CsaV3_6G045650 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G045650
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	trafficking protein particle complex subunit 12
Location	chr6 : 27039658 .. 27040821 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTGAGTCACCGTCACCGTCACCTGACTCTCACTCTCACAGCACTTCCGATCCCGAAACCCTAACAACTGGATTCGAAAATTTGGCAATTTCCTCGGACCCTTTAACCACTCAGTTTGGATCCCTCAACGATCTTGCTCACGATCTTTTCTCTCTTCAAGATCTCGCCACTCGCGGTTCATGGCGTTCAATTTTAGATAAGGTTGCCCGAGCCCGAGCTCTCACCCTGCTTCAGAAGCCCCATGACCACCTCACTTACCTATCCTACAATGTCCTTGCCCTTGTCAAACTCCGACGTTTCGCCGAAGCCCTGGCAGAACTTGATTCTCTTGAAGATCTCAATAGCTCTCAATACAGGTATGAATCGTACCCTAGCGTGTACCCTAATCGAACCGGCTCCATGGTCCCCTTTTCACTTCGGTGGCTGCAAGCGCTAATCCCCATCAAAATGGGCGAGCGTCAACATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAATTGAAGGATAAAGAGGAGAAAAAGCTCGATGTCTCTGTGAACTTGTGGAAGAAAAGGGTAGTGTTTGTGATTAATTGTATTATTGGCCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACCTTGATTAATAATTTGTTAAGTGAGGATTTCTCAGATCCTGCTCTGATTTCGAAACTTGGGTATATACAAATGCACGCTGGAGATATTGAAGGAGCTAAACGTTCGTTTAATCGGATTGAGGAGTTGGTTAAAGAGGGGAAAAGTAGTGGGTCGTTAAGCGAAGTAGAGATGAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGCAAGGACTATCTATCAGCTGTGAGGGAATATGAGGAGTGTATTGAGAGGGATAATTCGGACATGGTGGCTATTAACAATAAGGCTCTTTGCTTGATGTACTTGCGGGATTTAGCAGATTCGATTAAGGTGCTTGAAAATGCACTGGAAAGAGTTCCGACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTATGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCTCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTAGAATTTAA

mRNA sequence

ATGGAAACTGAGTCACCGTCACCGTCACCTGACTCTCACTCTCACAGCACTTCCGATCCCGAAACCCTAACAACTGGATTCGAAAATTTGGCAATTTCCTCGGACCCTTTAACCACTCAGTTTGGATCCCTCAACGATCTTGCTCACGATCTTTTCTCTCTTCAAGATCTCGCCACTCGCGGTTCATGGCGTTCAATTTTAGATAAGGTTGCCCGAGCCCGAGCTCTCACCCTGCTTCAGAAGCCCCATGACCACCTCACTTACCTATCCTACAATGTCCTTGCCCTTGTCAAACTCCGACGTTTCGCCGAAGCCCTGGCAGAACTTGATTCTCTTGAAGATCTCAATAGCTCTCAATACAGGTATGAATCGTACCCTAGCGTGTACCCTAATCGAACCGGCTCCATGGTCCCCTTTTCACTTCGGTGGCTGCAAGCGCTAATCCCCATCAAAATGGGCGAGCGTCAACATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAATTGAAGGATAAAGAGGAGAAAAAGCTCGATGTCTCTGTGAACTTGTGGAAGAAAAGGGTAGTGTTTGTGATTAATTGTATTATTGGCCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACCTTGATTAATAATTTGTTAAGTGAGGATTTCTCAGATCCTGCTCTGATTTCGAAACTTGGGTATATACAAATGCACGCTGGAGATATTGAAGGAGCTAAACGTTCGTTTAATCGGATTGAGGAGTTGGTTAAAGAGGGGAAAAGTAGTGGGTCGTTAAGCGAAGTAGAGATGAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGCAAGGACTATCTATCAGCTGTGAGGGAATATGAGGAGTGTATTGAGAGGGATAATTCGGACATGGTGGCTATTAACAATAAGGCTCTTTGCTTGATGTACTTGCGGGATTTAGCAGATTCGATTAAGGTGCTTGAAAATGCACTGGAAAGAGTTCCGACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTATGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCTCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTAGAATTTAA

Coding sequence (CDS)

ATGGAAACTGAGTCACCGTCACCGTCACCTGACTCTCACTCTCACAGCACTTCCGATCCCGAAACCCTAACAACTGGATTCGAAAATTTGGCAATTTCCTCGGACCCTTTAACCACTCAGTTTGGATCCCTCAACGATCTTGCTCACGATCTTTTCTCTCTTCAAGATCTCGCCACTCGCGGTTCATGGCGTTCAATTTTAGATAAGGTTGCCCGAGCCCGAGCTCTCACCCTGCTTCAGAAGCCCCATGACCACCTCACTTACCTATCCTACAATGTCCTTGCCCTTGTCAAACTCCGACGTTTCGCCGAAGCCCTGGCAGAACTTGATTCTCTTGAAGATCTCAATAGCTCTCAATACAGGTATGAATCGTACCCTAGCGTGTACCCTAATCGAACCGGCTCCATGGTCCCCTTTTCACTTCGGTGGCTGCAAGCGCTAATCCCCATCAAAATGGGCGAGCGTCAACATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAATTGAAGGATAAAGAGGAGAAAAAGCTCGATGTCTCTGTGAACTTGTGGAAGAAAAGGGTAGTGTTTGTGATTAATTGTATTATTGGCCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACCTTGATTAATAATTTGTTAAGTGAGGATTTCTCAGATCCTGCTCTGATTTCGAAACTTGGGTATATACAAATGCACGCTGGAGATATTGAAGGAGCTAAACGTTCGTTTAATCGGATTGAGGAGTTGGTTAAAGAGGGGAAAAGTAGTGGGTCGTTAAGCGAAGTAGAGATGAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGCAAGGACTATCTATCAGCTGTGAGGGAATATGAGGAGTGTATTGAGAGGGATAATTCGGACATGGTGGCTATTAACAATAAGGCTCTTTGCTTGATGTACTTGCGGGATTTAGCAGATTCGATTAAGGTGCTTGAAAATGCACTGGAAAGAGTTCCGACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTATGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCTCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTAGAATTTAA

Protein sequence

METESPSPSPDSHSHSTSDPETLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI

Homology

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BLAST of CsaV3_6G045650 vs. NCBI nr
Match: XP_004143481.1 (PREDICTED: trafficking protein particle complex subunit 12 [Cucumis sativus] >KGN48770.1 hypothetical protein Csa_6G500620 [Cucumis sativus])

HSP 1 Score: 718.4 bits (1853), Expect = 1.3e-203
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK
Sbjct: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL
Sbjct: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201
           RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG
Sbjct: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201

Query: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261
           HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK
Sbjct: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261

Query: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321
           SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR
Sbjct: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321

Query: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381
           DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD
Sbjct: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381

Query: 382 SSSTRI 388
           SSSTRI
Sbjct: 382 SSSTRI 387

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BLAST of CsaV3_6G045650 vs. NCBI nr
Match: XP_016899300.1 (PREDICTED: trafficking protein particle complex subunit 12 [Cucumis melo])

HSP 1 Score: 700.7 bits (1807), Expect = 2.9e-198
Identity = 358/366 (97.81%), Postives = 360/366 (98.36%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TLTTG ENL ISSDPLTTQFGSLNDLAHDL SLQDLATRGSWRSILDKVARARAL+LLQK
Sbjct: 22  TLTTGIENLTISSDPLTTQFGSLNDLAHDLSSLQDLATRGSWRSILDKVARARALSLLQK 81

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL
Sbjct: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201
           RWL ALIPIKMGERQ GLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKR VFVINCIIG
Sbjct: 142 RWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKREVFVINCIIG 201

Query: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261
           HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK
Sbjct: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261

Query: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321
           SSGSLSEVE+KNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR
Sbjct: 262 SSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321

Query: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381
           DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD
Sbjct: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381

Query: 382 SSSTRI 388
           SSSTRI
Sbjct: 382 SSSTRI 387

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BLAST of CsaV3_6G045650 vs. NCBI nr
Match: XP_022133008.1 (trafficking protein particle complex subunit 12 [Momordica charantia])

HSP 1 Score: 641.3 bits (1653), Expect = 2.1e-180
Identity = 322/366 (87.98%), Postives = 348/366 (95.08%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TL++G E L ISSDPLT +F SLN+LAH+L SLQD A+RGSWRSI DKV+RAR+L+LLQK
Sbjct: 18  TLSSGIEELTISSDPLTCKFSSLNNLAHELSSLQDHASRGSWRSITDKVSRARSLSLLQK 77

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLS+NVLALVKLRRF EALAELDSLEDL+SSQYRYESYPSVYPNRTGSMVPFSL
Sbjct: 78  PHDHLTYLSFNVLALVKLRRFVEALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVPFSL 137

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201
           RWL AL+PIKMGERQ GLDRFYELLDFVQSKL+DKE K+LD SVNLWKKR VFV NCIIG
Sbjct: 138 RWLHALLPIKMGERQEGLDRFYELLDFVQSKLEDKETKRLDASVNLWKKREVFVTNCIIG 197

Query: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261
           +HLSNKEF VCL+LI+NLLS DFSDPALISKLGYIQMH GDI+GAKRSFNRIEE+VKEGK
Sbjct: 198 YHLSNKEFSVCLSLIDNLLSRDFSDPALISKLGYIQMHVGDIDGAKRSFNRIEEMVKEGK 257

Query: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321
           SSGSLSEVE+KNLVNRNKALVF+VGKDYLSAVREYEECIERD++D+VAINNKALCLMYLR
Sbjct: 258 SSGSLSEVEIKNLVNRNKALVFMVGKDYLSAVREYEECIERDHTDVVAINNKALCLMYLR 317

Query: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381
           DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHS+IKRTLN+WIARVAPDDFD
Sbjct: 318 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSDIKRTLNSWIARVAPDDFD 377

Query: 382 SSSTRI 388
           SSSTRI
Sbjct: 378 SSSTRI 383

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BLAST of CsaV3_6G045650 vs. NCBI nr
Match: XP_022962944.1 (trafficking protein particle complex subunit 12 [Cucurbita moschata])

HSP 1 Score: 624.8 bits (1610), Expect = 2.0e-175
Identity = 317/366 (86.61%), Postives = 337/366 (92.08%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TLT+  E L ISSDPLT++F S               TRGSWRSILDKVARAR+L+LLQK
Sbjct: 20  TLTSAIEGLTISSDPLTSKFSSXXXXXXXXXXXXXXXTRGSWRSILDKVARARSLSLLQK 79

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLSYNVLALVKLRRFAE LAELDSLEDL+SSQYRYE+YPSVYPNRTGSMVPFSL
Sbjct: 80  PHDHLTYLSYNVLALVKLRRFAEGLAELDSLEDLDSSQYRYETYPSVYPNRTGSMVPFSL 139

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201
           RWL ALIPIKMGERQ GLDRFYELLDFVQSK+KDK+EK LDVSV+LWKKR VFVINCI+G
Sbjct: 140 RWLHALIPIKMGERQEGLDRFYELLDFVQSKVKDKQEKNLDVSVDLWKKREVFVINCIMG 199

Query: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261
           HHLSNKEFGVCL+LI+NLLS DFSDPALISKLGYIQMH GDIEGAKRSFN+IE++VKEGK
Sbjct: 200 HHLSNKEFGVCLSLIDNLLSRDFSDPALISKLGYIQMHVGDIEGAKRSFNKIEDMVKEGK 259

Query: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321
           SS SLSEVE+KNLVNRNKALVFLVGKDYLSAVREYEECIERD++D+VAINNKALCLMYLR
Sbjct: 260 SSVSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDHTDVVAINNKALCLMYLR 319

Query: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381
           DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD
Sbjct: 320 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 379

Query: 382 SSSTRI 388
           SS TRI
Sbjct: 380 SSCTRI 385

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BLAST of CsaV3_6G045650 vs. NCBI nr
Match: XP_023518819.1 (trafficking protein particle complex subunit 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 622.5 bits (1604), Expect = 9.9e-175
Identity = 316/366 (86.34%), Postives = 336/366 (91.80%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TLT+  E L ISSDPLT++F S               TRGSWRSILDKVARAR+L+LLQK
Sbjct: 20  TLTSAIEELTISSDPLTSKFSSXXXXXXXXXXXXXXXTRGSWRSILDKVARARSLSLLQK 79

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLSYNVLALVKLRRFAE LAELDSLEDL+SSQYRYE+YPSVYPNRTGSMVPFSL
Sbjct: 80  PHDHLTYLSYNVLALVKLRRFAEGLAELDSLEDLDSSQYRYETYPSVYPNRTGSMVPFSL 139

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201
           RWL ALIPIKMGERQ GLDR YELLDFVQSK+KDK+EK LDVSV+LWKKR VFVINCI+G
Sbjct: 140 RWLHALIPIKMGERQEGLDRLYELLDFVQSKVKDKQEKNLDVSVDLWKKREVFVINCIMG 199

Query: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261
           HHLSNKEFGVCL+LI+NLLS DFSDPALISKLGYIQMH GDIEGAKRSFN+IE++VKEGK
Sbjct: 200 HHLSNKEFGVCLSLIDNLLSRDFSDPALISKLGYIQMHVGDIEGAKRSFNKIEDMVKEGK 259

Query: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321
           SS SLSEVE+KNLVNRNKALVFLVGKDYLSAVREYEECIERD++D+VAINNKALCLMYLR
Sbjct: 260 SSVSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDHTDVVAINNKALCLMYLR 319

Query: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381
           DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD
Sbjct: 320 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 379

Query: 382 SSSTRI 388
           SS TRI
Sbjct: 380 SSCTRI 385

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BLAST of CsaV3_6G045650 vs. TAIR10
Match: AT4G39820.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 490.0 bits (1260), Expect = 1.4e-138
Identity = 230/348 (66.09%), Postives = 295/348 (84.77%), Query Frame = 0


Query: 40  QFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKL 99
           +F SL++L HDL SL +L+TRGSW++IL+K+++ARAL LL KPH+HLTYL+Y V+AL KL
Sbjct: 61  RFNSLDELTHDLGSLHELSTRGSWQAILEKISQARALFLLTKPHEHLTYLTYQVMALAKL 120

Query: 100 RRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGL 159
           RR  EA  EL+SL D + + YRYES+P +YPNR GSMVPFSLRWL ALIP K+G RQ GL
Sbjct: 121 RRSDEASHELNSLHDFDGTHYRYESFPEIYPNRRGSMVPFSLRWLYALIPTKLGNRQEGL 180

Query: 160 DRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNL 219
           DR Y LLDFV+ ++++KE + L+ SV LWKKR  FV+NC++G HL +KEFGV L L+  L
Sbjct: 181 DRLYVLLDFVRDRIREKESQSLESSVELWKKRETFVMNCLLGFHLGHKEFGVSLDLMKEL 240

Query: 220 LSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNK 279
           ++ D  DP LISKLG +QM  GD+EGAK +F+R+E+++ EGKS+G L+E++  NLV RNK
Sbjct: 241 INRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNLVGRNK 300

Query: 280 ALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPT 339
           ALV++V KDY+SAVREY++CIERDNSD++A+NNKALCLMYLRDL+D+IKV+E+ALERVPT
Sbjct: 301 ALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAIKVMESALERVPT 360

Query: 340 VALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
            ALNE+++VNLCSMYELAYVNH+++KRTLNNWIARVAPDDFDSS TR+
Sbjct: 361 AALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTRV 408

[Close]

BLAST of CsaV3_6G045650 vs. Swiss-Prot
Match: sp|Q8WVT3|TPC12_HUMAN (Trafficking protein particle complex subunit 12 OS=Homo sapiens OX=9606 GN=TRAPPC12 PE=1 SV=3)

HSP 1 Score: 132.9 bits (333), Expect = 7.8e-30
Identity = 99/357 (27.73%), Postives = 171/357 (47.90%), Query Frame = 0


Query: 54  LQDLATRGSWRSILDKVAR---------ARALTLLQKPHDHLTYLSYNVLALVKLRRFAE 113
           L+ L +  +WR+ +D   R          ++  L     D L      +  LVKL  F  
Sbjct: 384 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQN 443

Query: 114 ALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFYE 173
           A  E +   +L+     YE YP VYP R GSMVPFS+R L A +   +G  Q  LDR ++
Sbjct: 444 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 503

Query: 174 LLDFVQSKLKDKE-------------EKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGV 233
           +       L + E             ++    S+ LW+ R+  V+  +    L  K++ +
Sbjct: 504 VKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVL 563

Query: 234 CLTLINNLLS-EDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSGSLSEVE 293
            +   ++++      +P L+S +G I +  GDI+ A++ F  +E++ ++      L  ++
Sbjct: 564 AVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK------LDGLQ 623

Query: 294 MKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVL 353
            K +V  N A + L   ++  A R + E +  D  + VA NN A+CL+YL  L DS++ L
Sbjct: 624 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQL 683

Query: 354 ENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           E  +++ P   L+E+V+ NL +MYEL      + K+ L   +A    D F++   ++
Sbjct: 684 EAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQALLEAVAGKEGDSFNTQCLKL 734

[Close]

BLAST of CsaV3_6G045650 vs. Swiss-Prot
Match: sp|Q8K2L8|TPC12_MOUSE (Trafficking protein particle complex subunit 12 OS=Mus musculus OX=10090 GN=Trappc12 PE=1 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 1.7e-29
Identity = 95/321 (29.60%), Postives = 160/321 (49.84%), Query Frame = 0


Query: 84  DHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRW 143
           D L      +  LVKL  F  A  E +   +L+     YE YP VYP R GSMVPFS+R 
Sbjct: 485 DSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRI 544

Query: 144 LQALIPIKMGERQHGLDRFYELLDFVQSKLKDKE-------------EKKLDVSVNLWKK 203
           L A +   +G  Q  LDR + +       L + E             ++    SV LW+ 
Sbjct: 545 LHAELQQYLGNPQESLDRLHRVKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRS 604

Query: 204 RVVFVINCIIGHHLSNKEFGVC----LTLINNLLSEDFSDPALISKLGYIQMHAGDIEGA 263
           R+  V+  +    L  K++ +     LT+I     +   +P L+S +G I +  GDI+ A
Sbjct: 605 RLGRVLYSMANCLLLMKDYVLAVDAYLTVIKYYPEQ---EPQLLSGIGRILLQIGDIKTA 664

Query: 264 KRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSD 323
           ++ F  +E++ ++      L  ++ K +V  N+A ++L   ++  A + + E +  D ++
Sbjct: 665 EKYFQDVEKVTQK------LDGLQGKIMVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTN 724

Query: 324 MVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKR 383
            VA NN A+CL+YL  L DS++ LE  +++ P   L+E+V+ NL +MYEL      + K+
Sbjct: 725 AVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQ 784

Query: 384 TLNNWIARVAPDDFDSSSTRI 388
           +L   +A    D F++   ++
Sbjct: 785 SLLEAVASKEGDSFNTQCLKL 796

[Close]

BLAST of CsaV3_6G045650 vs. TrEMBL
Match: tr|A0A0A0KGA7|A0A0A0KGA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500620 PE=4 SV=1)

HSP 1 Score: 718.4 bits (1853), Expect = 8.7e-204
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK
Sbjct: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL
Sbjct: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201
           RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG
Sbjct: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201

Query: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261
           HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK
Sbjct: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261

Query: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321
           SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR
Sbjct: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321

Query: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381
           DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD
Sbjct: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381

Query: 382 SSSTRI 388
           SSSTRI
Sbjct: 382 SSSTRI 387

[Close]

BLAST of CsaV3_6G045650 vs. TrEMBL
Match: tr|A0A1S4DUA2|A0A1S4DUA2_CUCME (trafficking protein particle complex subunit 12 OS=Cucumis melo OX=3656 GN=LOC103484996 PE=4 SV=1)

HSP 1 Score: 700.7 bits (1807), Expect = 1.9e-198
Identity = 358/366 (97.81%), Postives = 360/366 (98.36%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TLTTG ENL ISSDPLTTQFGSLNDLAHDL SLQDLATRGSWRSILDKVARARAL+LLQK
Sbjct: 22  TLTTGIENLTISSDPLTTQFGSLNDLAHDLSSLQDLATRGSWRSILDKVARARALSLLQK 81

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL
Sbjct: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIG 201
           RWL ALIPIKMGERQ GLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKR VFVINCIIG
Sbjct: 142 RWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKREVFVINCIIG 201

Query: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261
           HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK
Sbjct: 202 HHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK 261

Query: 262 SSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321
           SSGSLSEVE+KNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR
Sbjct: 262 SSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLR 321

Query: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381
           DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD
Sbjct: 322 DLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFD 381

Query: 382 SSSTRI 388
           SSSTRI
Sbjct: 382 SSSTRI 387

[Close]

BLAST of CsaV3_6G045650 vs. TrEMBL
Match: tr|A0A2P5CW65|A0A2P5CW65_PARAD (N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_118070 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 7.5e-155
Identity = 282/369 (76.42%), Postives = 323/369 (87.53%), Query Frame = 0


Query: 22  TLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQK 81
           TLTT  E L +S+DPLT QFGSLN+L+H+L SLQDLA RGSWRS+LDKV RARAL+LLQK
Sbjct: 18  TLTTDLETLTLSNDPLTDQFGSLNNLSHELASLQDLALRGSWRSVLDKVGRARALSLLQK 77

Query: 82  PHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSL 141
           PHDHLTYLSYNVLAL+KLRRFAEA AELDSLEDL+ SQYRYESYP+VY NRTGSMVPFSL
Sbjct: 78  PHDHLTYLSYNVLALMKLRRFAEASAELDSLEDLDGSQYRYESYPNVYLNRTGSMVPFSL 137

Query: 142 RWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEK-KLDVSVNLWKKRVVFVINCII 201
           RWL+A++P K+G RQ GLDR Y LL FV++K+++KE    L VSV+ W+KR  FV N II
Sbjct: 138 RWLRAIVPAKLGRRQDGLDRLYGLLGFVRTKVEEKENAGDLGVSVSAWRKREFFVTNSII 197

Query: 202 GHHLSNKEFGVCLTLINNLLSED-FSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKE 261
           G HLSNKEF VCL+LI  L   D  SDP LISKLGYIQM  GD+EGAK SFNR+E L+KE
Sbjct: 198 GLHLSNKEFPVCLSLIKELFKRDGSSDPVLISKLGYIQMQIGDLEGAKSSFNRVEGLMKE 257

Query: 262 G-KSSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLM 321
           G KS GSLSE++ +NLVNRNKALV+LVGKDY+SAVREY+ECIERD++D+VA+NNKALCLM
Sbjct: 258 GEKSCGSLSEIQFRNLVNRNKALVYLVGKDYVSAVREYDECIERDHTDVVAVNNKALCLM 317

Query: 322 YLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPD 381
           YLRDL+DSIKVLENALERVPTVALNET++VNLCSMYELAYVNHS++KRTL+NWI RVAPD
Sbjct: 318 YLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDVKRTLSNWIVRVAPD 377

Query: 382 DFDSSSTRI 388
           DFDSS TRI
Sbjct: 378 DFDSSCTRI 386

[Close]

BLAST of CsaV3_6G045650 vs. TrEMBL
Match: tr|A0A2P5DH01|A0A2P5DH01_9ROSA (N-terminal acetyltransferase A, auxiliary subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_251370 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 3.3e-150
Identity = 273/353 (77.34%), Postives = 313/353 (88.67%), Query Frame = 0


Query: 40  QFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKL 99
           QFGSLNDL+H+L SLQDLA RGSWRS+LDKV RARAL+LLQKPHDHLTYLSYNVLAL+KL
Sbjct: 36  QFGSLNDLSHELASLQDLALRGSWRSVLDKVGRARALSLLQKPHDHLTYLSYNVLALMKL 95

Query: 100 RRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGL 159
           RRFAEA AELDSLEDL+ SQYRYESYP+VYPNRTGSMVPFSLRWL+A++P K+G RQ GL
Sbjct: 96  RRFAEASAELDSLEDLDGSQYRYESYPNVYPNRTGSMVPFSLRWLRAIVPAKLGRRQDGL 155

Query: 160 DRFYELLDFVQSKLKDKEEKK---LDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLI 219
           DR Y LL FV++K+++KE++    L VSV+ W+KR  FV N IIG HLSNKEF VCL+LI
Sbjct: 156 DRLYGLLGFVRTKVEEKEKENAGDLGVSVSAWRKREFFVTNSIIGLHLSNKEFPVCLSLI 215

Query: 220 NNLLSED-FSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEG-KSSGSLSEVEMKNL 279
             L   D  SDP LISKLGY+QM  GD+EGAK SFNR+E L+KEG KS GSLS ++ +NL
Sbjct: 216 KELFKRDGSSDPVLISKLGYVQMQIGDLEGAKSSFNRVEGLMKEGEKSCGSLSGIQFRNL 275

Query: 280 VNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVLENAL 339
           VNRNKALV+LVGKDY+SAVREY+ECIERD++D+VA+NNKALCLMYLRDL+DSIKVLENAL
Sbjct: 276 VNRNKALVYLVGKDYVSAVREYDECIERDHTDVVAVNNKALCLMYLRDLSDSIKVLENAL 335

Query: 340 ERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           ERVPTVALNET++VNLCSMYELAYVNHS+IKRTL+NWIARVAPDDFDSS TRI
Sbjct: 336 ERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDSSCTRI 388

[Close]

BLAST of CsaV3_6G045650 vs. TrEMBL
Match: tr|A0A061DJR3|A0A061DJR3_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_001171 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 2.1e-149
Identity = 263/357 (73.67%), Postives = 309/357 (86.55%), Query Frame = 0


Query: 33  SSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLTYLSYN 92
           ++DPLT QFGSLNDLAH+L SLQDLATRGSWRSILDKV+RAR+L LL  PHDHL Y+SYN
Sbjct: 7   TTDPLTNQFGSLNDLAHELASLQDLATRGSWRSILDKVSRARSLNLLTNPHDHLIYVSYN 66

Query: 93  VLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQALIPIKM 152
           VLAL KLRRF +A  ELDSL D NS  Y+YE+YP VYPNR+GSMVPFSLR++ A +PIK+
Sbjct: 67  VLALSKLRRFTDAANELDSLHDFNSHHYQYETYPQVYPNRSGSMVPFSLRFIHAQLPIKL 126

Query: 153 GERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNKEFGVC 212
           G RQ GLDRFY LL+F++ K+K KE   L+ SV +WKKR  FV+NCIIGHHL  KEF VC
Sbjct: 127 GNRQEGLDRFYLLLNFIRQKIKQKERDNLEESVKIWKKRENFVLNCIIGHHLGAKEFNVC 186

Query: 213 LTLINNLLSEDFSDPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGKSSG--SLSEVE 272
           L LI +L++ D+SDP L+SKLGYIQM  GD+EGAK SF+ +E ++ EGK+ G   LSEVE
Sbjct: 187 LDLIKDLINHDYSDPFLVSKLGYIQMQIGDLEGAKGSFHLVETMLNEGKNGGYSFLSEVE 246

Query: 273 MKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLADSIKVL 332
            +NLVNRNKALV+LVGKDY+SAVREYEECIERD++D+VAINNKALCLMYLRDL+DSIKVL
Sbjct: 247 FRNLVNRNKALVYLVGKDYVSAVREYEECIERDHADVVAINNKALCLMYLRDLSDSIKVL 306

Query: 333 ENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           ENALERVPT+ALNET+++NLCSMYELAYVNHSEIKRTL+NWIARVAPDDFD+S TR+
Sbjct: 307 ENALERVPTMALNETLVINLCSMYELAYVNHSEIKRTLSNWIARVAPDDFDASCTRV 363

The following BLAST results are available for this feature:

BLAST of CsaV3_6G045650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143481.1	1.3e-203	100.00	PREDICTED: trafficking protein particle complex subunit 12 [Cucumis sativus] >KG...	[more]
XP_016899300.1	2.9e-198	97.81	PREDICTED: trafficking protein particle complex subunit 12 [Cucumis melo]	[more]
XP_022133008.1	2.1e-180	87.98	trafficking protein particle complex subunit 12 [Momordica charantia]	[more]
XP_022962944.1	2.0e-175	86.61	trafficking protein particle complex subunit 12 [Cucurbita moschata]	[more]
XP_023518819.1	9.9e-175	86.34	trafficking protein particle complex subunit 12 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G045650 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39820.1	1.4e-138	66.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_6G045650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8WVT3\|TPC12_HUMAN	7.8e-30	27.73	Trafficking protein particle complex subunit 12 OS=Homo sapiens OX=9606 GN=TRAPP...	[more]
sp\|Q8K2L8\|TPC12_MOUSE	1.7e-29	29.60	Trafficking protein particle complex subunit 12 OS=Mus musculus OX=10090 GN=Trap...	[more]

BLAST of CsaV3_6G045650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGA7\|A0A0A0KGA7_CUCSA	8.7e-204	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500620 PE=4 SV=1	[more]
tr\|A0A1S4DUA2\|A0A1S4DUA2_CUCME	1.9e-198	97.81	trafficking protein particle complex subunit 12 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P5CW65\|A0A2P5CW65_PARAD	7.5e-155	76.42	N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=34...	[more]
tr\|A0A2P5DH01\|A0A2P5DH01_9ROSA	3.3e-150	77.34	N-terminal acetyltransferase A, auxiliary subunit OS=Trema orientalis OX=63057 G...	[more]
tr\|A0A061DJR3\|A0A061DJR3_THECC	2.1e-149	73.67	Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao OX=36...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf
IPR019734	TPR_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004180	carboxypeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G045650.1	CsaV3_6G045650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 159..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21581	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE	coord: 37..385
None	No IPR available	PANTHER	PTHR21581:SF6	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 12	coord: 37..385
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 307..340 e-value: 1.6 score: 17.7 coord: 227..260 e-value: 120.0 score: 5.6 coord: 273..306 e-value: 190.0 score: 3.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 202..371 e-value: 3.3E-13 score: 51.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 216..342
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 273..340 score: 9.193

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G045650	CSPI06G30430	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G045650	Cucsa.104580	Cucumber (Gy14) v1	cgycucB126
CsaV3_6G045650	CmaCh07G005280	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G045650	CmoCh07G005270	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G045650	Carg16009	Silver-seed gourd	carcucB0797
CsaV3_6G045650	Cla014163	Watermelon (97103) v1	cucwmB526
CsaV3_6G045650	MELO3C007776	Melon (DHL92) v3.5.1	cucmeB517
CsaV3_6G045650	ClCG01G018970	Watermelon (Charleston Gray)	cucwcgB455
CsaV3_6G045650	Lsi01G007450	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G045650	MELO3C007776.2	Melon (DHL92) v3.6.1	cucmedB505
CsaV3_6G045650	Cla97C01G018440	Watermelon (97103) v2	cucwmbB430
CsaV3_6G045650	Bhi03G000937	Wax gourd	cucwgoB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G045650	Silver-seed gourd	carcucB0442
CsaV3_6G045650	Silver-seed gourd	carcucB0987
CsaV3_6G045650	Cucurbita maxima (Rimu)	cmacucB0917
CsaV3_6G045650	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G045650	Cucurbita maxima (Rimu)	cmacucB0809
CsaV3_6G045650	Cucurbita moschata (Rifu)	cmocucB0793
CsaV3_6G045650	Cucurbita moschata (Rifu)	cmocucB0909
CsaV3_6G045650	Cucurbita pepo (Zucchini)	cpecucB0092
CsaV3_6G045650	Cucurbita pepo (Zucchini)	cpecucB0581
CsaV3_6G045650	Cucurbita pepo (Zucchini)	cpecucB0618