Cucsa.088150 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.088150
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00888 : 560825 .. 561292 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCCATACACGCTATGATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAAAATGAATCGCGAGAAGCTGAAGAAGGAAGAAGAACGAGAAAATACTAAGAAGAAGAGTACTGATTCGAGCCCTAACTACGATGCGAAGGAACAACGGTCCAGCTGGCTGTTGAGGAAAATGAAGATTCATCCAAGTAATAAACCCAATTCTAATAACTATGTTAAATGAATATTGTTCGTTAAAGCCGAGATATATGTTGTTCATCCTCAAATCAATGCTTCATCGATCATCCATCGTTTTGTTCTTCCTTCACTTCTTCTGTACTCTTGTTTTATTTTGTTCGTTATGTAAAGTTTAATTAATAGACCTAATCCAATTCAAGATTTCCTATGTATATGTATAATGGATATGTGTGGATTCTTTGTTTATGTGTAAAGCTAAGGGCTCTCGATTAGTAGCATATTGATG

mRNA sequence

GTCTCCATACACGCTATGATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAAAATGAATCGCGAGAAGCTGAAGAAGGAAGAAGAACGAGAAAATACTAAGAAGAAGAGTACTGATTCGAGCCCTAACTACGATGCGAAGGAACAACGGTCCAGCTGGCTGTTGAGGAAAATGAAGATTCATCCAAGTAATAAACCCAATTCTAATAACTATGTTAAATGAATATTGTTCGTTAAAGCCGAGATATATGTTGTTCATCCTCAAATCAATGCTTCATCGATCATCCATCGTTTTGTTCTTCCTTCACTTCTTCTGTACTCTTGTTTTATTTTGTTCGTTATGTAAAGTTTAATTAATAGACCTAATCCAATTCAAGATTTCCTATGTATATGTATAATGGATATGTGTGGATTCTTTGTTTATGTGTAAAGCTAAGGGCTCTCGATTAGTAGCATATTGATG

Coding sequence (CDS)

ATGATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAAAATGAATCGCGAGAAGCTGAAGAAGGAAGAAGAACGAGAAAATACTAAGAAGAAGAGTACTGATTCGAGCCCTAACTACGATGCGAAGGAACAACGGTCCAGCTGGCTGTTGAGGAAAATGAAGATTCATCCAAGTAATAAACCCAATTCTAATAACTATGTTAAATGA

Protein sequence

MMNNYSLAEAYVMGKMNREKLKKEEERENTKKKSTDSSPNYDAKEQRSSWLLRKMKIHPSNKPNSNNYVK*
Homology
[Close]
BLAST of Cucsa.088150 vs. TrEMBL
Match: E5GB38_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-26
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 1  MMNNYSLAEAYVMGKMNREKLKKEEERENTKKK----STDSSPNYDAKEQRSSWLLRKMK 60
          MMNNYSLAEAYVMGKMNREKLKKEEE ENTKKK    STDSSPNYDAK+Q SSWLLRKMK
Sbjct: 1  MMNNYSLAEAYVMGKMNREKLKKEEEGENTKKKMISTSTDSSPNYDAKKQGSSWLLRKMK 60

Query: 61 IHPSNKPNSNNYVK 71
          IHPSNK NSNN VK
Sbjct: 61 IHPSNKANSNNSVK 74

[Close]
BLAST of Cucsa.088150 vs. NCBI nr
Match: gi|307135807|gb|ADN33680.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 1  MMNNYSLAEAYVMGKMNREKLKKEEERENTKKK----STDSSPNYDAKEQRSSWLLRKMK 60
          MMNNYSLAEAYVMGKMNREKLKKEEE ENTKKK    STDSSPNYDAK+Q SSWLLRKMK
Sbjct: 1  MMNNYSLAEAYVMGKMNREKLKKEEEGENTKKKMISTSTDSSPNYDAKKQGSSWLLRKMK 60

Query: 61 IHPSNKPNSNNYVK 71
          IHPSNK NSNN VK
Sbjct: 61 IHPSNKANSNNSVK 74

The following BLAST results are available for this feature:
BLAST of Cucsa.088150 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GB38_CUCME1.1e-2687.84Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cucsa.088150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135807|gb|ADN33680.1|1.6e-2687.84hypothetical protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.088150.1Cucsa.088150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 13..33
scor