CSPI02G25400 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G25400
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Glycine-rich family protein
Location	Chr2 : 21622821 .. 21623481 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGTTTAGAATTTAAATTTGGAAGACATCCAACGGGAAGTGAGATTGGGCGATGGGATAAGAAATATGTGAAGAACAACAAACATAGAGTTCAAAATTCACATCTCTCTCTCTCACTCTCTCTTTTTCATCCTCTCACTATGAAATCAGACTCCTCCAATTCCCCATGGAACAACTTCCCCACCATTTTCAGTTTCGACCAGGATCGCCGCAACACAAAGGAACTACCAGCCTTAGTCTTGGAAGCCGGGGGAGGAGCAGGAGTTGGGTGCGGCCTTGGAATCGGGTTCGGACTCGTGGGAGGGATCGGCCACGCCGGTGCCTCGCCCTGGAATCACCTTCACCTCGTATTTGGCCTGGGTGCCGGCTGTGGCGTTGGGTTAGGGCTTGGAATTGGGCAAGGCTTTGGATATGGCGTCTCCTTTCAATCTGTTGATTCTTATTTCTCTCATCTCATTTCTAACCCTAAACCTAAGCAGCCTTCCCTCATTCAATTTTGAAATTTCCTCTCTTACCCATTTCCGTACCCTTTCATTTTTATCTTCTCCTTTCAGAATTTTTTTTTTGCATCTTTCAACATCTTTTTCGACTTCTTATTTCTCCATTTAATTTGTATGCATTAATTGCACATTCATTTTATTAATCCACCACTATCAAATTC

mRNA sequence

ATGAAATCAGACTCCTCCAATTCCCCATGGAACAACTTCCCCACCATTTTCAGTTTCGACCAGGATCGCCGCAACACAAAGGAACTACCAGCCTTAGTCTTGGAAGCCGGGGGAGGAGCAGGAGTTGGGTGCGGCCTTGGAATCGGGTTCGGACTCGTGGGAGGGATCGGCCACGCCGGTGCCTCGCCCTGGAATCACCTTCACCTCGTATTTGGCCTGGGTGCCGGCTGTGGCGTTGGGTTAGGGCTTGGAATTGGGCAAGGCTTTGGATATGGCGTCTCCTTTCAATCTGTTGATTCTTATTTCTCTCATCTCATTTCTAACCCTAAACCTAAGCAGCCTTCCCTCATTCAATTTTGA

Coding sequence (CDS)

ATGAAATCAGACTCCTCCAATTCCCCATGGAACAACTTCCCCACCATTTTCAGTTTCGACCAGGATCGCCGCAACACAAAGGAACTACCAGCCTTAGTCTTGGAAGCCGGGGGAGGAGCAGGAGTTGGGTGCGGCCTTGGAATCGGGTTCGGACTCGTGGGAGGGATCGGCCACGCCGGTGCCTCGCCCTGGAATCACCTTCACCTCGTATTTGGCCTGGGTGCCGGCTGTGGCGTTGGGTTAGGGCTTGGAATTGGGCAAGGCTTTGGATATGGCGTCTCCTTTCAATCTGTTGATTCTTATTTCTCTCATCTCATTTCTAACCCTAAACCTAAGCAGCCTTCCCTCATTCAATTTTGA

Homology

[Close]

BLAST of CSPI02G25400 vs. TrEMBL
Match: A0A0A0LSZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404970 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.0e-61
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   MKSDSSNSPWNNFPTIFSFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAG 60
           MKSDSSNSPWNNFPTIF FDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAG
Sbjct: 1   MKSDSSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAG 60

Query: 61  ASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 120
           ASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF
Sbjct: 61  ASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 119

[Close]

BLAST of CSPI02G25400 vs. TrEMBL
Match: A0A061EP29_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019361 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-19
Identity = 58/112 (51.79%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 2   KSDSSNSPWN------------NFPTIFSFDQDRRNTKELPALVLEAGGGAGVGCGLGIG 61
           KS  +NS W              FP      + R+  +E    VL  GGGAG+GCG+G+G
Sbjct: 4   KSKDTNSLWKWKGNMNKKKNGKQFPVSEFLRESRQKVEEN---VLGPGGGAGIGCGIGVG 63

Query: 62  FGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSY 102
           FGLVGGIG+ G  PWNHL L FG+GAGCGVGLG G GQG GYG S +S++SY
Sbjct: 64  FGLVGGIGY-GGWPWNHLKLAFGVGAGCGVGLGFGFGQGIGYGFSLESLESY 111

[Close]

BLAST of CSPI02G25400 vs. TrEMBL
Match: A0A0D2PPH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G057300 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-18
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 23  RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLG 82
           R + +++   VL  GGGAG+GCG+G+GFGLVGGIG+ G  PWNHL L FG+GAGCG+G G
Sbjct: 34  RESRQKVEENVLGPGGGAGIGCGVGVGFGLVGGIGYGGW-PWNHLKLAFGVGAGCGIGFG 93

Query: 83  LGIGQGFGYGVSFQSVDSYFS 104
            G GQG GYG S +S++S  S
Sbjct: 94  FGFGQGIGYGFSLESLESNLS 113

[Close]

BLAST of CSPI02G25400 vs. TrEMBL
Match: W9S8Y9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027090 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-17
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 2   KSDSSNSPWNNFPTIFSFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGA 61
           K +   +    FP     D+ R+  +E    VL  G GAG+GCG+G+GFGLVGG G  G 
Sbjct: 22  KLNKKRNSEKRFPVAEFLDRSRQRAQES---VLGPGAGAGIGCGVGLGFGLVGGFGFGGP 81

Query: 62  SPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFS 104
             WNHL LV G+G GCGVGLG+G GQGFGYG S +S++S  S
Sbjct: 82  Q-WNHLKLVLGIGLGCGVGLGIGFGQGFGYGYSLESLESDLS 119

[Close]

BLAST of CSPI02G25400 vs. TrEMBL
Match: B9P7A2_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0005s15120g PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 3   SDSSNSPWNNFPTIFSFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGAS 62
           +DS     N FP +  F QD    K++   +L  GGG G+GCG+G GFGLVGG+G+ G+ 
Sbjct: 23  NDSKRKNGNQFP-VPEFLQD--GYKKVEETILGPGGGVGIGCGIGAGFGLVGGLGY-GSW 82

Query: 63  PWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYF 103
           PWN+  LVFG+G GCGVG G G G G G+G S  S++SYF
Sbjct: 83  PWNNTKLVFGVGMGCGVGFGFGYGNGLGHGFSLDSLESYF 118

[Close]

BLAST of CSPI02G25400 vs. TAIR10
Match: AT1G66820.1 (AT1G66820.1 glycine-rich protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-10
Identity = 36/105 (34.29%), Postives = 51/105 (48.57%), Query Frame = 1


Query: 5   SSNSPWNNFPTIFSFDQD-------RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIG 64
           S+N  W+  P + +   +       R     +    +  G G G+GCG GIG GL GG+G
Sbjct: 3   STNKLWSRKPDVKTGKSEFPVTRFLRTQIDNIKTTTVGPGIGGGIGCGAGIGIGLSGGLG 62

Query: 65  HAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYF 103
              +   +H ++V G G GCG+G G G G G G G SF  +   F
Sbjct: 63  IGASEGLDHSNVVLGFGIGCGIGFGFGYGFGVGGGYSFDDIKERF 107

[Close]

BLAST of CSPI02G25400 vs. TAIR10
Match: AT4G10330.1 (AT4G10330.1 glycine-rich protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 39  GAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSV 98
           G GVGCG G G GL+GG+G     P     L FGLG G G G+G+G G G G G ++   
Sbjct: 34  GLGVGCGFGFGAGLIGGVGFGPGVP----GLQFGLGFGAGCGIGVGFGYGVGRGAAYDHS 93

Query: 99  DSYFS 104
            SY++
Sbjct: 94  RSYYN 94

[Close]

BLAST of CSPI02G25400 vs. NCBI nr
Match: gi|700208027|gb|KGN63146.1| (hypothetical protein Csa_2G404970 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 5.8e-61
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   MKSDSSNSPWNNFPTIFSFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAG 60
           MKSDSSNSPWNNFPTIF FDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAG
Sbjct: 1   MKSDSSNSPWNNFPTIFCFDQDRRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAG 60

Query: 61  ASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 120
           ASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF
Sbjct: 61  ASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSHLISNPKPKQPSLIQF 119

[Close]

BLAST of CSPI02G25400 vs. NCBI nr
Match: gi|590652501|ref|XP_007033168.1| (Uncharacterized protein TCM_019361 [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-19
Identity = 58/112 (51.79%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 2   KSDSSNSPWN------------NFPTIFSFDQDRRNTKELPALVLEAGGGAGVGCGLGIG 61
           KS  +NS W              FP      + R+  +E    VL  GGGAG+GCG+G+G
Sbjct: 4   KSKDTNSLWKWKGNMNKKKNGKQFPVSEFLRESRQKVEEN---VLGPGGGAGIGCGIGVG 63

Query: 62  FGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSY 102
           FGLVGGIG+ G  PWNHL L FG+GAGCGVGLG G GQG GYG S +S++SY
Sbjct: 64  FGLVGGIGY-GGWPWNHLKLAFGVGAGCGVGLGFGFGQGIGYGFSLESLESY 111

[Close]

BLAST of CSPI02G25400 vs. NCBI nr
Match: gi|823200808|ref|XP_012435339.1| (PREDICTED: uncharacterized protein LOC105761955 [Gossypium raimondii])

HSP 1 Score: 99.0 bits (245), Expect = 6.0e-18
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 23  RRNTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLG 82
           R + +++   VL  GGGAG+GCG+G+GFGLVGGIG+ G  PWNHL L FG+GAGCG+G G
Sbjct: 34  RESRQKVEENVLGPGGGAGIGCGVGVGFGLVGGIGYGGW-PWNHLKLAFGVGAGCGIGFG 93

Query: 83  LGIGQGFGYGVSFQSVDSYFS 104
            G GQG GYG S +S++S  S
Sbjct: 94  FGFGQGIGYGFSLESLESNLS 113

[Close]

BLAST of CSPI02G25400 vs. NCBI nr
Match: gi|731417680|ref|XP_010660388.1| (PREDICTED: keratin, type II cytoskeletal 60 kDa, component III isoform X1 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-17
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 25  NTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLG 84
           N K++    L  GGG G+GCG+G+GFG+ GG+G+ G S WNHL +VFG+G GCGVG+G G
Sbjct: 48  NLKKMEEAALGPGGGIGIGCGVGLGFGVTGGVGYGGGS-WNHLKMVFGIGMGCGVGVGFG 107

Query: 85  IGQGFGYGVSFQSVDSYFSH 105
            GQG G+G S +S+ S+FS+
Sbjct: 108 YGQGIGFGFSLESLQSHFSN 126

[Close]

BLAST of CSPI02G25400 vs. NCBI nr
Match: gi|731417682|ref|XP_010660389.1| (PREDICTED: keratin, type II cytoskeletal 60 kDa, component III isoform X2 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-17
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 25  NTKELPALVLEAGGGAGVGCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLG 84
           N K++    L  GGG G+GCG+G+GFG+ GG+G+ G S WNHL +VFG+G GCGVG+G G
Sbjct: 48  NLKKMEEAALGPGGGIGIGCGVGLGFGVTGGVGYGGGS-WNHLKMVFGIGMGCGVGVGFG 107

Query: 85  IGQGFGYGVSFQSVDSYFSH 105
            GQG G+G S +S+ S+FS+
Sbjct: 108 YGQGIGFGFSLESLQSHFSN 126

The following BLAST results are available for this feature:

BLAST of CSPI02G25400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G25400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ2_CUCSA	4.0e-61	99.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404970 PE=4 SV=1	[more]
A0A061EP29_THECC	3.8e-19	51.79	Uncharacterized protein OS=Theobroma cacao GN=TCM_019361 PE=4 SV=1	[more]
A0A0D2PPH7_GOSRA	4.2e-18	59.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G057300 PE=4 SV=1	[more]
W9S8Y9_9ROSA	6.1e-17	50.98	Uncharacterized protein OS=Morus notabilis GN=L484_027090 PE=4 SV=1	[more]
B9P7A2_POPTR	3.0e-16	51.00	Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0005s15120g PE=4 SV=...	[more]

BLAST of CSPI02G25400 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66820.1	2.9e-10	34.29	glycine-rich protein	[more]
AT4G10330.1	1.3e-07	46.15	glycine-rich protein	[more]

BLAST of CSPI02G25400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208027\|gb\|KGN63146.1\|	5.8e-61	99.16	hypothetical protein Csa_2G404970 [Cucumis sativus]	[more]
gi\|590652501\|ref\|XP_007033168.1\|	5.5e-19	51.79	Uncharacterized protein TCM_019361 [Theobroma cacao]	[more]
gi\|823200808\|ref\|XP_012435339.1\|	6.0e-18	59.26	PREDICTED: uncharacterized protein LOC105761955 [Gossypium raimondii]	[more]
gi\|731417680\|ref\|XP_010660388.1\|	5.1e-17	55.00	PREDICTED: keratin, type II cytoskeletal 60 kDa, component III isoform X1 [Vitis...	[more]
gi\|731417682\|ref\|XP_010660389.1\|	5.1e-17	55.00	PREDICTED: keratin, type II cytoskeletal 60 kDa, component III isoform X2 [Vitis...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G25400.1	CSPI02G25400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34201	FAMILY NOT NAMED	coord: 37..103 score: 3.0
None	No IPR available	PANTHER	PTHR34201:SF2	GLYCINE-RICH PROTEIN	coord: 37..103 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G25400	Csa2G404970	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G25400	MELO3C008164.2	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G25400	CsaV3_2G033920	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G25400	Cucsa.087940	Cucumber (Gy14) v1	cgycpiB093

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G25400	Watermelon (97103) v2	cpiwmbB106
CSPI02G25400	Wax gourd	cpiwgoB161
CSPI02G25400	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G25400	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G25400	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G25400	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G25400	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G25400	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G25400	Watermelon (97103) v1	cpiwmB167
CSPI02G25400	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G25400	Cucurbita pepo (Zucchini)	cpecpiB385
CSPI02G25400	Bottle gourd (USVL1VR-Ls)	cpilsiB113
CSPI02G25400	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G25400	Silver-seed gourd	carcpiB0018
CSPI02G25400	Silver-seed gourd	carcpiB1048