Cucsa.104580 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.104580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTrafficking protein particle complex subunit 12
Locationscaffold00927 : 3045696 .. 3046739 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGATCCCTCAACGATCTTGCTCACGATCTTTTCTCTCTTCAAGATCTCGCCACTCGCGGTTCATGGCGTTCAATTTTAGATAAGGTTGCCCGAGCCCGAGCTCTCACCCTGCTTCAGAAGCCCCATGACCACCTCACTTACCTATCCTACAATGTCCTTGCCCTTGTCAAACTCCGACGTTTCGCCGAAGCCCTGGCAGAACTTGATTCTCTTGAAGATCTCAATAGCTCTCAATACAGGTATGAATCGTACCCTAGCGTGTACCCTAATCGAACCGGCTCCATGGTCCCCTTTTCACTTCGGTGGCTGCAAGCGCTAATCCCCATCAAAATGGGCGAGCGTCAACATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAATTGAAGGATAAAGAGGAGAAAAAGCTCGATGTCTCTGTGAACTTGTGGAAGAAAAGGGTAGTGTTTGTGATTAATTGTATTATTGGTCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACCTTGATTAATAATTTGTTAAGTGAGGATTTCTCAGATCCTGCTCTGATTTCGAAACTTGGGTATATACAAATGCACGCTGGAGATATTGAAGGAGCTAAACGTTCGTTTAATCGGATTGAGGAGTTGGTTAAAGAGGGGAAAAGTAGTGGGTCGTTAAGCGAAGTAGAGATGAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGCAAGGACTATCTATCAGCTGTGAGGGAATATGAGGAGTGTATTGAGAGGGATAATTCGGACATGGTGGCTATTAACAATAAGGCTCTTTGCTTGATGTACTTGCGGGATTTAGCAGATTCGATTAAGGTGCTTGAAAATGCACTGGAAAGAGTTCCGACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTATGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCTCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTAGAATTTAA

mRNA sequence

TTTGGATCCCTCAACGATCTTGCTCACGATCTTTTCTCTCTTCAAGATCTCGCCACTCGCGGTTCATGGCGTTCAATTTTAGATAAGGTTGCCCGAGCCCGAGCTCTCACCCTGCTTCAGAAGCCCCATGACCACCTCACTTACCTATCCTACAATGTCCTTGCCCTTGTCAAACTCCGACGTTTCGCCGAAGCCCTGGCAGAACTTGATTCTCTTGAAGATCTCAATAGCTCTCAATACAGGTATGAATCGTACCCTAGCGTGTACCCTAATCGAACCGGCTCCATGGTCCCCTTTTCACTTCGGTGGCTGCAAGCGCTAATCCCCATCAAAATGGGCGAGCGTCAACATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAATTGAAGGATAAAGAGGAGAAAAAGCTCGATGTCTCTGTGAACTTGTGGAAGAAAAGGGTAGTGTTTGTGATTAATTGTATTATTGGTCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACCTTGATTAATAATTTGTTAAGTGAGGATTTCTCAGATCCTGCTCTGATTTCGAAACTTGGGTATATACAAATGCACGCTGGAGATATTGAAGGAGCTAAACGTTCGTTTAATCGGATTGAGGAGTTGGTTAAAGAGGGGAAAAGTAGTGGGTCGTTAAGCGAAGTAGAGATGAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGCAAGGACTATCTATCAGCTGTGAGGGAATATGAGGAGTGTATTGAGAGGGATAATTCGGACATGGTGGCTATTAACAATAAGGCTCTTTGCTTGATGTACTTGCGGGATTTAGCAGATTCGATTAAGGTGCTTGAAAATGCACTGGAAAGAGTTCCGACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTATGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCTCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTAGAATTTAA

Coding sequence (CDS)

TTTGGATCCCTCAACGATCTTGCTCACGATCTTTTCTCTCTTCAAGATCTCGCCACTCGCGGTTCATGGCGTTCAATTTTAGATAAGGTTGCCCGAGCCCGAGCTCTCACCCTGCTTCAGAAGCCCCATGACCACCTCACTTACCTATCCTACAATGTCCTTGCCCTTGTCAAACTCCGACGTTTCGCCGAAGCCCTGGCAGAACTTGATTCTCTTGAAGATCTCAATAGCTCTCAATACAGGTATGAATCGTACCCTAGCGTGTACCCTAATCGAACCGGCTCCATGGTCCCCTTTTCACTTCGGTGGCTGCAAGCGCTAATCCCCATCAAAATGGGCGAGCGTCAACATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAATTGAAGGATAAAGAGGAGAAAAAGCTCGATGTCTCTGTGAACTTGTGGAAGAAAAGGGTAGTGTTTGTGATTAATTGTATTATTGGTCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACCTTGATTAATAATTTGTTAAGTGAGGATTTCTCAGATCCTGCTCTGATTTCGAAACTTGGGTATATACAAATGCACGCTGGAGATATTGAAGGAGCTAAACGTTCGTTTAATCGGATTGAGGAGTTGGTTAAAGAGGGGAAAAGTAGTGGGTCGTTAAGCGAAGTAGAGATGAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGCAAGGACTATCTATCAGCTGTGAGGGAATATGAGGAGTGTATTGAGAGGGATAATTCGGACATGGTGGCTATTAACAATAAGGCTCTTTGCTTGATGTACTTGCGGGATTTAGCAGATTCGATTAAGGTGCTTGAAAATGCACTGGAAAGAGTTCCGACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTATGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCTCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTAGAATTTAA

Protein sequence

FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI*
Homology
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BLAST of Cucsa.104580 vs. Swiss-Prot
Match: TPC12_HUMAN (Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1 SV=3)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-30
Identity = 99/357 (27.73%), Postives = 171/357 (47.90%), Query Frame = 1 

Query: 14  LQDLATRGSWRSILDKVAR---------ARALTLLQKPHDHLTYLSYNVLALVKLRRFAE 73
           L+ L +  +WR+ +D   R          ++  L     D L      +  LVKL  F  
Sbjct: 384 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQN 443

Query: 74  ALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFYE 133
           A  E +   +L+     YE YP VYP R GSMVPFS+R L A +   +G  Q  LDR ++
Sbjct: 444 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 503

Query: 134 LLDFVQSKLKDKEEKKLD-------------VSVNLWKKRVVFVINCIIGHHLSNKEFGV 193
           +       L + E+   +              S+ LW+ R+  V+  +    L  K++ +
Sbjct: 504 VKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVL 563

Query: 194 CLTLINNLLSE-DFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVE 253
            +   ++++      +P L+S +G I +  GDI+ A++ F  +E++ ++      L  ++
Sbjct: 564 AVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK------LDGLQ 623

Query: 254 MKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVL 313
            K +V  N A + L   ++  A R + E +  D  + VA NN A+CL+YL  L DS++ L
Sbjct: 624 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQL 683

Query: 314 ENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           E  +++ P   L+E+V+ NL +MYEL      + K+ L   +A    D F++   ++
Sbjct: 684 EAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQALLEAVAGKEGDSFNTQCLKL 734

[Close]
BLAST of Cucsa.104580 vs. Swiss-Prot
Match: TPC12_MOUSE (Trafficking protein particle complex subunit 12 OS=Mus musculus GN=Trappc12 PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-30
Identity = 95/321 (29.60%), Postives = 160/321 (49.84%), Query Frame = 1 

Query: 44  DHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRW 103
           D L      +  LVKL  F  A  E +   +L+     YE YP VYP R GSMVPFS+R 
Sbjct: 485 DSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRI 544

Query: 104 LQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEE-------------KKLDVSVNLWKK 163
           L A +   +G  Q  LDR + +       L + E+             +    SV LW+ 
Sbjct: 545 LHAELQQYLGNPQESLDRLHRVKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRS 604

Query: 164 RVVFVINCIIGHHLSNKEFGVC----LTLINNLLSEDFSDPALISKLGYIQMHAGDIEGA 223
           R+  V+  +    L  K++ +     LT+I     ++   P L+S +G I +  GDI+ A
Sbjct: 605 RLGRVLYSMANCLLLMKDYVLAVDAYLTVIKYYPEQE---PQLLSGIGRILLQIGDIKTA 664

Query: 224 KRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSD 283
           ++ F  +E++ ++      L  ++ K +V  N+A ++L   ++  A + + E +  D ++
Sbjct: 665 EKYFQDVEKVTQK------LDGLQGKIMVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTN 724

Query: 284 MVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKR 343
            VA NN A+CL+YL  L DS++ LE  +++ P   L+E+V+ NL +MYEL      + K+
Sbjct: 725 AVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQ 784

Query: 344 TLNNWIARVAPDDFDSSSTRI 348
           +L   +A    D F++   ++
Sbjct: 785 SLLEAVASKEGDSFNTQCLKL 796

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BLAST of Cucsa.104580 vs. TrEMBL
Match: A0A0A0KGA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500620 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 5.2e-194
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 1 

Query: 1   FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 60
           FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR
Sbjct: 41  FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 100

Query: 61  RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 120
           RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD
Sbjct: 101 RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 160

Query: 121 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 180
           RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL
Sbjct: 161 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 220

Query: 181 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA 240
           SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA
Sbjct: 221 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA 280

Query: 241 LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV 300
           LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV
Sbjct: 281 LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV 340

Query: 301 ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI
Sbjct: 341 ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 387

[Close]
BLAST of Cucsa.104580 vs. TrEMBL
Match: A0A061DJR3_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TCM_001171 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 3.7e-147
Identity = 258/349 (73.93%), Postives = 302/349 (86.53%), Query Frame = 1 

Query: 1   FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 60
           FGSLNDLAH+L SLQDLATRGSWRSILDKV+RAR+L LL  PHDHL Y+SYNVLAL KLR
Sbjct: 15  FGSLNDLAHELASLQDLATRGSWRSILDKVSRARSLNLLTNPHDHLIYVSYNVLALSKLR 74

Query: 61  RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 120
           RF +A  ELDSL D NS  Y+YE+YP VYPNR+GSMVPFSLR++ A +PIK+G RQ GLD
Sbjct: 75  RFTDAANELDSLHDFNSHHYQYETYPQVYPNRSGSMVPFSLRFIHAQLPIKLGNRQEGLD 134

Query: 121 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 180
           RFY LL+F++ K+K KE   L+ SV +WKKR  FV+NCIIGHHL  KEF VCL LI +L+
Sbjct: 135 RFYLLLNFIRQKIKQKERDNLEESVKIWKKRENFVLNCIIGHHLGAKEFNVCLDLIKDLI 194

Query: 181 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSG--SLSEVEMKNLVNRN 240
           + D+SDP L+SKLGYIQM  GD+EGAK SF+ +E ++ EGK+ G   LSEVE +NLVNRN
Sbjct: 195 NHDYSDPFLVSKLGYIQMQIGDLEGAKGSFHLVETMLNEGKNGGYSFLSEVEFRNLVNRN 254

Query: 241 KALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVP 300
           KALV+LVGKDY+SAVREYEECIERD++D+VAINNKALCLMYLRDL+DSIKVLENALERVP
Sbjct: 255 KALVYLVGKDYVSAVREYEECIERDHADVVAINNKALCLMYLRDLSDSIKVLENALERVP 314

Query: 301 TVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           T+ALNET+++NLCSMYELAYVNHSEIKRTL+NWIARVAPDDFD+S TR+
Sbjct: 315 TMALNETLVINLCSMYELAYVNHSEIKRTLSNWIARVAPDDFDASCTRV 363

[Close]
BLAST of Cucsa.104580 vs. TrEMBL
Match: I1MYU6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G019200 PE=4 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 4.8e-147
Identity = 257/344 (74.71%), Postives = 307/344 (89.24%), Query Frame = 1 

Query: 4   LNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRFA 63
           ++D  HD+ SL++LA RG+WRSI+DKV+RARAL+LL KPHDHLTYL++N L+  KLRRF 
Sbjct: 19  IDDACHDMSSLEELANRGAWRSIIDKVSRARALSLLHKPHDHLTYLAFNALSFTKLRRFN 78

Query: 64  EALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFY 123
           EA AELDSLEDL+SS YRYE+YP +YPNR GSMVPFSLRWL ALIPIK+G+RQ G+DRFY
Sbjct: 79  EASAELDSLEDLDSSHYRYETYPKIYPNRIGSMVPFSLRWLHALIPIKLGQRQQGMDRFY 138

Query: 124 ELLDFVQSKLKDKEE-KKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLSE 183
            LLDFV+ K+K+KE+   L VS+NLW+KR VFV+NCIIG+HLS KEFGVCL+L+  LLS 
Sbjct: 139 ILLDFVRGKIKEKEKLSNLGVSLNLWRKREVFVVNCIIGNHLSQKEFGVCLSLMKELLSR 198

Query: 184 DFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALV 243
           D SDP L+S+LGY+Q+  GD+EGAK SF ++EEL   GKS+GSLSEVE +NLVNRNKALV
Sbjct: 199 DCSDPLLVSQLGYMQLQIGDLEGAKVSFLKVEEL---GKSNGSLSEVEFRNLVNRNKALV 258

Query: 244 FLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVAL 303
           +LVGKDY+SAVREYEECIERD++D+VA+NNKALCLMYLRDL+DSIKVLE+ALERVPTVAL
Sbjct: 259 YLVGKDYVSAVREYEECIERDSADVVAVNNKALCLMYLRDLSDSIKVLESALERVPTVAL 318

Query: 304 NETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTR 347
           NET++VNLCSMYELAYVNHS+IKRTL+NWIARVAPDDFD+S TR
Sbjct: 319 NETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDASCTR 359

[Close]
BLAST of Cucsa.104580 vs. TrEMBL
Match: G7J4D2_MEDTR (Trafficking protein particle complex subunit-like protein OS=Medicago truncatula GN=MTR_3g087760 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 6.9e-146
Identity = 255/343 (74.34%), Postives = 299/343 (87.17%), Query Frame = 1 

Query: 4   LNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRFA 63
           L++L HDL SLQDLA RG+WRSI+DKVARARAL+LLQKPHDHLTYL++N LA  KLRRF 
Sbjct: 19  LDELCHDLHSLQDLANRGAWRSIIDKVARARALSLLQKPHDHLTYLAFNALAFTKLRRFN 78

Query: 64  EALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFY 123
           EA +ELDS+EDL+SS YRYE+YP VYPNR GSMVPFSLRWL ALIPIK+G+RQ G+DR Y
Sbjct: 79  EASSELDSVEDLDSSHYRYETYPKVYPNRVGSMVPFSLRWLHALIPIKLGQRQQGIDRLY 138

Query: 124 ELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLSED 183
            LLDFV+ K++ KE+  L  SV +W+KR VFV+NCIIGHHLS+KEFGVCL+LI  L+S D
Sbjct: 139 NLLDFVREKIRIKEDDNLSASVRVWRKREVFVVNCIIGHHLSHKEFGVCLSLIKTLISRD 198

Query: 184 FSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVF 243
             DP LIS+LGYIQ+  GD+EGAK SF + E    +GK+ GSLSEVE KNL NRNKAL++
Sbjct: 199 PEDPFLISQLGYIQLQTGDLEGAKDSFLKAE---GDGKNHGSLSEVEFKNLANRNKALIY 258

Query: 244 LVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVALN 303
           +VGKDY+SAVREY+ CIERD+SD+VA NNKALCLMYLRDL+DSIKVLENALERVPTVALN
Sbjct: 259 MVGKDYVSAVREYDVCIERDHSDIVAFNNKALCLMYLRDLSDSIKVLENALERVPTVALN 318

Query: 304 ETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTR 347
           ET++VNLCSMYELAYVNHS+IKRTL++WIARVAPDDFDS+ TR
Sbjct: 319 ETIVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDSTCTR 358

[Close]
BLAST of Cucsa.104580 vs. TrEMBL
Match: A0A0L9UAS8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g304400 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 1.5e-145
Identity = 256/343 (74.64%), Postives = 303/343 (88.34%), Query Frame = 1 

Query: 6   DLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRFAEA 65
           D  HD+ SL+DLA RG+WRS++DKV+RARAL+LL KPHDHLTYL++N LA  KLRRF EA
Sbjct: 21  DACHDMNSLEDLANRGAWRSVIDKVSRARALSLLHKPHDHLTYLAFNALAFTKLRRFNEA 80

Query: 66  LAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFYEL 125
            AELDSLEDL+SS YRYE+YP +YPNR GSMVPFSLRWL ALIPIK+G+RQ G+DRFY L
Sbjct: 81  SAELDSLEDLDSSHYRYETYPKIYPNRVGSMVPFSLRWLHALIPIKLGQRQQGIDRFYTL 140

Query: 126 LDFVQSKLKDK-EEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLS-ED 185
           LDFV+ K+++K E   L VS+ LW+KR VFV+NCIIGHHLS KEFGVCL+L+  LLS +D
Sbjct: 141 LDFVRGKIREKGENNNLGVSLKLWRKREVFVVNCIIGHHLSQKEFGVCLSLMKELLSRDD 200

Query: 186 FSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVF 245
            SDP L+S+LGY+Q+  GD+EGAK SF ++E    EGK++GSLSEVE KNLVNRNKALV+
Sbjct: 201 GSDPLLVSQLGYMQLQIGDLEGAKVSFLKVES---EGKNNGSLSEVEFKNLVNRNKALVY 260

Query: 246 LVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVALN 305
           LVGKDY+SAVREYEECIERD++D+VA+NNKALCLMYLRDL+DSIKVLE+ALERVPTVALN
Sbjct: 261 LVGKDYVSAVREYEECIERDSADVVAVNNKALCLMYLRDLSDSIKVLESALERVPTVALN 320

Query: 306 ETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTR 347
           ET++VNLCSMYELAYVNHS+IKRTL+NWIARVAPDDFD+S TR
Sbjct: 321 ETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDASCTR 360

[Close]
BLAST of Cucsa.104580 vs. TAIR10
Match: AT4G39820.1 (AT4G39820.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 491.9 bits (1265), Expect = 3.3e-139
Identity = 230/347 (66.28%), Postives = 294/347 (84.73%), Query Frame = 1 

Query: 1   FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 60
           F SL++L HDL SL +L+TRGSW++IL+K+++ARAL LL KPH+HLTYL+Y V+AL KLR
Sbjct: 62  FNSLDELTHDLGSLHELSTRGSWQAILEKISQARALFLLTKPHEHLTYLTYQVMALAKLR 121

Query: 61  RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 120
           R  EA  EL+SL D + + YRYES+P +YPNR GSMVPFSLRWL ALIP K+G RQ GLD
Sbjct: 122 RSDEASHELNSLHDFDGTHYRYESFPEIYPNRRGSMVPFSLRWLYALIPTKLGNRQEGLD 181

Query: 121 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 180
           R Y LLDFV+ ++++KE + L+ SV LWKKR  FV+NC++G HL +KEFGV L L+  L+
Sbjct: 182 RLYVLLDFVRDRIREKESQSLESSVELWKKRETFVMNCLLGFHLGHKEFGVSLDLMKELI 241

Query: 181 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA 240
           + D  DP LISKLG +QM  GD+EGAK +F+R+E+++ EGKS+G L+E++  NLV RNKA
Sbjct: 242 NRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNLVGRNKA 301

Query: 241 LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV 300
           LV++V KDY+SAVREY++CIERDNSD++A+NNKALCLMYLRDL+D+IKV+E+ALERVPT 
Sbjct: 302 LVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAIKVMESALERVPTA 361

Query: 301 ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           ALNE+++VNLCSMYELAYVNH+++KRTLNNWIARVAPDDFDSS TR+
Sbjct: 362 ALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTRV 408

[Close]
BLAST of Cucsa.104580 vs. NCBI nr
Match: gi|449451463|ref|XP_004143481.1| (PREDICTED: trafficking protein particle complex subunit 12 [Cucumis sativus])

HSP 1 Score: 684.9 bits (1766), Expect = 7.5e-194
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 1 

Query: 1   FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 60
           FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR
Sbjct: 41  FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 100

Query: 61  RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 120
           RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD
Sbjct: 101 RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 160

Query: 121 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 180
           RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL
Sbjct: 161 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 220

Query: 181 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA 240
           SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA
Sbjct: 221 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA 280

Query: 241 LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV 300
           LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV
Sbjct: 281 LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV 340

Query: 301 ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI
Sbjct: 341 ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 387

[Close]
BLAST of Cucsa.104580 vs. NCBI nr
Match: gi|659080152|ref|XP_008440638.1| (PREDICTED: trafficking protein particle complex subunit 12 [Cucumis melo])

HSP 1 Score: 671.0 bits (1730), Expect = 1.1e-189
Identity = 341/347 (98.27%), Postives = 343/347 (98.85%), Query Frame = 1 

Query: 1   FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 60
           FGSLNDLAHDL SLQDLATRGSWRSILDKVARARAL+LLQKPHDHLTYLSYNVLALVKLR
Sbjct: 41  FGSLNDLAHDLSSLQDLATRGSWRSILDKVARARALSLLQKPHDHLTYLSYNVLALVKLR 100

Query: 61  RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 120
           RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWL ALIPIKMGERQ GLD
Sbjct: 101 RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLD 160

Query: 121 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 180
           RFYELLDFVQSKLKDKEEKKLDVSVNLWKKR VFVINCIIGHHLSNKEFGVCLTLINNLL
Sbjct: 161 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKREVFVINCIIGHHLSNKEFGVCLTLINNLL 220

Query: 181 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKA 240
           SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVE+KNLVNRNKA
Sbjct: 221 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEIKNLVNRNKA 280

Query: 241 LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV 300
           LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV
Sbjct: 281 LVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTV 340

Query: 301 ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI
Sbjct: 341 ALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 387

[Close]
BLAST of Cucsa.104580 vs. NCBI nr
Match: gi|1009146533|ref|XP_015890931.1| (PREDICTED: trafficking protein particle complex subunit 12 [Ziziphus jujuba])

HSP 1 Score: 539.7 bits (1389), Expect = 3.9e-150
Identity = 268/353 (75.92%), Postives = 310/353 (87.82%), Query Frame = 1 

Query: 1   FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 60
           FGSLNDL H+L SLQDLA+RGSWRS++DKVARAR+L+LLQKPHDHLTYLSYNVLAL KLR
Sbjct: 35  FGSLNDLTHELASLQDLASRGSWRSVIDKVARARSLSLLQKPHDHLTYLSYNVLALTKLR 94

Query: 61  RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 120
           RF EA  ELDSLEDL+ S Y YESYP+VYPNR GSMVPFSLRWL ALIPIK+G RQ GLD
Sbjct: 95  RFTEASTELDSLEDLDGSHYHYESYPNVYPNRVGSMVPFSLRWLHALIPIKLGNRQDGLD 154

Query: 121 RFYELLDFVQSKLKDKEEKK----LDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLI 180
           R Y LLDFV++K+++KE++     L VSV++WKKR VFV+N IIG HL+NKEF VCL+LI
Sbjct: 155 RLYFLLDFVRTKVEEKEKENDGSDLSVSVSVWKKREVFVVNSIIGLHLNNKEFSVCLSLI 214

Query: 181 NNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEG--KSSGSLSEVEMKNL 240
             LLS D  DP L+SKLGYIQM  GD+EGAK SFNR+E L++    K+ GSL+E++  NL
Sbjct: 215 KELLSRDPGDPILVSKLGYIQMQIGDLEGAKSSFNRVEGLMEVSFEKNEGSLNEIQFMNL 274

Query: 241 VNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENAL 300
           VNRNKALV++VGKDY+SAVREYE+CIERD+SD+VA+NNKALCLMYLRDL+DSIKVLENAL
Sbjct: 275 VNRNKALVYMVGKDYVSAVREYEKCIERDHSDVVALNNKALCLMYLRDLSDSIKVLENAL 334

Query: 301 ERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           ERVPTVALNET++VNLCSMYELAYVNHS+IKRTL+NWIARVAPDDFDSS TRI
Sbjct: 335 ERVPTVALNETIVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDSSCTRI 387

[Close]
BLAST of Cucsa.104580 vs. NCBI nr
Match: gi|502135762|ref|XP_004502444.1| (PREDICTED: trafficking protein particle complex subunit 12 [Cicer arietinum])

HSP 1 Score: 533.5 bits (1373), Expect = 2.8e-148
Identity = 260/344 (75.58%), Postives = 304/344 (88.37%), Query Frame = 1 

Query: 3   SLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRF 62
           +L++L H+L SLQDLA RG+WRSI+DKVARARAL+LLQKPHDHLTYL++N LA  KLRRF
Sbjct: 18  TLDELCHELNSLQDLANRGAWRSIIDKVARARALSLLQKPHDHLTYLTFNTLAFTKLRRF 77

Query: 63  AEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRF 122
            EA AELDS+EDL+SS YRYE+YP +YPNR GSMVPFSLRWL ALIPIK+G+RQ G+DR 
Sbjct: 78  NEASAELDSVEDLDSSHYRYETYPKIYPNRVGSMVPFSLRWLHALIPIKLGQRQQGIDRL 137

Query: 123 YELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLSE 182
           Y LLDFV+ K+KDKE     VS+ +W+KR VFV+NCIIGHHLS+KEFGVCL+L+ NLLS 
Sbjct: 138 YSLLDFVREKIKDKENGNFAVSLRVWRKREVFVVNCIIGHHLSHKEFGVCLSLMKNLLSR 197

Query: 183 DFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALV 242
           D  DP LIS+LGYIQ+  GD+EGAK SF + E    EGKS+GSLSEVE KNLVNRNKALV
Sbjct: 198 DSFDPFLISQLGYIQLQTGDLEGAKASFLKAE---VEGKSNGSLSEVEFKNLVNRNKALV 257

Query: 243 FLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVAL 302
           ++VGKDY+SAVREY+ECIERD+SD+VA NNKALCLMYLRDL+DSIKVLENALERVPTVAL
Sbjct: 258 YMVGKDYVSAVREYDECIERDHSDIVAFNNKALCLMYLRDLSDSIKVLENALERVPTVAL 317

Query: 303 NETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTR 347
           NET++VNLCSMYELAYVNHS+IKRTL++WIARVAPDDFD++ TR
Sbjct: 318 NETLVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDATCTR 358

[Close]
BLAST of Cucsa.104580 vs. NCBI nr
Match: gi|590707505|ref|XP_007048024.1| (Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma cacao])

HSP 1 Score: 529.3 bits (1362), Expect = 5.2e-147
Identity = 258/349 (73.93%), Postives = 302/349 (86.53%), Query Frame = 1 

Query: 1   FGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLR 60
           FGSLNDLAH+L SLQDLATRGSWRSILDKV+RAR+L LL  PHDHL Y+SYNVLAL KLR
Sbjct: 15  FGSLNDLAHELASLQDLATRGSWRSILDKVSRARSLNLLTNPHDHLIYVSYNVLALSKLR 74

Query: 61  RFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLD 120
           RF +A  ELDSL D NS  Y+YE+YP VYPNR+GSMVPFSLR++ A +PIK+G RQ GLD
Sbjct: 75  RFTDAANELDSLHDFNSHHYQYETYPQVYPNRSGSMVPFSLRFIHAQLPIKLGNRQEGLD 134

Query: 121 RFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLL 180
           RFY LL+F++ K+K KE   L+ SV +WKKR  FV+NCIIGHHL  KEF VCL LI +L+
Sbjct: 135 RFYLLLNFIRQKIKQKERDNLEESVKIWKKRENFVLNCIIGHHLGAKEFNVCLDLIKDLI 194

Query: 181 SEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSG--SLSEVEMKNLVNRN 240
           + D+SDP L+SKLGYIQM  GD+EGAK SF+ +E ++ EGK+ G   LSEVE +NLVNRN
Sbjct: 195 NHDYSDPFLVSKLGYIQMQIGDLEGAKGSFHLVETMLNEGKNGGYSFLSEVEFRNLVNRN 254

Query: 241 KALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVP 300
           KALV+LVGKDY+SAVREYEECIERD++D+VAINNKALCLMYLRDL+DSIKVLENALERVP
Sbjct: 255 KALVYLVGKDYVSAVREYEECIERDHADVVAINNKALCLMYLRDLSDSIKVLENALERVP 314

Query: 301 TVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 348
           T+ALNET+++NLCSMYELAYVNHSEIKRTL+NWIARVAPDDFD+S TR+
Sbjct: 315 TMALNETLVINLCSMYELAYVNHSEIKRTLSNWIARVAPDDFDASCTRV 363

The following BLAST results are available for this feature:
BLAST of Cucsa.104580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TPC12_HUMAN1.8e-3027.73Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1... [more]
TPC12_MOUSE4.0e-3029.60Trafficking protein particle complex subunit 12 OS=Mus musculus GN=Trappc12 PE=1... [more]
BLAST of Cucsa.104580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGA7_CUCSA5.2e-194100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500620 PE=4 SV=1[more]
A0A061DJR3_THECC3.7e-14773.93Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TC... [more]
I1MYU6_SOYBN4.8e-14774.71Uncharacterized protein OS=Glycine max GN=GLYMA_18G019200 PE=4 SV=1[more]
G7J4D2_MEDTR6.9e-14674.34Trafficking protein particle complex subunit-like protein OS=Medicago truncatula... [more]
A0A0L9UAS8_PHAAN1.5e-14574.64Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g304400 PE=4 SV=1[more]
BLAST of Cucsa.104580 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39820.13.3e-13966.28 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cucsa.104580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451463|ref|XP_004143481.1|7.5e-194100.00PREDICTED: trafficking protein particle complex subunit 12 [Cucumis sativus][more]
gi|659080152|ref|XP_008440638.1|1.1e-18998.27PREDICTED: trafficking protein particle complex subunit 12 [Cucumis melo][more]
gi|1009146533|ref|XP_015890931.1|3.9e-15075.92PREDICTED: trafficking protein particle complex subunit 12 [Ziziphus jujuba][more]
gi|502135762|ref|XP_004502444.1|2.8e-14875.58PREDICTED: trafficking protein particle complex subunit 12 [Cicer arietinum][more]
gi|590707505|ref|XP_007048024.1|5.2e-14773.93Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.104580.1Cucsa.104580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 44..77
score: 9.8E-12coord: 185..300
score: 9.8
IPR011990Tetratricopeptide-like helical domainunknownSSF48452TPR-likecoord: 176..302
score: 2.98
IPR013026Tetratricopeptide repeat-containing domainPROFILEPS50293TPR_REGIONcoord: 233..300
score: 9
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 233..266
score: 190.0coord: 187..220
score: 120.0coord: 267..300
score:
NoneNo IPR availableunknownCoilCoilcoord: 119..139
scor
NoneNo IPR availablePANTHERPTHR21581D-ALANYL-D-ALANINE CARBOXYPEPTIDASEcoord: 3..347
score: 5.6
NoneNo IPR availablePANTHERPTHR21581:SF6TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 12coord: 3..347
score: 5.6