Cucsa.087810 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.087810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein of unknown function (DUF 3339)
Location	scaffold00888 : 335891 .. 336097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATTTAGCAGGTCCATTGATAGCATCGATATTGTTTGCGTTTCTATCACCAGGAATGATAATACAGATGCCTGGATCAGAAAAACCACTTGAATTCATGAACTTCAAGACAAGTTTTGCTTCCATTTTTGTTCATGCTGTTGTCTTTCTCCTCCTCCTTATTCTCTTCCTTGTTATGCTCAATCTCCATATTTACATCTAA

mRNA sequence

ATGAATGATTTAGCAGGTCCATTGATAGCATCGATATTGTTTGCGTTTCTATCACCAGGAATGATAATACAGATGCCTGGATCAGAAAAACCACTTGAATTCATGAACTTCAAGACAAGTTTTGCTTCCATTTTTGTTCATGCTGTTGTCTTTCTCCTCCTCCTTATTCTCTTCCTTGTTATGCTCAATCTCCATATTTACATCTAA

Coding sequence (CDS)

ATGAATGATTTAGCAGGTCCATTGATAGCATCGATATTGTTTGCGTTTCTATCACCAGGAATGATAATACAGATGCCTGGATCAGAAAAACCACTTGAATTCATGAACTTCAAGACAAGTTTTGCTTCCATTTTTGTTCATGCTGTTGTCTTTCTCCTCCTCCTTATTCTCTTCCTTGTTATGCTCAATCTCCATATTTACATCTAA

Protein sequence

MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLVMLNLHIYI*

Homology

[Close]

BLAST of Cucsa.087810 vs. TrEMBL
Match: A0A059APB1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01639 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-19
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          MND A PLIAS LFAFLSPGM++QMPG  +P++F+N KTS  SIFVHAV++ LLLILF V
Sbjct: 1  MNDWAAPLIASALFAFLSPGMVVQMPGKSQPVDFLNMKTSLPSIFVHAVLYGLLLILFFV 60

Query: 61 MLNLHIYI 69
          +LN+H+Y+
Sbjct: 61 VLNIHLYV 68

[Close]

BLAST of Cucsa.087810 vs. TrEMBL
Match: A9PBG8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09680g PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-18
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          MND A  LIA+ LFAFLSPG++ QMPG E+PL+FMN KTS A+IFVH V++ LLL+LFLV
Sbjct: 1  MNDWAASLIAAALFAFLSPGLVFQMPGKERPLDFMNMKTSLAAIFVHLVIYGLLLVLFLV 60

Query: 61 MLNLHIYI 69
          +L++H+Y+
Sbjct: 61 ILHVHLYV 68

[Close]

BLAST of Cucsa.087810 vs. TrEMBL
Match: A0A061EDX5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017236 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-18
Identity = 43/68 (63.24%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 1   MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
           MND A PLIA+ LFAFLSPG+++Q+PG  +P++FMN KTS A+IFVHAV++ L LILFLV
Sbjct: 67  MNDWAAPLIAAALFAFLSPGLVLQIPGKNQPIDFMNMKTSVAAIFVHAVLYALFLILFLV 126

Query: 61  MLNLHIYI 69
           +L++H+Y+
Sbjct: 127 VLHVHLYV 134

[Close]

BLAST of Cucsa.087810 vs. TrEMBL
Match: M5X8J0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb025443mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-18
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          M + A PLIAS LFAFLSPG++ QMPG E+P EFMN KTS ASIF+HAV++ LL+ILFLV
Sbjct: 1  MKNWAAPLIASGLFAFLSPGLVFQMPGKERPFEFMNMKTSVASIFLHAVIYGLLIILFLV 60

Query: 61 MLNLHIY 68
          +L++HIY
Sbjct: 61 ILDIHIY 67

[Close]

BLAST of Cucsa.087810 vs. TrEMBL
Match: D7MJ07_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_916123 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          M+D A PLIAS LFAFLSPG+I+Q PG E P+ FMN KT+ ASIFVH V++ L LILFLV
Sbjct: 1  MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLV 60

Query: 61 MLNLHIYI 69
          +LN+H+Y+
Sbjct: 61 VLNIHVYV 68

[Close]

BLAST of Cucsa.087810 vs. TAIR10
Match: AT5G40960.1 (AT5G40960.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-20
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          M+D A PLIAS LFAFLSPG+I+Q PG E P+ FMN KT+ ASIFVH V++ L LILFLV
Sbjct: 1  MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLV 60

Query: 61 MLNLHIY 68
          +LN+H+Y
Sbjct: 61 VLNVHVY 67

[Close]

BLAST of Cucsa.087810 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-12
Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          M+D    L+  ILF  L+PG++ Q+PG +K +EF NF+TS  S+ VH++++  L+ +FL+
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 MLNLHIYI 69
           L +HIYI
Sbjct: 61 ALKIHIYI 68

[Close]

BLAST of Cucsa.087810 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 67.0 bits (162), Expect = 5.2e-12
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          M D    LIA ILF  LSPG++ Q+P   + +EF N +TS ASI VHA++F  L+ +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 MLNLHIY 68
           +N+HIY
Sbjct: 61 AINVHIY 67

[Close]

BLAST of Cucsa.087810 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-10
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          M D    ++A ILF  L+PG++ Q+P   + +EF N +TS ASI VH ++F  L+ +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 MLNLHIY 68
           + LHIY
Sbjct: 61 AIRLHIY 67

[Close]

BLAST of Cucsa.087810 vs. TAIR10
Match: AT3G01950.1 (AT3G01950.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 59.7 bits (143), Expect = 8.2e-10
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 6  GPLIASILFAF-LSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLVMLNL 65
          GP++ S++F   LSPG++ Q+PG  K +EF  F+TS  SI +H ++F   + + L+ L++
Sbjct: 6  GPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIALHI 65

Query: 66 HIY 68
          HIY
Sbjct: 66 HIY 68

[Close]

BLAST of Cucsa.087810 vs. NCBI nr
Match: gi|449441704|ref|XP_004138622.1| (PREDICTED: uncharacterized protein LOC101212134 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 9.7e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV
Sbjct: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60

Query: 61 MLNLHIYI 69
          MLNLHIYI
Sbjct: 61 MLNLHIYI 68

[Close]

BLAST of Cucsa.087810 vs. NCBI nr
Match: gi|702464750|ref|XP_010028988.1| (PREDICTED: uncharacterized protein LOC104419132 [Eucalyptus grandis])

HSP 1 Score: 101.3 bits (251), Expect = 7.0e-19
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          MND A PLIAS LFAFLSPGM++QMPG  +P++F+N KTS  SIFVHAV++ LLLILF V
Sbjct: 1  MNDWAAPLIASALFAFLSPGMVVQMPGKSQPVDFLNMKTSLPSIFVHAVLYGLLLILFFV 60

Query: 61 MLNLHIYI 69
          +LN+H+Y+
Sbjct: 61 VLNIHLYV 68

[Close]

BLAST of Cucsa.087810 vs. NCBI nr
Match: gi|802539278|ref|XP_012070230.1| (PREDICTED: uncharacterized protein LOC105632455 [Jatropha curcas])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          MND A PLIA+ LFAFLSPG +IQ+PG E+PL+FMN KTS ASIFVH V++ LLLILF V
Sbjct: 1  MNDWAAPLIAAALFAFLSPGWVIQIPGKERPLDFMNMKTSIASIFVHTVIYGLLLILFFV 60

Query: 61 MLNLHIYI 69
          +L++H+YI
Sbjct: 61 VLHVHLYI 68

[Close]

BLAST of Cucsa.087810 vs. NCBI nr
Match: gi|694435511|ref|XP_009344918.1| (PREDICTED: uncharacterized protein LOC103936776 [Pyrus x bretschneideri])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          M D A PLIAS LFAFLSPG++ QMPG E+PLEFMN KT+ AS+F+HAV++ LLLILFL+
Sbjct: 1  MKDWAAPLIASALFAFLSPGLVFQMPGKERPLEFMNMKTNIASMFLHAVIYGLLLILFLI 60

Query: 61 MLNLHIY 68
          +L++HIY
Sbjct: 61 ILDIHIY 67

[Close]

BLAST of Cucsa.087810 vs. NCBI nr
Match: gi|566212455|ref|XP_006373210.1| (hypothetical protein POPTR_0017s09680g [Populus trichocarpa])

HSP 1 Score: 97.8 bits (242), Expect = 7.7e-18
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MNDLAGPLIASILFAFLSPGMIIQMPGSEKPLEFMNFKTSFASIFVHAVVFLLLLILFLV 60
          MND A  LIA+ LFAFLSPG++ QMPG E+PL+FMN KTS A+IFVH V++ LLL+LFLV
Sbjct: 1  MNDWAASLIAAALFAFLSPGLVFQMPGKERPLDFMNMKTSLAAIFVHLVIYGLLLVLFLV 60

Query: 61 MLNLHIYI 69
          +L++H+Y+
Sbjct: 61 ILHVHLYV 68

The following BLAST results are available for this feature:

BLAST of Cucsa.087810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059APB1_EUCGR	4.9e-19	67.65	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01639 PE=4 SV=1	[more]
A9PBG8_POPTR	5.4e-18	64.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09680g PE=2 SV=1	[more]
A0A061EDX5_THECC	5.4e-18	63.24	Uncharacterized protein OS=Theobroma cacao GN=TCM_017236 PE=4 SV=1	[more]
M5X8J0_PRUPE	7.0e-18	68.66	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb025443mg PE=4 SV=1	[more]
D7MJ07_ARALL	1.2e-17	66.18	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Cucsa.087810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40960.1	1.8e-20	67.16	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	1.8e-12	44.12	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	5.2e-12	47.76	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.2e-10	41.79	Protein of unknown function (DUF 3339)	[more]
AT3G01950.1	8.2e-10	41.27	Protein of unknown function (DUF 3339)	[more]

BLAST of Cucsa.087810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441704\|ref\|XP_004138622.1\|	9.7e-29	100.00	PREDICTED: uncharacterized protein LOC101212134 [Cucumis sativus]	[more]
gi\|702464750\|ref\|XP_010028988.1\|	7.0e-19	67.65	PREDICTED: uncharacterized protein LOC104419132 [Eucalyptus grandis]	[more]
gi\|802539278\|ref\|XP_012070230.1\|	1.2e-18	69.12	PREDICTED: uncharacterized protein LOC105632455 [Jatropha curcas]	[more]
gi\|694435511\|ref\|XP_009344918.1\|	1.2e-18	68.66	PREDICTED: uncharacterized protein LOC103936776 [Pyrus x bretschneideri]	[more]
gi\|566212455\|ref\|XP_006373210.1\|	7.7e-18	64.71	hypothetical protein POPTR_0017s09680g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031225	anchored component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.087810.1	Cucsa.087810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 1.6
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..68 score: 1.7
None	No IPR available	PANTHER	PTHR33128:SF6	SUBFAMILY NOT NAMED	coord: 1..68 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.087810	ClCG11G009450	Watermelon (Charleston Gray)	cgywcgB100

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.087810	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.087810	Cucurbita pepo (Zucchini)	cgycpeB0164
Cucsa.087810	Bottle gourd (USVL1VR-Ls)	cgylsiB098
Cucsa.087810	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.087810	Silver-seed gourd	carcgyB0016
Cucsa.087810	Silver-seed gourd	carcgyB1127
Cucsa.087810	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.087810	Watermelon (97103) v2	cgywmbB096
Cucsa.087810	Wax gourd	cgywgoB111
Cucsa.087810	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.087810	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.087810	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.087810	Cucurbita moschata (Rifu)	cgycmoB0166
Cucsa.087810	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.087810	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.087810	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.087810	Watermelon (97103) v1	cgywmB104