Cucsa.088430 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.088430
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transcription initiation factor IIA subunit 2
Location	scaffold00888 : 741361 .. 745318 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAaGAGAAAAAAaGGAATGTAGAAAGCCCTAACAAAATTAATTCTCCCTCTCTTTTGCGTGGAACAGCCCCCACTTTGAACTTTCAGCCGGCCAAGAAATCCTCTCTCCGATGACGATTCGCAGCGACTACTAATGACCGAACCACTCTCCGGCATCCCATTTCTGCCTTCATCAACCACGCGAGATTCGTAGTTCCAGCGACGGCGGCGCTTACATCCTCCAGTGGCGGTGACCATCGACACCCTGGAAATCCACGCGGTCTGAACACCCTGGAAGCGACGCTTTCCTCCCTTTCGTCAAGGTTAGATACTTACCCATTGTTTCAAGGCTGGATTTAAGTTACCCACTTCTTAAGGGATCGTTATATACAGGTATTCGACCACCAACAAACACGGATTTGGGTTGTTTTGAGTAAAAATTAGCGGGTAAACACTCTAAATTTATTTTCTAACTAGTTCAAGGTTCGTTAGATTAGTTTCTAATTCTTGGAAGTCATTTTGTACGTTTGAAATAGTTTAGTAACTATTTTATCACCTTGCAGCAAGGACTCAAGTCTGTTGTCTTGTTGAGTTTtAGTAGTTAGAACTCCGTTTAGAGCCTTTTCAATTGAATTTGTGTAGATGTTTGAATATATGTATGATTAATGTTAGAGAACATAACACATAAGCATAAAACATATCATAGAGTTTAGAATGGAAAGTATTAGAATTATTGAGAATGTCGATGGCCCTTTGTGGAGTTAGTCAGTTAGGCCCACGTTGACTGAGAGATCGGTGGCCTTGGATAATATCAGTTGGAGCCGGAAAAGAGGTCGTTGGCCTTGGATATATCAGTTAGGGTCAATGGAGATCGTTGGTAGCGTTGGATGAAGTCAACAAAGTTGATGGAGAGTGTTGATGATAATGGATAAATCATGTCGGTGCGCCTGGGCACGATTAGCTGGGGTCAACGTGTTTGAGGTATTCATTCAGAATTTTTTGTGAGAGTTAAGCTGGAATGTTTACTGAAGTTGTATTAATTTTCTATTGGATCCCATTCAGAATTTTTTGTGCGAGTTAAGCTGGAATGTTTATTGAAGTTGTATTCATTTTCTATTGGATTCTGTCGTCACTTATCCAATAGGGAAACGACGACAATGGTTTCCTTTCTTTGCTCGATGAGTGTGACTTTTAGGAGGGATGTGTTTGGAAGCCCAATCCTTTGAAGGCTTCTCTTGTAAATCTTTCTTCAAATTGTTGTTAGGCCCCTCCCATGGTTGCATATTGGTTTTTGGCGCGGTTTGGAGGATAAAGATTCCACAGAAAATCTAGTTTTTTATCTAGCAGGTTTTGATAGGTTGCAAGAACACCTTGGATGGGCTTGCTAAGAAGATGCCTACGCTTATGGGACCGTCCTGTTGTATTCTTTTTTGGAAGGAAGAGGAAACCTTAACCACCTGCTTTGGGACTGTTAATATGTGAGGCTTGTGTGGTCTTGTTTCTTTCAGAAGTTTGGTTTCCAGATTGCTGGACAGAGAAAGATCTGTACCATGATCAAAAGGAGTATATCTTGTATCGTCCGCCTTTCAAAGAGAAAGGTCGGTTTTTGTTGCTTTCCAGAGTGTACGCCATAGTTTGGGGTTTTGGgGGTGAAAGGAACGAGAGAGTTTTTAGACTTTAGAGGTTTAGAGAAGGACCCTTCTATGTTTGGTCCTCGGTGAGGTTCCATATTTCTCTGTGGGATTCCATTGGTAACATTTTATTAAGTTGGAAGTCTTTCTTGTAGAAGGCTTGTTTTTtGATGGCCTGGTTTTGTTTGCTCTTGTATTCTTTTCATTCATTTTCAATGAAAGTTGACCATTTTTTTAAGAAAAAAAAAaGCAAAACTAGAGTTTCTATCTTAGCTAAAGAGCTTCAATATTTTGCAGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGGTATAGCCGAAGCTGTTAGGAGATGCGGTATACTTTTTATTTGTGTTTAGAATTTAGGTCTTGTTTGATTTAATTTGTTACTGCATTTGCAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGTATTTTtTTTtGGCTTGACAATCTTTAATGCTATAAATTTATGTTGCTAAATAAAGTCAACGTTATAAATTTGAAACATATTTTTACTGATAAGAGGAATCGGTTGTGTTTGCCTTGCTCGTAGATTTCTCTGTTTGTGCTCTAGTGCATGTCTAGAACTCGAGCCAAATTATTTTGTCAATAACACATTACACATTTATATGTCGAATGGTGAGAATGAGATGATCAATGTGGTACTTAAGTGACTTGGCTCTTCCACCCCAATAGCTGACTTTTGGTGTGTGGTTTCTCAAGGTGCTTAAGTACCAAACAATTGTATCACAGCTGGTTGTCAACGTTTTGGAGTAGAGTCGCCTGAGGGTGCTGACCATGTATGGCTGAGTGAAGTATTACTGGATTAGCCACTTGGATGTCGGCTTTTtGGGGACAAGGTATTGTTAGGAGCCAATGTAGTGTGGGGCGCCGTTGCCCCACATTGGTTAGAATAGTTGACCAATGTGATACTTAAGTGGCTTGACTCTTCCACCCAAAAGCCAGCTTTTGGGATGTAGTTCTCCAAGGTGCTTAAGTACCTAAAGTATAGTGGATATTCTCCCGGTCTTTTGGTTGCCATGTAGTGAATAGAACCATGATATAGGAATGAAACAGTGTACGGTATTAAACCATTTGTATTGAGAGATGGTAGTGTTTCTTTGGTGGAACTTTTGATTTCTAGGTGATTCGGTTGGTATTGTTCATTCTATTCCTTGCTTCGATGTTTCTTGATTTTAGAAATGTTTTTCCCTATGAAATATTGCTCCTTGGAAAAGTTTATCTGGAATAAACTTTGTAGTTCTGTGTTTTTGGAATCTGGGGACAAAGTCATCCCTGTTGTTAGAGAGGTGGCCATATCAGATTCTACAATGAGTCTTCGTGAGTCCACAGCTATTGCTTTCAAGTTCTATGTTCAATTCTATGGATGTTGGATTTTCTAACGATACTCAGTTGAAAGTTCATCACACACACACACACAGATTGTACGAGGACCATTGCTCTGAAAGAAATTATGAAATCATAATCACACAACAATGTTTTAGCAGTATAGTTAACGTATGCATGACATTTTGTTTGTCTTGAACACTTTCTTTCTGGTGATTTCTAAATTTCTTTGTCCTCGTACTGTCTTGTCATGCAACAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAaTAGTAGCATGTGACTCAAAGTTACTGTCACAGTAAGCTCTCATACATCAGGTTTATTCAATGAAATTTGCATAGTTATTTGCTGACGATGGAGCGAAGAACATTCACGGTGAGGAGGAAATGACCATCCAGGAAGAGATTCAAACGTGATTCTCTAAAGTCATCAACCCAAACAGCAAAAAGTTGCATTGACCATACATAGACTGTAACTGGCTTCTAAAGTTGATTGCATAACAATTACACGACCCGGCTTCTAGTTTAACGATAAAATAAAACATGATATGTGTTTCAATACTATGCTATTAATTTCCTTTGAATCTACTTTCTGTACATTAGAAGAATTCAAATTACCACTTCGAAAGGAATAAACTTCATTGGAACTGTTTTCTTATTATTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTGAATAATAAGAAAGAATCAAACATTTTCCACA

mRNA sequence

aaaaagagaaaaaaaggaaTGTAGAAAGCCCTAACAAAATTAATTCTCCCTCTCTTTTGCGTGGAACAGCCCCCACTTTGAACTTTCAGCCGGCCAAGAAATCCTCTCTCCGATGACGATTCGCAGCGACTACTAATGACCGAACCACTCTCCGGCATCCCATTTCTGCCTTCATCAACCACGCGAGATTCGTAGTTCCAGCGACGGCGGCGCTTACATCCTCCAGTGGCGGTGACCATCGACACCCTGGAAATCCACGCGGTCTGAACACCCTGGAAGCGACGCTTTCCTCCCTTTCGTCAAGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTGTCACAGTAAGCTCTCATACATCAGGTTTATTCAATGAAATTTGCATAGTTATTTGCTGACGATGGAGCGAAGAACATTCACGGTGAGGAGGAAATGACCATCCAGGAAGAGATTCAAACGTGATTCTCTAAAGTCATCAACCCAAACAGCAAAAAGTTGCATTGACCATACATAGACTGTAACTGGCTTCTAAAGTTGATTGCATAACAATTACACGACCCGGCTTCTAGTTTAACGATAAAATAAAACATGATATGTGTTTCAATACTATGCTATTAATTTCCTTTGAATCTACTTTCTGTACATTAGAAGAATTCAAATTACCACTTCGAAAGGAATAAACTTCATTGGAACTGTTTTCTTATTATTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTGAATAATAAGAAAGAATCAAACATTTTCCACA

Coding sequence (CDS)

ATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAaTAGTAGCATGTGACTCAAAGTTACTGTCACAGTAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ*

Homology

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BLAST of Cucsa.088430 vs. Swiss-Prot
Match: T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 4.5e-49
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Cucsa.088430 vs. Swiss-Prot
Match: T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48
Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Cucsa.088430 vs. Swiss-Prot
Match: T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48
Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Cucsa.088430 vs. Swiss-Prot
Match: T2AG_SCHPO (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=toa2 PE=3 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 8.3e-27
Identity = 53/99 (53.54%), Postives = 79/99 (79.80%), Query Frame = 1


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSK 103
            TYRFCD VWTFI+++ SF+ ++ +    +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]

BLAST of Cucsa.088430 vs. Swiss-Prot
Match: T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-25
Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDASFKNE-DSSENVGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E +    V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

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BLAST of Cucsa.088430 vs. TrEMBL
Match: A0A0A0LMF8_CUCSA (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Cucsa.088430 vs. TrEMBL
Match: A0A0A0LQ01_CUCSA (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401490 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Cucsa.088430 vs. TrEMBL
Match: A5AJ11_VITVI (Transcription initiation factor IIA subunit 2 OS=Vitis vinifera GN=VIT_18s0001g07830 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-50
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+S ENVGR+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEESQENVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Cucsa.088430 vs. TrEMBL
Match: V7B6T1_PHAVU (Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris GN=PHAVU_008G183300g PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-49
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDS ENVGR+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Cucsa.088430 vs. TrEMBL
Match: A0A0L9UXF2_PHAAN (Transcription initiation factor IIA subunit 2 OS=Phaseolus angularis GN=LR48_Vigan07g122400 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-49
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDS ENVGR+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Cucsa.088430 vs. TAIR10
Match: AT4G24440.1 (AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S))

HSP 1 Score: 194.9 bits (494), Expect = 2.5e-50
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Cucsa.088430 vs. NCBI nr
Match: gi|449441770|ref|XP_004138655.1| (PREDICTED: transcription initiation factor IIA subunit 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Cucsa.088430 vs. NCBI nr
Match: gi|659081192|ref|XP_008441202.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 6.3e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Cucsa.088430 vs. NCBI nr
Match: gi|225459042|ref|XP_002285630.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Vitis vinifera])

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+S ENVGR+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEESQENVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Cucsa.088430 vs. NCBI nr
Match: gi|302142093|emb|CBI19296.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 58  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 117

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+S ENVGR+KIVACDSKLL+Q
Sbjct: 118 GHLHTYRFCDNVWTFILQDALFKNEESQENVGRVKIVACDSKLLTQ 163

[Close]

BLAST of Cucsa.088430 vs. NCBI nr
Match: gi|449441772|ref|XP_004138656.1| (PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

The following BLAST results are available for this feature:

BLAST of Cucsa.088430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
T2AG_ARATH	4.5e-49	88.68	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S...	[more]
T2AG_ORYSJ	1.0e-48	87.74	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN...	[more]
T2AG_ORYSI	1.0e-48	87.74	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=T...	[more]
T2AG_SCHPO	8.3e-27	53.54	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
T2AG_DICDI	4.5e-25	55.45	Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf...	[more]

BLAST of Cucsa.088430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMF8_CUCSA	3.0e-52	100.00	Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401990...	[more]
A0A0A0LQ01_CUCSA	4.9e-50	96.23	Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401490...	[more]
A5AJ11_VITVI	4.9e-50	94.34	Transcription initiation factor IIA subunit 2 OS=Vitis vinifera GN=VIT_18s0001g0...	[more]
V7B6T1_PHAVU	1.1e-49	93.40	Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris GN=PHAVU_008...	[more]
A0A0L9UXF2_PHAAN	1.1e-49	93.40	Transcription initiation factor IIA subunit 2 OS=Phaseolus angularis GN=LR48_Vig...	[more]

BLAST of Cucsa.088430 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24440.1	2.5e-50	88.68	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA...	[more]

BLAST of Cucsa.088430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441770\|ref\|XP_004138655.1\|	4.4e-52	100.00	PREDICTED: transcription initiation factor IIA subunit 2 isoform X1 [Cucumis sat...	[more]
gi\|659081192\|ref\|XP_008441202.1\|	6.3e-51	97.17	PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo]	[more]
gi\|225459042\|ref\|XP_002285630.1\|	7.0e-50	94.34	PREDICTED: transcription initiation factor IIA subunit 2 [Vitis vinifera]	[more]
gi\|302142093\|emb\|CBI19296.3\|	7.0e-50	94.34	unnamed protein product [Vitis vinifera]	[more]
gi\|449441772\|ref\|XP_004138656.1\|	7.0e-50	96.23	PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003194	TFIIA_gsu
IPR009083	TFIIA_a-hlx
IPR009088	TFIIA_b-brl
IPR015871	TFIIA_gsu_C
IPR015872	TFIIA_gsu_N
IPR003194	TFIIA_gsu
IPR009083	TFIIA_a-hlx
IPR009088	TFIIA_b-brl
IPR015871	TFIIA_gsu_C
IPR015872	TFIIA_gsu_N
IPR003194	TFIIA_gsu
IPR009083	TFIIA_a-hlx
IPR009088	TFIIA_b-brl
IPR015871	TFIIA_gsu_C
IPR015872	TFIIA_gsu_N

Vocabulary: **Cellular Component**
Term	Definition
GO:0005672	transcription factor TFIIA complex
GO:0005672	transcription factor TFIIA complex
GO:0005672	transcription factor TFIIA complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006367	transcription initiation from RNA polymerase II promoter
GO:0006367	transcription initiation from RNA polymerase II promoter
GO:0006367	transcription initiation from RNA polymerase II promoter

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.088430.1	Cucsa.088430.1	mRNA
Cucsa.088430.2	Cucsa.088430.2	mRNA
Cucsa.088430.3	Cucsa.088430.3	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003194	Transcription initiation factor IIA, gamma subunit	PIR	PIRSF009415	TFIIA_gamma_hum	coord: 1..106 score: 1.5
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106 score: 9.5
IPR009083	Transcription factor IIA, helical	unknown	SSF47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..54 score: 1.36
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	G3DSA:2.30.18.10		coord: 55..103 score: 2.3
IPR009088	Transcription factor IIA, beta-barrel	unknown	SSF50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 52..102 score: 4.19
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 53..101 score: 6.8
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PRODOM	PD009224		coord: 1..50 score: 3.0
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	GENE3D	G3DSA:1.10.287.190		coord: 1..54 score: 2.3
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 4..49 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.088430	Csa2G401490	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.088430	MELO3C008105	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.088430	CSPI02G24830	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.088430	MELO3C008106.2	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.088430	CsaV3_2G033350	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.088430	Bhi04G002064	Wax gourd	cgywgoB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.088430	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.088430	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.088430	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.088430	Cucurbita moschata (Rifu)	cgycmoB0166
Cucsa.088430	Watermelon (Charleston Gray)	cgywcgB097
Cucsa.088430	Watermelon (97103) v1	cgywmB101
Cucsa.088430	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.088430	Cucurbita pepo (Zucchini)	cgycpeB0164
Cucsa.088430	Bottle gourd (USVL1VR-Ls)	cgylsiB098
Cucsa.088430	Silver-seed gourd	carcgyB0016
Cucsa.088430	Silver-seed gourd	carcgyB1196
Cucsa.088430	Watermelon (97103) v2	cgywmbB097