Cucsa.088430.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAaGAGAAAAAAaGGAATGTAGAAAGCCCTAACAAAATTAATTCTCCCTCTCTTTTGCGTGGAACAGCCCCCACTTTGAACTTTCAGCCGGCCAAGAAATCCTCTCTCCGATGACGATTCGCAGCGACTACTAATGACCGAACCACTCTCCGGCATCCCATTTCTGCCTTCATCAACCACGCGAGATTCGTAGTTCCAGCGACGGCGGCGCTTACATCCTCCAGTGGCGGTGACCATCGACACCCTGGAAATCCACGCGGTCTGAACACCCTGGAAGCGACGCTTTCCTCCCTTTCGTCAAGGTTAGATACTTACCCATTGTTTCAAGGCTGGATTTAAGTTACCCACTTCTTAAGGGATCGTTATATACAGGTATTCGACCACCAACAAACACGGATTTGGGTTGTTTTGAGTAAAAATTAGCGGGTAAACACTCTAAATTTATTTTCTAACTAGTTCAAGGTTCGTTAGATTAGTTTCTAATTCTTGGAAGTCATTTTGTACGTTTGAAATAGTTTAGTAACTATTTTATCACCTTGCAGCAAGGACTCAAGTCTGTTGTCTTGTTGAGTTTtAGTAGTTAGAACTCCGTTTAGAGCCTTTTCAATTGAATTTGTGTAGATGTTTGAATATATGTATGATTAATGTTAGAGAACATAACACATAAGCATAAAACATATCATAGAGTTTAGAATGGAAAGTATTAGAATTATTGAGAATGTCGATGGCCCTTTGTGGAGTTAGTCAGTTAGGCCCACGTTGACTGAGAGATCGGTGGCCTTGGATAATATCAGTTGGAGCCGGAAAAGAGGTCGTTGGCCTTGGATATATCAGTTAGGGTCAATGGAGATCGTTGGTAGCGTTGGATGAAGTCAACAAAGTTGATGGAGAGTGTTGATGATAATGGATAAATCATGTCGGTGCGCCTGGGCACGATTAGCTGGGGTCAACGTGTTTGAGGTATTCATTCAGAATTTTTTGTGAGAGTTAAGCTGGAATGTTTACTGAAGTTGTATTAATTTTCTATTGGATCCCATTCAGAATTTTTTGTGCGAGTTAAGCTGGAATGTTTATTGAAGTTGTATTCATTTTCTATTGGATTCTGTCGTCACTTATCCAATAGGGAAACGACGACAATGGTTTCCTTTCTTTGCTCGATGAGTGTGACTTTTAGGAGGGATGTGTTTGGAAGCCCAATCCTTTGAAGGCTTCTCTTGTAAATCTTTCTTCAAATTGTTGTTAGGCCCCTCCCATGGTTGCATATTGGTTTTTGGCGCGGTTTGGAGGATAAAGATTCCACAGAAAATCTAGTTTTTTATCTAGCAGGTTTTGATAGGTTGCAAGAACACCTTGGATGGGCTTGCTAAGAAGATGCCTACGCTTATGGGACCGTCCTGTTGTATTCTTTTTTGGAAGGAAGAGGAAACCTTAACCACCTGCTTTGGGACTGTTAATATGTGAGGCTTGTGTGGTCTTGTTTCTTTCAGAAGTTTGGTTTCCAGATTGCTGGACAGAGAAAGATCTGTACCATGATCAAAAGGAGTATATCTTGTATCGTCCGCCTTTCAAAGAGAAAGGTCGGTTTTTGTTGCTTTCCAGAGTGTACGCCATAGTTTGGGGTTTTGGgGGTGAAAGGAACGAGAGAGTTTTTAGACTTTAGAGGTTTAGAGAAGGACCCTTCTATGTTTGGTCCTCGGTGAGGTTCCATATTTCTCTGTGGGATTCCATTGGTAACATTTTATTAAGTTGGAAGTCTTTCTTGTAGAAGGCTTGTTTTTtGATGGCCTGGTTTTGTTTGCTCTTGTATTCTTTTCATTCATTTTCAATGAAAGTTGACCATTTTTTTAAGAAAAAAAAAaGCAAAACTAGAGTTTCTATCTTAGCTAAAGAGCTTCAATATTTTGCAGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGGTATAGCCGAAGCTGTTAGGAGATGCGGTATACTTTTTATTTGTGTTTAGAATTTAGGTCTTGTTTGATTTAATTTGTTACTGCATTTGCAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGTATTTTtTTTtGGCTTGACAATCTTTAATGCTATAAATTTATGTTGCTAAATAAAGTCAACGTTATAAATTTGAAACATATTTTTACTGATAAGAGGAATCGGTTGTGTTTGCCTTGCTCGTAGATTTCTCTGTTTGTGCTCTAGTGCATGTCTAGAACTCGAGCCAAATTATTTTGTCAATAACACATTACACATTTATATGTCGAATGGTGAGAATGAGATGATCAATGTGGTACTTAAGTGACTTGGCTCTTCCACCCCAATAGCTGACTTTTGGTGTGTGGTTTCTCAAGGTGCTTAAGTACCAAACAATTGTATCACAGCTGGTTGTCAACGTTTTGGAGTAGAGTCGCCTGAGGGTGCTGACCATGTATGGCTGAGTGAAGTATTACTGGATTAGCCACTTGGATGTCGGCTTTTtGGGGACAAGGTATTGTTAGGAGCCAATGTAGTGTGGGGCGCCGTTGCCCCACATTGGTTAGAATAGTTGACCAATGTGATACTTAAGTGGCTTGACTCTTCCACCCAAAAGCCAGCTTTTGGGATGTAGTTCTCCAAGGTGCTTAAGTACCTAAAGTATAGTGGATATTCTCCCGGTCTTTTGGTTGCCATGTAGTGAATAGAACCATGATATAGGAATGAAACAGTGTACGGTATTAAACCATTTGTATTGAGAGATGGTAGTGTTTCTTTGGTGGAACTTTTGATTTCTAGGTGATTCGGTTGGTATTGTTCATTCTATTCCTTGCTTCGATGTTTCTTGATTTTAGAAATGTTTTTCCCTATGAAATATTGCTCCTTGGAAAAGTTTATCTGGAATAAACTTTGTAGTTCTGTGTTTTTGGAATCTGGGGACAAAGTCATCCCTGTTGTTAGAGAGGTGGCCATATCAGATTCTACAATGAGTCTTCGTGAGTCCACAGCTATTGCTTTCAAGTTCTATGTTCAATTCTATGGATGTTGGATTTTCTAACGATACTCAGTTGAAAGTTCATCACACACACACACACAGATTGTACGAGGACCATTGCTCTGAAAGAAATTATGAAATCATAATCACACAACAATGTTTTAGCAGTATAGTTAACGTATGCATGACATTTTGTTTGTCTTGAACACTTTCTTTCTGGTGATTTCTAAATTTCTTTGTCCTCGTACTGTCTTGTCATGCAACAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAaTAGTAGCATGTGACTCAAAGTTACTGTCACAGTAAGCTCTCATACATCAGGTTTATTCAATGAAATTTGCATAGTTATTTGCTGACGATGGAGCGAAGAACATTCACGGTGAGGAGGAAATGACCATCCAGGAAGAGATTCAAACGTGATTCTCTAAAGTCATCAACCCAAACAGCAAAAAGTTGCATTGACCATACATAGACTGTAACTGGCTTCTAAAGTTGATTGCATAACAATTACACGACCCGGCTTCTAGTTTAACGATAAAATAAAACATGATATGTGTTTCAATACTATGCTATTAATTTCCTTTGAATCTACTTTCTGTACATTAGAAGAATTCAAATTACCACTTCGAAAGGAATAAACTTCATTGGAACTGTTTTCTTATTATTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTGAATAATAAGAAAGAATCAAACATTTTCCACA aaaaagagaaaaaaaggaaTGTAGAAAGCCCTAACAAAATTAATTCTCCCTCTCTTTTGCGTGGAACAGCCCCCACTTTGAACTTTCAGCCGGCCAAGAAATCCTCTCTCCGATGACGATTCGCAGCGACTACTAATGACCGAACCACTCTCCGGCATCCCATTTCTGCCTTCATCAACCACGCGAGATTCGTAGTTCCAGCGACGGCGGCGCTTACATCCTCCAGTGGCGGTGACCATCGACACCCTGGAAATCCACGCGGTCTGAACACCCTGGAAGCGACGCTTTCCTCCCTTTCGTCAAGGTATTCGACCACCAACAAACACGGATTTGGGTTGTTTTGAGTAAAAATTAGCGGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTGTCACAGTAAGCTCTCATACATCAGGTTTATTCAATGAAATTTGCATAGTTATTTGCTGACGATGGAGCGAAGAACATTCACGGTGAGGAGGAAATGACCATCCAGGAAGAGATTCAAACGTGATTCTCTAAAGTCATCAACCCAAACAGCAAAAAGTTGCATTGACCATACATAGACTGTAACTGGCTTCTAAAGTTGATTGCATAACAATTACACGACCCGGCTTCTAGTTTAACGATAAAATAAAACATGATATGTGTTTCAATACTATGCTATTAATTTCCTTTGAATCTACTTTCTGTACATTAGAAGAATTCAAATTACCACTTCGAAAGGAATAAACTTCATTGGAACTGTTTTCTTATTATTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTGAATAATAAGAAAGAATCAAACATTTTCCACA ATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAaTAGTAGCATGTGACTCAAAGTTACTGTCACAGTAA MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ*
BLAST of Cucsa.088430.2 vs. Swiss-Prot
Match: T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2) HSP 1 Score: 194.9 bits (494), Expect = 4.5e-49 Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. Swiss-Prot
Match: T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN=TFIIAy PE=3 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48 Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. Swiss-Prot
Match: T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=TFIIAy PE=3 SV=2) HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48 Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. Swiss-Prot
Match: T2AG_SCHPO (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=toa2 PE=3 SV=2) HSP 1 Score: 120.9 bits (302), Expect = 8.3e-27 Identity = 53/99 (53.54%), Postives = 79/99 (79.80%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. Swiss-Prot
Match: T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf2a2 PE=3 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 4.5e-25 Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. TrEMBL
Match: A0A0A0LMF8_CUCSA (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401990 PE=3 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 3.0e-52 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. TrEMBL
Match: A5AJ11_VITVI (Transcription initiation factor IIA subunit 2 OS=Vitis vinifera GN=VIT_18s0001g07830 PE=3 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 4.9e-50 Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. TrEMBL
Match: A0A0A0LQ01_CUCSA (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus GN=Csa_2G401490 PE=3 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 4.9e-50 Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. TrEMBL
Match: I1JH19_SOYBN (Transcription initiation factor IIA subunit 2 OS=Glycine max GN=GLYMA_02G216100 PE=3 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 1.1e-49 Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. TrEMBL
Match: A0A0B2QX53_GLYSO (Transcription initiation factor IIA subunit 2 OS=Glycine soja GN=glysoja_019479 PE=3 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 1.1e-49 Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. TAIR10
Match: AT4G24440.1 (AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)) HSP 1 Score: 194.9 bits (494), Expect = 2.5e-50 Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. NCBI nr
Match: gi|449441770|ref|XP_004138655.1| (PREDICTED: transcription initiation factor IIA subunit 2 isoform X1 [Cucumis sativus]) HSP 1 Score: 212.2 bits (539), Expect = 4.4e-52 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. NCBI nr
Match: gi|659081192|ref|XP_008441202.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo]) HSP 1 Score: 208.4 bits (529), Expect = 6.3e-51 Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. NCBI nr
Match: gi|225459042|ref|XP_002285630.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Vitis vinifera]) HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50 Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. NCBI nr
Match: gi|302142093|emb|CBI19296.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50 Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Cucsa.088430.2 vs. NCBI nr
Match: gi|449441772|ref|XP_004138656.1| (PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis sativus]) HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50 Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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