CSPI02G25150 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G25150
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 21481798 .. 21482007 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAAAATGAATCGCGAGAAGCTGAAGAAGGAAGAAGAACGAGAAAATACTAAGAAGAAGAGTACTGATTCGAGCCCTAACTACGATGCGAAGGAACAACGGTCCAGCTGGCTGTTGAGGAAAATAAAGATTCATCCAAGTAATAAACCCAATTCTAATAACTCTGTTAAA

mRNA sequence

ATGATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAAAATGAATCGCGAGAAGCTGAAGAAGGAAGAAGAACGAGAAAATACTAAGAAGAAGAGTACTGATTCGAGCCCTAACTACGATGCGAAGGAACAACGGTCCAGCTGGCTGTTGAGGAAAATAAAGATTCATCCAAGTAATAAACCCAATTCTAATAACTCTGTTAAA

Coding sequence (CDS)

ATGATGAATAACTACTCTCTTGCCGAAGCCTACGTAATGGGGAAAATGAATCGCGAGAAGCTGAAGAAGGAAGAAGAACGAGAAAATACTAAGAAGAAGAGTACTGATTCGAGCCCTAACTACGATGCGAAGGAACAACGGTCCAGCTGGCTGTTGAGGAAAATAAAGATTCATCCAAGTAATAAACCCAATTCTAATAACTCTGTTAAA
Homology
[Close]
BLAST of CSPI02G25150 vs. TrEMBL
Match: E5GB38_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.7e-24
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 1  MMNNYSLAEAYVMGKMNREKLKKEEERENTKKK----STDSSPNYDAKEQRSSWLLRKIK 60
          MMNNYSLAEAYVMGKMNREKLKKEEE ENTKKK    STDSSPNYDAK+Q SSWLLRK+K
Sbjct: 1  MMNNYSLAEAYVMGKMNREKLKKEEEGENTKKKMISTSTDSSPNYDAKKQGSSWLLRKMK 60

Query: 61 IHPSNKPNSNNSVK 71
          IHPSNK NSNNSVK
Sbjct: 61 IHPSNKANSNNSVK 74

[Close]
BLAST of CSPI02G25150 vs. NCBI nr
Match: gi|307135807|gb|ADN33680.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 1  MMNNYSLAEAYVMGKMNREKLKKEEERENTKKK----STDSSPNYDAKEQRSSWLLRKIK 60
          MMNNYSLAEAYVMGKMNREKLKKEEE ENTKKK    STDSSPNYDAK+Q SSWLLRK+K
Sbjct: 1  MMNNYSLAEAYVMGKMNREKLKKEEEGENTKKKMISTSTDSSPNYDAKKQGSSWLLRKMK 60

Query: 61 IHPSNKPNSNNSVK 71
          IHPSNK NSNNSVK
Sbjct: 61 IHPSNKANSNNSVK 74

The following BLAST results are available for this feature:
BLAST of CSPI02G25150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G25150 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GB38_CUCME8.7e-2487.84Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI02G25150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G25150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135807|gb|ADN33680.1|1.2e-2387.84hypothetical protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G25150.1CSPI02G25150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 13..33
scor