Cucsa.099440 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.099440
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionEukaryotic translation initiation factor 3 subunit A, putative
Locationscaffold00926 : 240764 .. 240954 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAGATGGTGGATGTTGCTTTATGCTCAATCACCAATCACAAATCTGATTTCCTTGTGCAAGTTGAAGATGTGCAAAAGTCTCTAAGGAAATTGGAGTCATGCATTTGCGACTTTGAAGAAGATCTCGAGAGTGTATATCGTCGTCTTGTAAAAAACAGAGTCTCTTTTCTTAACATCCTAAATCACTAA

mRNA sequence

TAGAGATGGTGGATGTTGCTTTATGCTCAATCACCAATCACAAATCTGATTTCCTTGTGCAAGTTGAAGATGTGCAAAAGTCTCTAAGGAAATTGGAGTCATGCATTTGCGACTTTGAAGAAGATCTCGAGAGTGTATATCGTCGTCTTGTAAAAAACAGAGTCTCTTTTCTTAACATCCTAAATCACTAA

Coding sequence (CDS)

TAGAGATGGTGGATGTTGCTTTATGCTCAATCACCAATCACAAATCTGATTTCCTTGTGCAAGTTGAAGATGTGCAAAAGTCTCTAAGGAAATTGGAGTCATGCATTTGCGACTTTGAAGAAGATCTCGAGAGTGTATATCGTCGTCTTGTAAAAAACAGAGTCTCTTTTCTTAACATCCTAAATCACTAA

Protein sequence

EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNILNH*
Homology
[Close]
BLAST of Cucsa.099440 vs. TrEMBL
Match: A0A0A0K1H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023920 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-17
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EMVD AL SITN KSD   Q EDVQ SLRKLE CI D EEDLES+YRRLVKNRVSFLNIL
Sbjct: 222 EMVDAALNSITNRKSDCFAQGEDVQNSLRKLELCIHDIEEDLESLYRRLVKNRVSFLNIL 281

Query: 61  NH 63
           NH
Sbjct: 282 NH 283

[Close]
BLAST of Cucsa.099440 vs. TrEMBL
Match: A0A0A0K2R6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G021920 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.3e-17
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EMVD AL SIT+HKSD +VQ+EDVQ  LRKLES I D EEDLES+YR L+KNRV+FLNIL
Sbjct: 223 EMVDAALYSITSHKSDCIVQIEDVQILLRKLESSIQDLEEDLESLYRHLIKNRVAFLNIL 282

Query: 61  NH 63
           NH
Sbjct: 283 NH 284

[Close]
BLAST of Cucsa.099440 vs. TrEMBL
Match: A0A0A0K2S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023930 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-09
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EMVD  L +I +H +D  V ++D    LRK+ES I D EEDLES+ R L+KNRVS LNIL
Sbjct: 224 EMVDATLSAIASHTTDKSVNLQD---QLRKIESSIRDLEEDLESLQRHLIKNRVSLLNIL 282

Query: 61  NH 63
           NH
Sbjct: 284 NH 282

[Close]
BLAST of Cucsa.099440 vs. TrEMBL
Match: A0A0A0K0T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023940 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-08
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EMV   L SI +H +D    ++D+   LRK ES I DFEEDLES+YR L+KNRVS LNIL
Sbjct: 226 EMVGATLNSIASHTTDKSFNLQDL---LRKSESSIQDFEEDLESLYRHLIKNRVSLLNIL 284

Query: 61  NH 63
           N+
Sbjct: 286 NN 284

[Close]
BLAST of Cucsa.099440 vs. TrEMBL
Match: A0A061DYK4_THECC (Eukaryotic translation initiation factor 3 subunit A, putative OS=Theobroma cacao GN=TCM_006496 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-08
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 4   DVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNILNH 63
           + +L S+   KSD ++Q+E+VQ  L+K ESCI DFEE LE ++R L+K RV+ LNILNH
Sbjct: 232 EASLLSLATSKSD-IMQIENVQNELQKSESCIQDFEEGLEGLFRCLIKVRVNILNILNH 289

[Close]
BLAST of Cucsa.099440 vs. TAIR10
Match: AT4G35710.1 (AT4G35710.1 Arabidopsis protein of unknown function (DUF241))

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 16  DFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNILNH 63
           DFL   +D+Q  L ++E CI  FE +LE ++RRL++ R S LNI++H
Sbjct: 238 DFLSH-DDLQNELEEVEMCIGGFERNLEGLFRRLIRTRASILNIISH 283

[Close]
BLAST of Cucsa.099440 vs. TAIR10
Match: AT2G17080.1 (AT2G17080.1 Arabidopsis protein of unknown function (DUF241))

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-06
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 

Query: 14  KSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNILNH 63
           +S+  ++++DVQ     LESCI D E+ LES+ + L+K RVSFLNIL H
Sbjct: 219 QSEKTLKMDDVQN----LESCIQDLEDGLESLSKSLIKYRVSFLNILGH 263

[Close]
BLAST of Cucsa.099440 vs. NCBI nr
Match: gi|659094088|ref|XP_008447876.1| (PREDICTED: uncharacterized protein LOC103490230 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-20
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EMVD AL SIT+HKSDFLVQVE+VQ SLRKLESCI DFE+DLES+YRRLVKNRVSFLNIL
Sbjct: 222 EMVDGALHSITDHKSDFLVQVENVQNSLRKLESCIRDFEDDLESLYRRLVKNRVSFLNIL 281

Query: 61  NH 63
           NH
Sbjct: 282 NH 283

[Close]
BLAST of Cucsa.099440 vs. NCBI nr
Match: gi|659094090|ref|XP_008447878.1| (PREDICTED: uncharacterized protein LOC103490231 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-19
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EM+DVAL  ITNHKSDFL +VEDVQ SLRKLESC+ +FEEDLES+YRRLVKNRVSFLNIL
Sbjct: 222 EMLDVALYQITNHKSDFLGRVEDVQNSLRKLESCVRNFEEDLESLYRRLVKNRVSFLNIL 281

Query: 61  NH 63
           N+
Sbjct: 282 NY 283

[Close]
BLAST of Cucsa.099440 vs. NCBI nr
Match: gi|659094523|ref|XP_008448107.1| (PREDICTED: uncharacterized protein LOC103490394 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-18
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EMVD +L SIT HKSDF VQVE+VQ SLRKLESCI D EEDLE++YR L+KNRVSFLNIL
Sbjct: 222 EMVDASLYSITGHKSDFFVQVEEVQNSLRKLESCIRDLEEDLENLYRCLIKNRVSFLNIL 281

Query: 61  NH 63
           NH
Sbjct: 282 NH 283

[Close]
BLAST of Cucsa.099440 vs. NCBI nr
Match: gi|659094080|ref|XP_008447872.1| (PREDICTED: uncharacterized protein LOC103490225 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-17
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           E+VD AL SITNHK DFL Q EDVQ SLRKLE CI D EEDL+S+YR L+KNRVSFLNIL
Sbjct: 221 EIVDAALNSITNHKFDFLAQGEDVQNSLRKLELCIHDIEEDLDSLYRHLIKNRVSFLNIL 280

Query: 61  NH 63
           NH
Sbjct: 281 NH 282

[Close]
BLAST of Cucsa.099440 vs. NCBI nr
Match: gi|778723198|ref|XP_004144940.2| (PREDICTED: uncharacterized protein LOC101211103 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-17
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 1   EMVDVALCSITNHKSDFLVQVEDVQKSLRKLESCICDFEEDLESVYRRLVKNRVSFLNIL 60
           EMVD AL SITN KSD   Q EDVQ SLRKLE CI D EEDLES+YRRLVKNRVSFLNIL
Sbjct: 222 EMVDAALNSITNRKSDCFAQGEDVQNSLRKLELCIHDIEEDLESLYRRLVKNRVSFLNIL 281

Query: 61  NH 63
           NH
Sbjct: 282 NH 283

The following BLAST results are available for this feature:
BLAST of Cucsa.099440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1H9_CUCSA1.9e-1780.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023920 PE=4 SV=1[more]
A0A0A0K2R6_CUCSA9.3e-1775.81Uncharacterized protein OS=Cucumis sativus GN=Csa_7G021920 PE=4 SV=1[more]
A0A0A0K2S2_CUCSA4.2e-0958.06Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023930 PE=4 SV=1[more]
A0A0A0K0T5_CUCSA2.7e-0858.06Uncharacterized protein OS=Cucumis sativus GN=Csa_7G023940 PE=4 SV=1[more]
A0A061DYK4_THECC7.9e-0854.24Eukaryotic translation initiation factor 3 subunit A, putative OS=Theobroma caca... [more]
BLAST of Cucsa.099440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35710.12.3e-0646.81 Arabidopsis protein of unknown function (DUF241)[more]
AT2G17080.13.9e-0651.02 Arabidopsis protein of unknown function (DUF241)[more]
BLAST of Cucsa.099440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094088|ref|XP_008447876.1|2.0e-2087.10PREDICTED: uncharacterized protein LOC103490230 [Cucumis melo][more]
gi|659094090|ref|XP_008447878.1|2.2e-1982.26PREDICTED: uncharacterized protein LOC103490231 [Cucumis melo][more]
gi|659094523|ref|XP_008448107.1|2.4e-1879.03PREDICTED: uncharacterized protein LOC103490394 [Cucumis melo][more]
gi|659094080|ref|XP_008447872.1|2.1e-1777.42PREDICTED: uncharacterized protein LOC103490225 [Cucumis melo][more]
gi|778723198|ref|XP_004144940.2|2.7e-1780.65PREDICTED: uncharacterized protein LOC101211103 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004320DUF241_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.099440.1Cucsa.099440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004320Protein of unknown function DUF241, plantPFAMPF03087DUF241coord: 1..59
score: 4.0
NoneNo IPR availablePANTHERPTHR31509FAMILY NOT NAMEDcoord: 1..62
score: 4.4
NoneNo IPR availablePANTHERPTHR31509:SF12SUBFAMILY NOT NAMEDcoord: 1..62
score: 4.4