Cucsa.088090 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.088090
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Zinc finger protein, putative
Location	scaffold00888 : 510741 .. 511149 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAACTCTCATCTTAAGCTTTTTGGTTTCAGCATCTCAAAAGAGAATAAAACGGTTTCTAATTTTAAAGAGCCACCGCTGACGGTGGAGTCACCGGAATCAGAAAATTCCTTTCCTCCAAAGTTCGAGTGTCGATATTGCTGCAGACAATTTTCGAATTCGCAAGCTTTGGGAGGTCATCAAAACGCCCATAAAGAAGAGAGACAGCTTTTGAAGACGCCTCAAATCAAATATTTTCAACGTAATTACTTCACATCTCTGCGCGTGCAGAGCTGGCTGTCGTCGTCCTTCGCGCCGCCGCCTCCCCCAATGGTGGTGGATGCTCCTCTACCGCCTGTTGCGGGGCTTTACGCTACGTCACGGCCCGCGTTTTCCCAGGCAGGAGTAAGAGATGAAGATGTTTCCG

mRNA sequence

ATGTCCAACTCTCATCTTAAGCTTTTTGGTTTCAGCATCTCAAAAGAGAATAAAACGGTTTCTAATTTTAAAGAGCCACCGCTGACGGTGGAGTCACCGGAATCAGAAAATTCCTTTCCTCCAAAGTTCGAGTGTCGATATTGCTGCAGACAATTTTCGAATTCGCAAGCTTTGGGAGGTCATCAAAACGCCCATAAAGAAGAGAGACAGCTTTTGAAGACGCCTCAAATCAAATATTTTCAACGTAATTACTTCACATCTCTGCGCGTGCAGAGCTGGCTGTCGTCGTCCTTCGCGCCGCCGCCTCCCCCAATGGTGGTGGATGCTCCTCTACCGCCTGTTGCGGGGCTTTACGCTACGTCACGGCCCGCGTTTTCCCAGGCAGGAGTAAGAGATGAAGATGTTTCCG

Coding sequence (CDS)

ATGTCCAACTCTCATCTTAAGCTTTTTGGTTTCAGCATCTCAAAAGAGAATAAAACGGTTTCTAATTTTAAAGAGCCACCGCTGACGGTGGAGTCACCGGAATCAGAAAATTCCTTTCCTCCAAAGTTCGAGTGTCGATATTGCTGCAGACAATTTTCGAATTCGCAAGCTTTGGGAGGTCATCAAAACGCCCATAAAGAAGAGAGACAGCTTTTGAAGACGCCTCAAATCAAATATTTTCAACGTAATTACTTCACATCTCTGCGCGTGCAGAGCTGGCTGTCGTCGTCCTTCGCGCCGCCGCCTCCCCCAATGGTGGTGGATGCTCCTCTACCGCCTGTTGCGGGGCTTTACGCTACGTCACGGCCCGCGTTTTCCCAGGCAGGAGTAAGAGATGAAGATGTTTCCG

Protein sequence

MSNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGHQNAHKEERQLLKTPQIKYFQRNYFTSLRVQSWLSSSFAPPPPPMVVDAPLPPVAGLYATSRPAFSQAGVRDEDVSX

Homology

[Close]

BLAST of Cucsa.088090 vs. Swiss-Prot
Match: ZFP6_ARATH (Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1


Query: 4   SHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGHQN 63
           S LKLFG ++  E  +V N    P       SE+    K+EC+YCCR+F+NSQALGGHQN
Sbjct: 6   SSLKLFGINLL-ETTSVQNQSSEPRPGSGSGSESR---KYECQYCCREFANSQALGGHQN 65

Query: 64  AHKEERQLLKTPQI---KYFQRNYFTSLRVQSWLSSSFAPPPPPMVVDAPLPP 114
           AHK+ERQLLK  Q+   +   R++         L S+FA  P P ++  P PP
Sbjct: 66  AHKKERQLLKRAQMLATRGLPRHHNFHPHTNP-LLSAFA--PLPHLLSQPHPP 111

[Close]

BLAST of Cucsa.088090 vs. Swiss-Prot
Match: ZFP5_ARATH (Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 2  SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGH 61
          S+  +KLFGF +   ++T        ++  +  +  +   + EC+YC ++F+NSQALGGH
Sbjct: 19 SDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGH 78

Query: 62 QNAHKEERQLLKTPQIK 79
          QNAHK+ER   K  Q++
Sbjct: 79 QNAHKKERLKKKRLQLQ 95

[Close]

BLAST of Cucsa.088090 vs. Swiss-Prot
Match: GIS2_ARATH (Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1


Query: 6  LKLFGFSIS---KENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGHQ 65
          ++LFGF      +E+++  N+ E   +++    E     +F+C YC R F  SQALGGHQ
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEK----RFKCHYCFRNFPTSQALGGHQ 78

Query: 66 NAHKEERQLLK 74
          NAHK ERQ  K
Sbjct: 79 NAHKRERQQTK 85

[Close]

BLAST of Cucsa.088090 vs. Swiss-Prot
Match: GIS_ARATH (Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 34/83 (40.96%), Postives = 41/83 (49.40%), Query Frame = 1


Query: 16  ENKTVSNFKEPPLTVESPESENSFPP--KFECRYCCRQFSNSQALGGHQNAHKEERQLLK 75
           + K     +E   T ++    NS     +FEC YC R F  SQALGGHQNAHK ERQL K
Sbjct: 62  QTKNKEEEEEEDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAK 121

Query: 76  TPQIKYF---QRNYFTSLRVQSW 94
                YF     N ++     SW
Sbjct: 122 RGVSSYFYHPDNNPYSYRHYPSW 144

[Close]

BLAST of Cucsa.088090 vs. Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 10  GFSISKENKTVSNFKEPPLTV---ESPESENSFPPKFECRYCCRQFSNSQALGGHQNAHK 69
           G + S E   + +FK    +    +  + + + P  F C YC R+F +SQALGGHQNAHK
Sbjct: 32  GTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHK 91

Query: 70  EERQLLKTPQIKYFQRNYFTSLRVQSWLSSSFA 100
            ER L K        R  +  + + S  SS+FA
Sbjct: 92  RERTLAK--------RGQYYKMTLSSLPSSAFA 116

[Close]

BLAST of Cucsa.088090 vs. TrEMBL
Match: A0A0A0LQ31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404810 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1   MSNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGG 60
           +SNSHLKLFGFSISKENK VSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGG
Sbjct: 34  VSNSHLKLFGFSISKENKRVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGG 93

Query: 61  HQNAHKEERQLLKTPQIKYFQRNYF 86
           HQNAHKEERQLLKTPQIKYF+RNYF
Sbjct: 94  HQNAHKEERQLLKTPQIKYFRRNYF 118

[Close]

BLAST of Cucsa.088090 vs. TrEMBL
Match: B9H314_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s09710g PE=4 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-18
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPP----KFECRYCCRQFSNSQA 61
           +N+ LKLFGF IS+ N              S ESE +F      K+EC+YCCR+F+NSQA
Sbjct: 4   NNTTLKLFGFDISENNNPTVPLDSSKSPSGSQESETNFQSSEGRKYECQYCCREFANSQA 63

Query: 62  LGGHQNAHKEERQLLKTPQIKYFQRNYFTS-LRVQSWLSSSFAPPPPPMVVDAPLPPVAG 121
           LGGHQNAHK+ER+LLK  Q++  +     S + + + + S+F+PPPP ++  A +P  A 
Sbjct: 64  LGGHQNAHKKERRLLKRAQMQATRSLAAASYVTIPNSMFSTFSPPPPHLLDPAVVPMAAA 123

Query: 122 L--YATSRPAF 126
           +  +A S P F
Sbjct: 124 MQEHAHSSPWF 134

[Close]

BLAST of Cucsa.088090 vs. TrEMBL
Match: A0A067KMC9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13000 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGH 61
           +NS LKLFGF+I  EN T +N         SPES+     K+EC+YCCR+F+NSQALGGH
Sbjct: 16  TNSTLKLFGFNIL-ENNTDNNNISSKSPSGSPESDTE-TRKYECQYCCREFANSQALGGH 75

Query: 62  QNAHKEERQLLKTPQIKYFQRNYFTSLRVQSWLSSSFAPPP----PPMVVDAP 111
           QNAHK+ERQLLK  QI+   RN+  S  V + + S+F+P P    PP VV AP
Sbjct: 76  QNAHKKERQLLKRAQIQ-ASRNFAASY-VPNSMFSNFSPLPPHLLPPAVVPAP 124

[Close]

BLAST of Cucsa.088090 vs. TrEMBL
Match: A0A161X640_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007252 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.1e-17
Identity = 51/123 (41.46%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGH 61
           +N  +KLFGF++++E++ V + K P  + +S     +   K+EC+YCCR+F+NSQALGGH
Sbjct: 17  ANGRIKLFGFNVTEEDEEVDSTKTPSGSSDSGGVPPTDGRKYECQYCCREFANSQALGGH 76

Query: 62  QNAHKEERQLLKTPQIKYFQRNYFTSLRVQSWLSSSFAPPP------PPMVVDAPLPPVA 119
           QNAHK+ERQ LK  Q++   RN   S  +++ + S+FAPPP       PM++ +   P +
Sbjct: 77  QNAHKKERQQLKRAQMQ-ASRNAAVSY-MRNPMVSAFAPPPHLLAPSMPMILPSAAAPPS 136

[Close]

BLAST of Cucsa.088090 vs. TrEMBL
Match: A5BMV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03780 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGH 61
           +N  LK+FGF++S E++ V + K P  + ES     +   K+EC+YCCR+F+NSQALGGH
Sbjct: 15  TNGRLKIFGFNVS-EDEDVESSKTPSGSPESGGFPATGDRKYECQYCCREFANSQALGGH 74

Query: 62  QNAHKEERQLLKTPQIKYFQRNYFTSLRVQSWLSSSFAPPPPPMVVDAPLPPVAG 117
           QNAHK+ERQ LK  Q++   RN  TS  +++ + S+FAPPP  +    P+   AG
Sbjct: 75  QNAHKKERQQLKRAQMQ-ATRNAATSY-IRNPMISAFAPPPHLLAPAGPVVVPAG 126

[Close]

BLAST of Cucsa.088090 vs. TAIR10
Match: AT1G68360.1 (AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 6.8e-16
Identity = 53/144 (36.81%), Postives = 70/144 (48.61%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPP-------------------- 61
           + S LKLFGFS+  E        +  L+  SPE    FP                     
Sbjct: 11  TTSRLKLFGFSVDGEEDFSDQSVKTNLSSVSPE-RGEFPAGSSGRSGGGVRSRGGGGGGG 70

Query: 62  --KFECRYCCRQFSNSQALGGHQNAHKEERQLLKTPQIK-------YFQRNYFTSLRVQS 117
             K+EC+YCCR+F NSQALGGHQNAHK+ERQ LK  Q++        F      S  +++
Sbjct: 71  ERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAANFSNAGSASQFLRN 130

[Close]

BLAST of Cucsa.088090 vs. TAIR10
Match: AT1G67030.1 (AT1G67030.1 zinc finger protein 6)

HSP 1 Score: 77.4 bits (189), Expect = 7.6e-15
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1


Query: 4   SHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGHQN 63
           S LKLFG ++  E  +V N    P       SE+    K+EC+YCCR+F+NSQALGGHQN
Sbjct: 6   SSLKLFGINLL-ETTSVQNQSSEPRPGSGSGSESR---KYECQYCCREFANSQALGGHQN 65

Query: 64  AHKEERQLLKTPQI---KYFQRNYFTSLRVQSWLSSSFAPPPPPMVVDAPLPP 114
           AHK+ERQLLK  Q+   +   R++         L S+FA  P P ++  P PP
Sbjct: 66  AHKKERQLLKRAQMLATRGLPRHHNFHPHTNP-LLSAFA--PLPHLLSQPHPP 111

[Close]

BLAST of Cucsa.088090 vs. TAIR10
Match: AT1G10480.1 (AT1G10480.1 zinc finger protein 5)

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-10
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 2  SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGH 61
          S+  +KLFGF +   ++T        ++  +  +  +   + EC+YC ++F+NSQALGGH
Sbjct: 19 SDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGH 78

Query: 62 QNAHKEERQLLKTPQIK 79
          QNAHK+ER   K  Q++
Sbjct: 79 QNAHKKERLKKKRLQLQ 95

[Close]

BLAST of Cucsa.088090 vs. TAIR10
Match: AT5G06650.1 (AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1


Query: 6  LKLFGFSIS---KENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGHQ 65
          ++LFGF      +E+++  N+ E   +++    E     +F+C YC R F  SQALGGHQ
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNESIKDDNKEK----RFKCHYCFRNFPTSQALGGHQ 78

Query: 66 NAHKEERQLLK 74
          NAHK ERQ  K
Sbjct: 79 NAHKRERQQTK 85

[Close]

BLAST of Cucsa.088090 vs. TAIR10
Match: AT3G58070.1 (AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 34/83 (40.96%), Postives = 41/83 (49.40%), Query Frame = 1


Query: 16  ENKTVSNFKEPPLTVESPESENSFPP--KFECRYCCRQFSNSQALGGHQNAHKEERQLLK 75
           + K     +E   T ++    NS     +FEC YC R F  SQALGGHQNAHK ERQL K
Sbjct: 62  QTKNKEEEEEEDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAK 121

Query: 76  TPQIKYF---QRNYFTSLRVQSW 94
                YF     N ++     SW
Sbjct: 122 RGVSSYFYHPDNNPYSYRHYPSW 144

[Close]

BLAST of Cucsa.088090 vs. NCBI nr
Match: gi|778673065|ref|XP_011649919.1| (PREDICTED: zinc finger protein 8 isoform X1 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1   MSNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGG 60
           +SNSHLKLFGFSISKENK VSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGG
Sbjct: 34  VSNSHLKLFGFSISKENKRVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGG 93

Query: 61  HQNAHKEERQLLKTPQIKYFQRNYF 86
           HQNAHKEERQLLKTPQIKYF+RNYF
Sbjct: 94  HQNAHKEERQLLKTPQIKYFRRNYF 118

[Close]

BLAST of Cucsa.088090 vs. NCBI nr
Match: gi|720028981|ref|XP_010265079.1| (PREDICTED: zinc finger protein 6-like [Nelumbo nucifera])

HSP 1 Score: 99.4 bits (246), Expect = 5.3e-18
Identity = 61/129 (47.29%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGH 61
           +N  LKLFGF++S+E++ V + K P  + ES     +   KFEC+YCCR+F+NSQALGGH
Sbjct: 15  NNVRLKLFGFNVSEEDE-VDSSKTPSGSTESGSFPANDGRKFECQYCCREFANSQALGGH 74

Query: 62  QNAHKEERQLLKTPQIKYFQRNYFTSLRVQSWLSSSFAPPP------PPMVVDAPLPPVA 121
           QNAHK+ERQ LK  Q++   RN   S  V++ + S+FAPPP       P+VV A +P   
Sbjct: 75  QNAHKKERQQLKRAQMQ-AGRNSAASY-VRNPMISAFAPPPHLLAPAGPVVVPAGVPQSP 134

Query: 122 GLYATSRPA 125
                SRPA
Sbjct: 135 SWIYMSRPA 140

[Close]

BLAST of Cucsa.088090 vs. NCBI nr
Match: gi|566165781|ref|XP_002305826.2| (hypothetical protein POPTR_0004s09710g, partial [Populus trichocarpa])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPP----KFECRYCCRQFSNSQA 61
           +N+ LKLFGF IS+ N              S ESE +F      K+EC+YCCR+F+NSQA
Sbjct: 4   NNTTLKLFGFDISENNNPTVPLDSSKSPSGSQESETNFQSSEGRKYECQYCCREFANSQA 63

Query: 62  LGGHQNAHKEERQLLKTPQIKYFQRNYFTS-LRVQSWLSSSFAPPPPPMVVDAPLPPVAG 121
           LGGHQNAHK+ER+LLK  Q++  +     S + + + + S+F+PPPP ++  A +P  A 
Sbjct: 64  LGGHQNAHKKERRLLKRAQMQATRSLAAASYVTIPNSMFSTFSPPPPHLLDPAVVPMAAA 123

Query: 122 L--YATSRPAF 126
           +  +A S P F
Sbjct: 124 MQEHAHSSPWF 134

[Close]

BLAST of Cucsa.088090 vs. NCBI nr
Match: gi|802634534|ref|XP_012078046.1| (PREDICTED: zinc finger protein 6 [Jatropha curcas])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGGH 61
           +NS LKLFGF+I  EN T +N         SPES+     K+EC+YCCR+F+NSQALGGH
Sbjct: 16  TNSTLKLFGFNIL-ENNTDNNNISSKSPSGSPESDTE-TRKYECQYCCREFANSQALGGH 75

Query: 62  QNAHKEERQLLKTPQIKYFQRNYFTSLRVQSWLSSSFAPPP----PPMVVDAP 111
           QNAHK+ERQLLK  QI+   RN+  S  V + + S+F+P P    PP VV AP
Sbjct: 76  QNAHKKERQLLKRAQIQ-ASRNFAASY-VPNSMFSNFSPLPPHLLPPAVVPAP 124

[Close]

BLAST of Cucsa.088090 vs. NCBI nr
Match: gi|743876022|ref|XP_011035089.1| (PREDICTED: zinc finger protein 6-like [Populus euphratica])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 1


Query: 2   SNSHLKLFGFSISKENKTVSNFKEPPLTVESPESENSFPP----KFECRYCCRQFSNSQA 61
           +N+ LKLFGF IS+ N              S ESE +F      K+EC+YCCR+F+NSQA
Sbjct: 15  NNTTLKLFGFDISENNNPTVPLDSSKSPSGSQESETNFQSSEGRKYECQYCCREFANSQA 74

Query: 62  LGGHQNAHKEERQLLKTPQIKYFQRNYFTS-LRVQSWLSSSFAPPPPPMVVDAPLPPVAG 121
           LGGHQNAHK+ER+LLK  Q++  +     S + + + + S+F+ PPP ++  A +P  A 
Sbjct: 75  LGGHQNAHKKERRLLKRAQMQATRSLAADSYVTIPNSMFSTFSQPPPHLLDPAVVPVAAA 134

Query: 122 L--YATSRPAF 126
           +  +A S P F
Sbjct: 135 MQEHAHSSPWF 145

The following BLAST results are available for this feature:

BLAST of Cucsa.088090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZFP6_ARATH	1.3e-13	44.25	Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1	[more]
ZFP5_ARATH	1.7e-08	37.66	Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1	[more]
GIS2_ARATH	2.2e-08	42.25	Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1	[more]
GIS_ARATH	2.9e-08	40.96	Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1	[more]
ZFP1_ARATH	2.5e-07	36.56	Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1	[more]

BLAST of Cucsa.088090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ31_CUCSA	2.4e-41	96.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404810 PE=4 SV=1	[more]
B9H314_POPTR	8.2e-18	42.75	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s09710g P...	[more]
A0A067KMC9_JATCU	1.1e-17	53.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13000 PE=4 SV=1	[more]
A0A161X640_DAUCA	9.1e-17	41.46	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007252 PE=4 SV=1	[more]
A5BMV3_VITVI	1.5e-16	46.09	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03780 PE=4 SV=...	[more]

BLAST of Cucsa.088090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68360.1	6.8e-16	36.81	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G67030.1	7.6e-15	44.25	zinc finger protein 6	[more]
AT1G10480.1	9.6e-10	37.66	zinc finger protein 5	[more]
AT5G06650.1	1.3e-09	42.25	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G58070.1	1.6e-09	40.96	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Cucsa.088090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673065\|ref\|XP_011649919.1\|	3.4e-41	96.47	PREDICTED: zinc finger protein 8 isoform X1 [Cucumis sativus]	[more]
gi\|720028981\|ref\|XP_010265079.1\|	5.3e-18	47.29	PREDICTED: zinc finger protein 6-like [Nelumbo nucifera]	[more]
gi\|566165781\|ref\|XP_002305826.2\|	1.2e-17	42.75	hypothetical protein POPTR_0004s09710g, partial [Populus trichocarpa]	[more]
gi\|802634534\|ref\|XP_012078046.1\|	1.5e-17	53.10	PREDICTED: zinc finger protein 6 [Jatropha curcas]	[more]
gi\|743876022\|ref\|XP_011035089.1\|	1.3e-16	41.98	PREDICTED: zinc finger protein 6-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.088090.1	Cucsa.088090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 45..65 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 43..70 score: 1
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 42..70 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.088090	Cla011876	Watermelon (97103) v1	cgywmB101
Cucsa.088090	Csa2G404810	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.088090	ClCG11G007850	Watermelon (Charleston Gray)	cgywcgB097
Cucsa.088090	CSPI02G25240	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.088090	CmaCh15G000500	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.088090	CmoCh15G000510	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.088090	Lsi03G004380	Bottle gourd (USVL1VR-Ls)	cgylsiB098
Cucsa.088090	Cp4.1LG13g11400	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.088090	CsaV3_2G033740	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.088090	Cla97C11G215620	Watermelon (97103) v2	cgywmbB097
Cucsa.088090	Bhi04G002029	Wax gourd	cgywgoB111
Cucsa.088090	Carg22847	Silver-seed gourd	carcgyB1196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.088090	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.088090	Cucurbita moschata (Rifu)	cgycmoB0166
Cucsa.088090	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.088090	Cucurbita pepo (Zucchini)	cgycpeB0164
Cucsa.088090	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.088090	Silver-seed gourd	carcgyB0016