Cucsa.079570 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079570
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Zinc knuckle containing protein
Location	scaffold00793 : 2433665 .. 2434014 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAACCATGACTCTCGACTAACTGGAACAACATCATTCCCTGAAGTGAATGCTGTATTTTCAAACAATAATGGTCGAGGTTGTGGTCGTGGTCGTGGTCGAAGTCGTGACCGTGGTAAAGGAAGAAGTAATTATACCTTCTGTGGTAATACTCATTCAGATTCCAAAAAAaCCACGCAAATGATGATCATACAGGAAAAaCTCCACAAAATAATAAATTTAAAAGTGGTGAAAATCAATGCTTTCGTTGTGGTATGAATGATCATTGGACTTGTACTTGTCGTACATCCAAGCACTTAGTCAACCTCTATCAAGCCTCATTGAAGGAAAAaGGGAAGAATGTGGAA

mRNA sequence

atgaaaaaccatgactctcgactaactggaacaacatcattccctgaagtgaatgctgtattttcaaacaataatggtcgaggttgtggtcgtggtcgtggtcgaagtcgtgaccgtggtaaaggaagaagtaattataccttctgtggaaaaactccacaaaataataaatttaaaagtggtgaaaatcaatgctttcgttgtggtatgaatgatcattggacttgtacttgtcgtacatccaagcacttagtcaacctctatcaagcctcattgaaggaaaaagggaagaatgtggaa

Coding sequence (CDS)

ATGAAAAACCATGACTCTCGACTAACTGGAACAACATCATTCCCTGAAGTGAATGCTGTATTTTCAAACAATAATGGTCGAGGTTGTGGTCGTGGTCGTGGTCGAAGTCGTGACCGTGGTAAAGGAAGAAGTAATTATACCTTCTGTGGAAAAaCTCCACAAAATAATAAATTTAAAAGTGGTGAAAATCAATGCTTTCGTTGTGGTATGAATGATCATTGGACTTGTACTTGTCGTACATCCAAGCACTTAGTCAACCTCTATCAAGCCTCATTGAAGGAAAAaGGGAAGAATGTGGAA

Protein sequence

MKNHDSRLTGTTSFPEVNAVFSNNNGRGCGRGRGRSRDRGKGRSNYTFCGKTPQNNKFKSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEKGKNVE

Homology

[Close]

BLAST of Cucsa.079570 vs. TrEMBL
Match: A5C0A9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035070 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-20
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNNGRGCGRGRGRSRDRGKG-RSNYTFC---------- 60
           M+NH SR TG+  FPEVNA+ S   GRG GRGRGR R  G+  R + ++           
Sbjct: 183 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGRGRGHGRNPRYHGSYSNNSQKMKASL 242

Query: 61  --------------GKTPQNNKFKSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEK 101
                         GK  Q+   K+ EN C+RCGM  HW+ TCRT KHLV+LYQAS+K K
Sbjct: 243 HHQKWNNTETIQENGKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASIKAK 302

[Close]

BLAST of Cucsa.079570 vs. TrEMBL
Match: A5BSM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034881 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 58/123 (47.15%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNNGRGCGRGRGRSRDRG-------------------- 60
           M+NH SR TG+  FPEVNA+ S   GRG GRGRGR R R                     
Sbjct: 161 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGRGRGRNPRYHGSYSNNSQKMKASLHH 220

Query: 61  -KGRSNYTFC--GKTPQNNKFKSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEKGK 101
            K  +  T    GK  Q+   K+ EN C+RCGM  HW+ TCRT KHLV+LYQAS+K KGK
Sbjct: 221 QKWNNTETIQENGKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASIKAKGK 280

[Close]

BLAST of Cucsa.079570 vs. TrEMBL
Match: A5AJ43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006175 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 58/123 (47.15%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNNGRGCGRGRGRSRDRG-------------------- 60
           M+NH SR TG+  FPEVNA+ S   GRG GRGRGR R R                     
Sbjct: 183 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGRGRGRNPRYHGSYSNNSQKMKASLHH 242

Query: 61  -KGRSNYTFC--GKTPQNNKFKSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEKGK 101
            K  +  T    GK  Q+   K+ EN C+RCGM  HW+ TCRT KHLV+LYQAS+K KGK
Sbjct: 243 QKWNNTETIQENGKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASIKAKGK 302

[Close]

BLAST of Cucsa.079570 vs. TrEMBL
Match: A5B4M9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015758 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19
Identity = 56/123 (45.53%), Postives = 67/123 (54.47%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNNGRGCGRGRGRSRDRG-------------------- 60
           M+NH SR TG+  FPEVNA+ S   GRG GRGRG  R                       
Sbjct: 183 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGXGRGXNPRYHGSYSNNSQKMKASLHH 242

Query: 61  -KGRSNYTFC--GKTPQNNKFKSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEKGK 101
            K  +  T    GK  Q+   K+ EN C+RCGM  HW+ TCRT KHLV+LYQAS+K KGK
Sbjct: 243 QKWNNTETIQENGKRLQDKPXKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASIKAKGK 302

[Close]

BLAST of Cucsa.079570 vs. TrEMBL
Match: A5ALL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015643 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-19
Identity = 53/125 (42.40%), Postives = 65/125 (52.00%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNNGRGCGRGRGRSRDRGKGRSNYTFCGKTPQNNKF-- 60
           M+NH  R TG+  FP+VNA+ S   GRG GRGRGR R  G+    +       Q  K   
Sbjct: 183 MRNHQCRPTGSEPFPKVNAISSQTRGRGRGRGRGRGRGHGRNPRYHGSYSNNSQKTKASL 242

Query: 61  -----------------------KSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEK 101
                                  K+ EN C+RCGM  HW+ TCRT KHLV+LYQAS+K K
Sbjct: 243 HHQKWNNTETIQENWKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASIKAK 302

[Close]

BLAST of Cucsa.079570 vs. NCBI nr
Match: gi|729341644|ref|XP_010540305.1| (PREDICTED: uncharacterized protein LOC104814122 [Tarenaya hassleriana])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 60/127 (47.24%), Postives = 72/127 (56.69%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNN-------GRGCGRGRGRSRDRGKGRSN-------- 60
           MKNH +R TG+T FPE+NA+FSN N       GRG GRGRGR R RG GR          
Sbjct: 183 MKNHHARPTGSTPFPEINAIFSNYNRWHDPGRGRGRGRGRGRGRGRGHGRGRGRGRNQSY 242

Query: 61  ------------YTFCGKTPQNNKFKSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLK 101
                         + G    +   +  +N C+RCGMNDHW+ TCRT KHLV LYQ S K
Sbjct: 243 QPHVLHNGGSKKRNYHGNEQYDTNKRHKDNICYRCGMNDHWSQTCRTPKHLVELYQQSRK 302

[Close]

BLAST of Cucsa.079570 vs. NCBI nr
Match: gi|729346196|ref|XP_010541843.1| (PREDICTED: uncharacterized protein LOC104815222 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 108.2 bits (269), Expect = 8.3e-21
Identity = 59/123 (47.97%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNN---GRGCGRGRGRSRDRGKGRSNYTFCGKTPQNNK 60
           MKNH +R TG+  FPE NA FSN N   GRG GRGR R R RG+GR        + Q   
Sbjct: 183 MKNHQARPTGSAPFPETNATFSNYNRWQGRGRGRGRSRGRGRGRGRGRGRGRNHSYQPQP 242

Query: 61  FKSG--------------------ENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEKGK 101
           F +G                    EN C+RCGMN HW+ TCRT KHLV LYQ S K+KGK
Sbjct: 243 FHNGDIKKREYHRSENYDANKRHKENICYRCGMNGHWSQTCRTPKHLVELYQQSRKDKGK 302

[Close]

BLAST of Cucsa.079570 vs. NCBI nr
Match: gi|729346193|ref|XP_010541842.1| (PREDICTED: uncharacterized protein LOC104815222 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 108.2 bits (269), Expect = 8.3e-21
Identity = 59/123 (47.97%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNN---GRGCGRGRGRSRDRGKGRSNYTFCGKTPQNNK 60
           MKNH +R TG+  FPE NA FSN N   GRG GRGR R R RG+GR        + Q   
Sbjct: 225 MKNHQARPTGSAPFPETNATFSNYNRWQGRGRGRGRSRGRGRGRGRGRGRGRNHSYQPQP 284

Query: 61  FKSG--------------------ENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEKGK 101
           F +G                    EN C+RCGMN HW+ TCRT KHLV LYQ S K+KGK
Sbjct: 285 FHNGDIKKREYHRSENYDANKRHKENICYRCGMNGHWSQTCRTPKHLVELYQQSRKDKGK 344

[Close]

BLAST of Cucsa.079570 vs. NCBI nr
Match: gi|729346199|ref|XP_010541844.1| (PREDICTED: uncharacterized protein LOC104815222 isoform X3 [Tarenaya hassleriana])

HSP 1 Score: 108.2 bits (269), Expect = 8.3e-21
Identity = 59/123 (47.97%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNN---GRGCGRGRGRSRDRGKGRSNYTFCGKTPQNNK 60
           MKNH +R TG+  FPE NA FSN N   GRG GRGR R R RG+GR        + Q   
Sbjct: 48  MKNHQARPTGSAPFPETNATFSNYNRWQGRGRGRGRSRGRGRGRGRGRGRGRNHSYQPQP 107

Query: 61  FKSG--------------------ENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEKGK 101
           F +G                    EN C+RCGMN HW+ TCRT KHLV LYQ S K+KGK
Sbjct: 108 FHNGDIKKREYHRSENYDANKRHKENICYRCGMNGHWSQTCRTPKHLVELYQQSRKDKGK 167

[Close]

BLAST of Cucsa.079570 vs. NCBI nr
Match: gi|147822235|emb|CAN66208.1| (hypothetical protein VITISV_035070 [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-20
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MKNHDSRLTGTTSFPEVNAVFSNNNGRGCGRGRGRSRDRGKG-RSNYTFC---------- 60
           M+NH SR TG+  FPEVNA+ S   GRG GRGRGR R  G+  R + ++           
Sbjct: 183 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGRGRGHGRNPRYHGSYSNNSQKMKASL 242

Query: 61  --------------GKTPQNNKFKSGENQCFRCGMNDHWTCTCRTSKHLVNLYQASLKEK 101
                         GK  Q+   K+ EN C+RCGM  HW+ TCRT KHLV+LYQAS+K K
Sbjct: 243 HHQKWNNTETIQENGKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASIKAK 302

The following BLAST results are available for this feature:

BLAST of Cucsa.079570 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C0A9_VITVI	1.7e-20	45.60	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035070 PE=4 SV=1	[more]
A5BSM0_VITVI	2.2e-20	47.15	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034881 PE=4 SV=1	[more]
A5AJ43_VITVI	2.2e-20	47.15	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006175 PE=4 SV=1	[more]
A5B4M9_VITVI	2.4e-19	45.53	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015758 PE=4 SV=1	[more]
A5ALL7_VITVI	4.1e-19	42.40	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015643 PE=4 SV=1	[more]

BLAST of Cucsa.079570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729341644\|ref\|XP_010540305.1\|	1.5e-22	47.24	PREDICTED: uncharacterized protein LOC104814122 [Tarenaya hassleriana]	[more]
gi\|729346196\|ref\|XP_010541843.1\|	8.3e-21	47.97	PREDICTED: uncharacterized protein LOC104815222 isoform X2 [Tarenaya hassleriana...	[more]
gi\|729346193\|ref\|XP_010541842.1\|	8.3e-21	47.97	PREDICTED: uncharacterized protein LOC104815222 isoform X1 [Tarenaya hassleriana...	[more]
gi\|729346199\|ref\|XP_010541844.1\|	8.3e-21	47.97	PREDICTED: uncharacterized protein LOC104815222 isoform X3 [Tarenaya hassleriana...	[more]
gi\|147822235\|emb\|CAN66208.1\|	2.4e-20	45.60	hypothetical protein VITISV_035070 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.079570.1	Cucsa.079570.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.079570	CSPI07G12610	Wild cucumber (PI 183967)	cgycpiB079

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.079570	Watermelon (97103) v2	cgywmbB078
Cucsa.079570	Wax gourd	cgywgoB092
Cucsa.079570	Cucurbita maxima (Rimu)	cgycmaB0133
Cucsa.079570	Cucurbita maxima (Rimu)	cgycmaB0135
Cucsa.079570	Cucurbita maxima (Rimu)	cgycmaB0139
Cucsa.079570	Cucurbita maxima (Rimu)	cgycmaB0142
Cucsa.079570	Cucurbita moschata (Rifu)	cgycmoB0130
Cucsa.079570	Cucurbita moschata (Rifu)	cgycmoB0132
Cucsa.079570	Cucurbita moschata (Rifu)	cgycmoB0135
Cucsa.079570	Cucurbita moschata (Rifu)	cgycmoB0137
Cucsa.079570	Cucumber (Chinese Long) v2	cgycuB076
Cucsa.079570	Melon (DHL92) v3.5.1	cgymeB085
Cucsa.079570	Watermelon (Charleston Gray)	cgywcgB081
Cucsa.079570	Watermelon (97103) v1	cgywmB083
Cucsa.079570	Cucurbita pepo (Zucchini)	cgycpeB0136
Cucsa.079570	Cucurbita pepo (Zucchini)	cgycpeB0137
Cucsa.079570	Cucurbita pepo (Zucchini)	cgycpeB0139
Cucsa.079570	Bottle gourd (USVL1VR-Ls)	cgylsiB081
Cucsa.079570	Melon (DHL92) v3.6.1	cgymedB083
Cucsa.079570	Silver-seed gourd	carcgyB0071
Cucsa.079570	Silver-seed gourd	carcgyB0324
Cucsa.079570	Silver-seed gourd	carcgyB0945
Cucsa.079570	Cucumber (Chinese Long) v3	cgycucB080