDVRKSRKTAPPYRVMLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 193

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNG++VVIIC Q DAE+HCMQLRGNGLLSSIEPAS GC
Sbjct: 194 YNGLSVVIICTQADAEEHCMQLRGNGLLSSIEPASGGC 228

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BLAST of CmoCh18G000300 vs. TrEMBL
Match: W9RDX7_9ROSA (ATP-dependent Clp protease adapter protein ClpS OS=Morus notabilis GN=L484_004282 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.7e-64
Identity = 122/158 (77.22%), Postives = 134/158 (84.81%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           M  AI GR+PLSP H FN  + GD+ YFHKQC  R+ L  LS   LGKGGGLLEKP  EK
Sbjct: 1   MATAIRGRVPLSPNHAFNPPKSGDRSYFHKQCSIRNFLMTLSTTALGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           T PGR+SEF+ R+SRK++PPY VLLHNDN NKREYVVQVLMKVIP MT+DNAVNIMQEAH
Sbjct: 61  TKPGRKSEFDKRRSRKMSPPYCVLLHNDNFNKREYVVQVLMKVIPEMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAE+HCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEEHCMQLRGNGLLSSIEPASDGC 158

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BLAST of CmoCh18G000300 vs. TrEMBL
Match: D7SIW4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04020 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.2e-62
Identity = 119/158 (75.32%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           ME AICGR+PLSP HFF S + GDK+   KQ  +R++L  +S A  GKG G+LE+P  E+
Sbjct: 1   METAICGRVPLSPNHFFTS-KSGDKHSLSKQWTHRTMLMTVSAAAPGKGSGVLERPTIER 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
             PGRESEF++RKSRK++PPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  IMPGRESEFDLRKSRKMSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           +NGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPAS GC
Sbjct: 121 HNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASGGC 157

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BLAST of CmoCh18G000300 vs. TAIR10
Match: AT1G68660.1 (AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 236.9 bits (603), Expect = 8.6e-63
Identity = 121/160 (75.62%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPAT 60
           ME AICGRL L+P   FNS + GDK+   K  C NRSIL  LS  A LGKGGG+L+KP  
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQE 120
           EKTTPGRESEF++RKS+KIAPPYRV+LHNDN NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CmoCh18G000300 vs. NCBI nr
Match: gi|449439385|ref|XP_004137466.1| (PREDICTED: uncharacterized protein LOC101211403 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 3.1e-78
Identity = 144/158 (91.14%), Postives = 150/158 (94.94%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP  FF ST+PGDKYYFHKQCRNRS L M+SVAELGKGGGLLEKPA EK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CmoCh18G000300 vs. NCBI nr
Match: gi|659066701|ref|XP_008456997.1| (PREDICTED: uncharacterized protein LOC103496767 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 8.9e-78
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 1


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP  FF ST+PGDKYYFHKQCRNRS L M+SVAELGKGGGLLEKP  EK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CmoCh18G000300 vs. NCBI nr
Match: gi|658032738|ref|XP_008351876.1| (PREDICTED: uncharacterized protein LOC103415312 [Malus domestica])

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 122/156 (78.21%), Postives = 139/156 (89.10%), Query Frame = 1


Query: 3   AAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTT 62
           AAICGR+PLSP H FN  + GDK+YFH+Q  NRSIL   S   LG GGG+L+KP  EKTT
Sbjct: 2   AAICGRVPLSPNHGFNLNKSGDKHYFHRQSPNRSILMTASSTRLGTGGGVLDKPTIEKTT 61

Query: 63  PGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYN 122
           PGR+SEF+VRKSRK++PPYRV+LHNDN+NKREYVVQVLMKVIPGMTVD AVN+MQEAH+N
Sbjct: 62  PGRDSEFDVRKSRKMSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNVMQEAHHN 121

Query: 123 GMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           G+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPASDGC
Sbjct: 122 GLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPASDGC 157

[Close]

BLAST of CmoCh18G000300 vs. NCBI nr
Match: gi|595849445|ref|XP_007209725.1| (hypothetical protein PRUPE_ppa012720mg [Prunus persica])

HSP 1 Score: 259.2 bits (661), Expect = 4.6e-66
Identity = 123/156 (78.85%), Postives = 138/156 (88.46%), Query Frame = 1


Query: 3   AAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTT 62
           AAICGR+ LSP   FN  + GDK+YFHKQC +RSIL   S   LGKGGGLLEKP  EKTT
Sbjct: 2   AAICGRVALSPNQGFNLAKSGDKHYFHKQCSSRSILMTASSTRLGKGGGLLEKPTIEKTT 61

Query: 63  PGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYN 122
           P R+SEF++RKSRK++PPYRV+LHNDN+NKREYVVQVLMKVIPGMTVD AVNIMQEAH+N
Sbjct: 62  PSRDSEFDLRKSRKMSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNIMQEAHHN 121

Query: 123 GMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           G+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPASDGC
Sbjct: 122 GLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPASDGC 157

[Close]

BLAST of CmoCh18G000300 vs. NCBI nr
Match: gi|657966102|ref|XP_008374733.1| (PREDICTED: uncharacterized protein LOC103437976 [Malus domestica])

HSP 1 Score: 256.1 bits (653), Expect = 3.9e-65
Identity = 120/156 (76.92%), Postives = 138/156 (88.46%), Query Frame = 1


Query: 3   AAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTT 62
           AAICGR+PLS  H FN T+ GDK+YFH+Q  NRSI+   S   LG GGG+L+KP  EKTT
Sbjct: 2   AAICGRVPLSTNHGFNLTKSGDKHYFHRQSPNRSIMMTTSSTRLGTGGGVLDKPTIEKTT 61

Query: 63  PGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYN 122
           P R+SEF+VRKSRK++PPYRV+LHNDN+NKREYVVQVLMKVIPGMTVD AVN+MQEAH+N
Sbjct: 62  PSRDSEFDVRKSRKMSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNVMQEAHHN 121

Query: 123 GMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           G+AVVI+CAQVDAEDHCMQLRGNGLLSS+EPASDGC
Sbjct: 122 GLAVVIVCAQVDAEDHCMQLRGNGLLSSVEPASDGC 157

The following BLAST results are available for this feature:

BLAST of CmoCh18G000300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPS1_ARATH	1.5e-61	75.63	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
CLPS_SYNE7	2.7e-18	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
CLPS_SYNP6	1.3e-15	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
CLPS_GLOVI	4.5e-13	51.19	ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain...	[more]
CLPS_SYNS9	5.9e-13	46.84	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of CmoCh18G000300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSY6_CUCSA	2.1e-78	91.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042210 PE=3 SV=1	[more]
M5WB18_PRUPE	3.2e-66	78.85	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012720mg PE=4 SV=1	[more]
A0A059A4N4_EUCGR	6.7e-64	77.85	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K02665 PE=4 ...	[more]
W9RDX7_9ROSA	8.7e-64	77.22	ATP-dependent Clp protease adapter protein ClpS OS=Morus notabilis GN=L484_00428...	[more]
D7SIW4_VITVI	6.2e-62	75.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g04020 PE=4 SV=...	[more]

BLAST of CmoCh18G000300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68660.1	8.6e-63	75.63	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]

BLAST of CmoCh18G000300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439385\|ref\|XP_004137466.1\|	3.1e-78	91.14	PREDICTED: uncharacterized protein LOC101211403 [Cucumis sativus]	[more]
gi\|659066701\|ref\|XP_008456997.1\|	8.9e-78	90.51	PREDICTED: uncharacterized protein LOC103496767 [Cucumis melo]	[more]
gi\|658032738\|ref\|XP_008351876.1\|	2.1e-66	78.21	PREDICTED: uncharacterized protein LOC103415312 [Malus domestica]	[more]
gi\|595849445\|ref\|XP_007209725.1\|	4.6e-66	78.85	hypothetical protein PRUPE_ppa012720mg [Prunus persica]	[more]
gi\|657966102\|ref\|XP_008374733.1\|	3.9e-65	76.92	PREDICTED: uncharacterized protein LOC103437976 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003769	ClpS_core
IPR014719	Ribosomal_L7/12_C/ClpS-like

Vocabulary: **Biological Process**
Term	Definition
GO:0030163	protein catabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G000300.1	CmoCh18G000300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 79..144 score: 9.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 58..154 score: 1.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	unknown	SSF54736	ClpS-like	coord: 75..152 score: 3.03
None	No IPR available	PANTHER	PTHR33473	FAMILY NOT NAMED	coord: 1..158 score: 1.3E
None	No IPR available	PANTHER	PTHR33473:SF2	SUBFAMILY NOT NAMED	coord: 1..158 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G000300	Cucsa.113680	Cucumber (Gy14) v1	cgycmoB0264
CmoCh18G000300	CmaCh13G010360	Cucurbita maxima (Rimu)	cmacmoB224
CmoCh18G000300	CmaCh18G000340	Cucurbita maxima (Rimu)	cmacmoB408
CmoCh18G000300	Cla018514	Watermelon (97103) v1	cmowmB389
CmoCh18G000300	Csa1G042210	Cucumber (Chinese Long) v2	cmocuB380
CmoCh18G000300	MELO3C002078	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G000300	ClCG04G011240	Watermelon (Charleston Gray)	cmowcgB357
CmoCh18G000300	CSPI01G06660	Wild cucumber (PI 183967)	cmocpiB383
CmoCh18G000300	Lsi02G001670	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G000300	Cp4.1LG20g01120	Cucurbita pepo (Zucchini)	cmocpeB404
CmoCh18G000300	MELO3C002078.2	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G000300	CsaV3_1G006510	Cucumber (Chinese Long) v3	cmocucB0457
CmoCh18G000300	Cla97C04G078110	Watermelon (97103) v2	cmowmbB402
CmoCh18G000300	Bhi08G001010	Wax gourd	cmowgoB0516
CmoCh18G000300	CsGy1G006360	Cucumber (Gy14) v2	cgybcmoB082
CmoCh18G000300	Carg22758	Silver-seed gourd	carcmoB0699
CmoCh18G000300	Carg04804	Silver-seed gourd	carcmoB0527

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G000300	CmoCh13G010760	Cucurbita moschata (Rifu)	cmocmoB171

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G000300	Cucurbita pepo (Zucchini)	cmocpeB391
CmoCh18G000300	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G000300	Cucurbita pepo (Zucchini)	cmocpeB413
CmoCh18G000300	Silver-seed gourd	carcmoB0812
CmoCh18G000300	Wax gourd	cmowgoB0546
CmoCh18G000300	Cucurbita moschata (Rifu)	cmocmoB064
CmoCh18G000300	Cucurbita moschata (Rifu)	cmocmoB100
CmoCh18G000300	Cucurbita maxima (Rimu)	cmacmoB136