Cucsa.087940 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.087940
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionGlycine-rich family protein
Locationscaffold00888 : 420019 .. 420368 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCTCCAATTCCCCATGGAACAACTTCCCCACCATTTTCTGTTTCGACCAGGACCGCCGCAACACGAAGGAACTACCAGCCTTAGTCTTGGAAGCCGGGGGAGGAGCAGGAGTTGGGTGCGGCCTTGGAATCGGGTTCGGACTCGTGGGAGGGATCGGCCACGCCGGTGCCTCGCCCTGGAATCACCTTCACCTCGTATTTGGCCTGGGTGCCGGCTGTGGCGTTGGGTTAGGGCTTGGAATTGGGCAAGGCTTTGGATATGGCGTCTCCTTTCAATCTGTTGATTCTTATTTCTCTCATCTCATTTCTAACCCTAAACCTAAGCAGCCTTCCCTCATTCAATTTTGA

mRNA sequence

ATTCCTCCAATTCCCCATGGAACAACTTCCCCACCATTTTCTGTTTCGACCAGGACCGCCGCAACACGAAGGAACTACCAGCCTTAGTCTTGGAAGCCGGGGGAGGAGCAGGAGTTGGGTGCGGCCTTGGAATCGGGTTCGGACTCGTGGGAGGGATCGGCCACGCCGGTGCCTCGCCCTGGAATCACCTTCACCTCGTATTTGGCCTGGGTGCCGGCTGTGGCGTTGGGTTAGGGCTTGGAATTGGGCAAGGCTTTGGATATGGCGTCTCCTTTCAATCTGTTGATTCTTATTTCTCTCATCTCATTTCTAACCCTAAACCTAAGCAGCCTTCCCTCATTCAATTTTGA

Coding sequence (CDS)

ATTCCTCCAATTCCCCATGGAACAACTTCCCCACCATTTTCTGTTTCGACCAGGACCGCCGCAACACGAAGGAACTACCAGCCTTAGTCTTGGAAGCCGGGGGAGGAGCAGGAGTTGGGTGCGGCCTTGGAATCGGGTTCGGACTCGTGGGAGGGATCGGCCACGCCGGTGCCTCGCCCTGGAATCACCTTCACCTCGTATTTGGCCTGGGTGCCGGCTGTGGCGTTGGGTTAGGGCTTGGAATTGGGCAAGGCTTTGGATATGGCGTCTCCTTTCAATCTGTTGATTCTTATTTCTCTCATCTCATTTCTAACCCTAAACCTAAGCAGCCTTCCCTCATTCAATTTTGA

Protein sequence

SSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF*
Homology
[Close]
BLAST of Cucsa.087940 vs. Swiss-Prot
Match: TGD5_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana GN=TGD5 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 33 GGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQ 92
          G G GVGCG G+G+G        G  P N L +  G G GCGVGLGLG G G  +G  ++
Sbjct: 12 GFGFGVGCGFGVGWGF-------GGMPMNILGV--GAGGGCGVGLGLGWGFGTAFGSHYR 63

Query: 93 S 94
          S
Sbjct: 72 S 63

[Close]
BLAST of Cucsa.087940 vs. TrEMBL
Match: A0A0A0LSZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404970 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.2e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   SSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPW 60
           SSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPW
Sbjct: 5   SSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPW 64

Query: 61  NHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 116
           NHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF
Sbjct: 65  NHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 119

[Close]
BLAST of Cucsa.087940 vs. TrEMBL
Match: A0A061EP29_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019361 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1 

Query: 19  RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLG 78
           R + +++   VL  GGGAG+GCG+G+GFGLVGGIG+ G  PWNHL L FG+GAGCGVGLG
Sbjct: 34  RESRQKVEENVLGPGGGAGIGCGIGVGFGLVGGIGYGGW-PWNHLKLAFGVGAGCGVGLG 93

Query: 79  LGIGQGFGYGVSFQSVDSY 98
            G GQG GYG S +S++SY
Sbjct: 94  FGFGQGIGYGFSLESLESY 111

[Close]
BLAST of Cucsa.087940 vs. TrEMBL
Match: A0A0D2PPH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G057300 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-21
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 19  RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLG 78
           R + +++   VL  GGGAG+GCG+G+GFGLVGGIG+ G  PWNHL L FG+GAGCG+G G
Sbjct: 34  RESRQKVEENVLGPGGGAGIGCGVGVGFGLVGGIGYGGW-PWNHLKLAFGVGAGCGIGFG 93

Query: 79  LGIGQGFGYGVSFQSVDSYFS 100
            G GQG GYG S +S++S  S
Sbjct: 94  FGFGQGIGYGFSLESLESNLS 113

[Close]
BLAST of Cucsa.087940 vs. TrEMBL
Match: W9S8Y9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027090 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-20
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 1 

Query: 9   FPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFG 68
           FP     D+ R+  +E    VL  G GAG+GCG+G+GFGLVGG G  G   WNHL LV G
Sbjct: 33  FPVAEFLDRSRQRAQES---VLGPGAGAGIGCGVGLGFGLVGGFGFGGPQ-WNHLKLVLG 92

Query: 69  LGAGCGVGLGLGIGQGFGYGVSFQSVDSYFS 100
           +G GCGVGLG+G GQGFGYG S +S++S  S
Sbjct: 93  IGLGCGVGLGIGFGQGFGYGYSLESLESDLS 119

[Close]
BLAST of Cucsa.087940 vs. TrEMBL
Match: A0A0K9R2Z5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_119290 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.2e-19
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 15  FDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCG 74
           F  +RR      A +L  G GAGVGCG+G GFGLVGG G +G   WNH+HL FG G GCG
Sbjct: 45  FGTNRRKNGATEAFILGPGAGAGVGCGVGFGFGLVGGAGFSGGL-WNHMHLAFGFGYGCG 104

Query: 75  VGLGLGIGQGFGYGVSFQSVDS 97
            G GLG GQG GYG S++++ S
Sbjct: 105 AGAGLGFGQGLGYGSSWKTIKS 125

[Close]
BLAST of Cucsa.087940 vs. TAIR10
Match: AT1G66820.1 (AT1G66820.1 glycine-rich protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 36/105 (34.29%), Postives = 50/105 (47.62%), Query Frame = 1 

Query: 1   SSNSPWNNFPTIFCFDQD-------RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIG 60
           S+N  W+  P +     +       R     +    +  G G G+GCG GIG GL GG+G
Sbjct: 3   STNKLWSRKPDVKTGKSEFPVTRFLRTQIDNIKTTTVGPGIGGGIGCGAGIGIGLSGGLG 62

Query: 61  HAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYF 99
              +   +H ++V G G GCG+G G G G G G G SF  +   F
Sbjct: 63  IGASEGLDHSNVVLGFGIGCGIGFGFGYGFGVGGGYSFDDIKERF 107

[Close]
BLAST of Cucsa.087940 vs. TAIR10
Match: AT4G10330.1 (AT4G10330.1 glycine-rich protein)

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 1 

Query: 35  GAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSV 94
           G GVGCG G G GL+GG+G     P     L FGLG G G G+G+G G G G G ++   
Sbjct: 34  GLGVGCGFGFGAGLIGGVGFGPGVP----GLQFGLGFGAGCGIGVGFGYGVGRGAAYDHS 93

Query: 95  DSYFS 100
            SY++
Sbjct: 94  RSYYN 94

[Close]
BLAST of Cucsa.087940 vs. TAIR10
Match: AT1G27695.1 (AT1G27695.1 glycine-rich protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 33 GGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQ 92
          G G GVGCG G+G+G        G  P N L +  G G GCGVGLGLG G G  +G  ++
Sbjct: 12 GFGFGVGCGFGVGWGF-------GGMPMNILGV--GAGGGCGVGLGLGWGFGTAFGSHYR 63

Query: 93 S 94
          S
Sbjct: 72 S 63

[Close]
BLAST of Cucsa.087940 vs. NCBI nr
Match: gi|700208027|gb|KGN63146.1| (hypothetical protein Csa_2G404970 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   SSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPW 60
           SSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPW
Sbjct: 5   SSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPW 64

Query: 61  NHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 116
           NHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF
Sbjct: 65  NHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 119

[Close]
BLAST of Cucsa.087940 vs. NCBI nr
Match: gi|590652501|ref|XP_007033168.1| (Uncharacterized protein TCM_019361 [Theobroma cacao])

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1 

Query: 19  RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLG 78
           R + +++   VL  GGGAG+GCG+G+GFGLVGGIG+ G  PWNHL L FG+GAGCGVGLG
Sbjct: 34  RESRQKVEENVLGPGGGAGIGCGIGVGFGLVGGIGYGGW-PWNHLKLAFGVGAGCGVGLG 93

Query: 79  LGIGQGFGYGVSFQSVDSY 98
            G GQG GYG S +S++SY
Sbjct: 94  FGFGQGIGYGFSLESLESY 111

[Close]
BLAST of Cucsa.087940 vs. NCBI nr
Match: gi|823200808|ref|XP_012435339.1| (PREDICTED: uncharacterized protein LOC105761955 [Gossypium raimondii])

HSP 1 Score: 108.2 bits (269), Expect = 9.6e-21
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 19  RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLG 78
           R + +++   VL  GGGAG+GCG+G+GFGLVGGIG+ G  PWNHL L FG+GAGCG+G G
Sbjct: 34  RESRQKVEENVLGPGGGAGIGCGVGVGFGLVGGIGYGGW-PWNHLKLAFGVGAGCGIGFG 93

Query: 79  LGIGQGFGYGVSFQSVDSYFS 100
            G GQG GYG S +S++S  S
Sbjct: 94  FGFGQGIGYGFSLESLESNLS 113

[Close]
BLAST of Cucsa.087940 vs. NCBI nr
Match: gi|703146813|ref|XP_010108896.1| (hypothetical protein L484_027090 [Morus notabilis])

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-20
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 1 

Query: 9   FPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFG 68
           FP     D+ R+  +E    VL  G GAG+GCG+G+GFGLVGG G  G   WNHL LV G
Sbjct: 33  FPVAEFLDRSRQRAQES---VLGPGAGAGIGCGVGLGFGLVGGFGFGGPQ-WNHLKLVLG 92

Query: 69  LGAGCGVGLGLGIGQGFGYGVSFQSVDSYFS 100
           +G GCGVGLG+G GQGFGYG S +S++S  S
Sbjct: 93  IGLGCGVGLGIGFGQGFGYGYSLESLESDLS 119

[Close]
BLAST of Cucsa.087940 vs. NCBI nr
Match: gi|731417682|ref|XP_010660389.1| (PREDICTED: keratin, type II cytoskeletal 60 kDa, component III isoform X2 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-20
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 21  NTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLG 80
           N K++    L  GGG G+GCG+G+GFG+ GG+G+ G S WNHL +VFG+G GCGVG+G G
Sbjct: 48  NLKKMEEAALGPGGGIGIGCGVGLGFGVTGGVGYGGGS-WNHLKMVFGIGMGCGVGVGFG 107

Query: 81  IGQGFGYGVSFQSVDSYFSH 101
            GQG G+G S +S+ S+FS+
Sbjct: 108 YGQGIGFGFSLESLQSHFSN 126

The following BLAST results are available for this feature:
BLAST of Cucsa.087940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TGD5_ARATH2.3e-0647.54Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana GN=... [more]
BLAST of Cucsa.087940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSZ2_CUCSA9.2e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404970 PE=4 SV=1[more]
A0A061EP29_THECC3.6e-2263.29Uncharacterized protein OS=Theobroma cacao GN=TCM_019361 PE=4 SV=1[more]
A0A0D2PPH7_GOSRA6.7e-2159.26Uncharacterized protein OS=Gossypium raimondii GN=B456_008G057300 PE=4 SV=1[more]
W9S8Y9_9ROSA3.3e-2056.04Uncharacterized protein OS=Morus notabilis GN=L484_027090 PE=4 SV=1[more]
A0A0K9R2Z5_SPIOL8.2e-1956.10Uncharacterized protein OS=Spinacia oleracea GN=SOVF_119290 PE=4 SV=1[more]
BLAST of Cucsa.087940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G66820.13.5e-1334.29 glycine-rich protein[more]
AT4G10330.19.6e-1146.15 glycine-rich protein[more]
AT1G27695.11.3e-0747.54 glycine-rich protein[more]
BLAST of Cucsa.087940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208027|gb|KGN63146.1|1.3e-62100.00hypothetical protein Csa_2G404970 [Cucumis sativus][more]
gi|590652501|ref|XP_007033168.1|5.1e-2263.29Uncharacterized protein TCM_019361 [Theobroma cacao][more]
gi|823200808|ref|XP_012435339.1|9.6e-2159.26PREDICTED: uncharacterized protein LOC105761955 [Gossypium raimondii][more]
gi|703146813|ref|XP_010108896.1|4.8e-2056.04hypothetical protein L484_027090 [Morus notabilis][more]
gi|731417682|ref|XP_010660389.1|6.2e-2055.00PREDICTED: keratin, type II cytoskeletal 60 kDa, component III isoform X2 [Vitis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.087940.1Cucsa.087940.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34201FAMILY NOT NAMEDcoord: 33..99
score: 3.0
NoneNo IPR availablePANTHERPTHR34201:SF2GLYCINE-RICH PROTEINcoord: 33..99
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.087940Csa2G404970Cucumber (Chinese Long) v2cgycuB090
Cucsa.087940CSPI02G25400Wild cucumber (PI 183967)cgycpiB093
Cucsa.087940MELO3C008164.2Melon (DHL92) v3.6.1cgymedB099
Cucsa.087940CsaV3_2G033920Cucumber (Chinese Long) v3cgycucB092
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.087940Silver-seed gourdcarcgyB0016
Cucsa.087940Silver-seed gourdcarcgyB1127
Cucsa.087940Watermelon (97103) v2cgywmbB097
Cucsa.087940Wax gourdcgywgoB111
Cucsa.087940Cucurbita maxima (Rimu)cgycmaB0168
Cucsa.087940Cucurbita maxima (Rimu)cgycmaB0171
Cucsa.087940Cucurbita moschata (Rifu)cgycmoB0163
Cucsa.087940Cucurbita moschata (Rifu)cgycmoB0166
Cucsa.087940Melon (DHL92) v3.5.1cgymeB100
Cucsa.087940Watermelon (Charleston Gray)cgywcgB097
Cucsa.087940Watermelon (97103) v1cgywmB101
Cucsa.087940Cucurbita pepo (Zucchini)cgycpeB0162
Cucsa.087940Cucurbita pepo (Zucchini)cgycpeB0164
Cucsa.087940Bottle gourd (USVL1VR-Ls)cgylsiB098