CSPI07G12610 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G12610
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSimilarity to copia polyprotein
LocationChr7 : 10891854 .. 10892384 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTGAGAAAGGGGGTTTAAAAAATATTCTGAACTCATATCATGCTTTCTTGTGGCTGAACAAAATAACGAGTTATTAATGAAAAACCATGACTCTCGACCAACTGGAACAACACCATTCCCTGAAGCGAATGCTGTATTTTCAAACAATAATGGTCGAGGTTGTGGTCGTGGTCGTGGTCGAAGTCGTGACCGTGGTAAAGGAATAAGTAATTATACCTTTTGTGGTAATACTCATTCAGATTCCAAAAAAACCACAAATGATGATCATACAGGAAAAACTCCACAAAATAATAAATTTAAAAGTGGTGAAAATCAATGCTTTCATTGTGGTATGAATGATCATTGGACTTGTACTTGTCGTACATCCAAGCACTTAGTCGACCTCTATCAAGCCTCATTGAAGGAAAAAGGGAAGAATGTGGAAGTAAACTTTGTCTATCAAGATGATGTCTATGACCTTTCGAATATGACACATTTGTATGTTGCTGATTATTTTGAGTCTCCTGAAGAGAAATCTGATGTTAATTAA

mRNA sequence

ATGAAAAACCATGACTCTCGACCAACTGGAACAACACCATTCCCTGAAGCGAATGCTGTATTTTCAAACAATAATGGTCGAGGTTGTGGTCGTGGTCGTGGTCGAAGTCGTGACCGTGGTAAAGGAATAAGTAATTATACCTTTTGTGGTAATACTCATTCAGATTCCAAAAAAACCACAAATGATGATCATACAGGAAAAACTCCACAAAATAATAAATTTAAAAGTGGTGAAAATCAATGCTTTCATTGTGGTATGAATGATCATTGGACTTGTACTTGTCGTACATCCAAGCACTTAGTCGACCTCTATCAAGCCTCATTGAAGGAAAAAGGGAAGAATGTGGAAGTAAACTTTGTCTATCAAGATGATGTCTATGACCTTTCGAATATGACACATTTGTATGTTGCTGATTATTTTGAGTCTCCTGAAGAGAAATCTGATGTTAATTAA

Coding sequence (CDS)

ATGAAAAACCATGACTCTCGACCAACTGGAACAACACCATTCCCTGAAGCGAATGCTGTATTTTCAAACAATAATGGTCGAGGTTGTGGTCGTGGTCGTGGTCGAAGTCGTGACCGTGGTAAAGGAATAAGTAATTATACCTTTTGTGGTAATACTCATTCAGATTCCAAAAAAACCACAAATGATGATCATACAGGAAAAACTCCACAAAATAATAAATTTAAAAGTGGTGAAAATCAATGCTTTCATTGTGGTATGAATGATCATTGGACTTGTACTTGTCGTACATCCAAGCACTTAGTCGACCTCTATCAAGCCTCATTGAAGGAAAAAGGGAAGAATGTGGAAGTAAACTTTGTCTATCAAGATGATGTCTATGACCTTTCGAATATGACACATTTGTATGTTGCTGATTATTTTGAGTCTCCTGAAGAGAAATCTGATGTTAATTAA
Homology
[Close]
BLAST of CSPI07G12610 vs. TrEMBL
Match: A5C0A9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035070 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-23
Identity = 70/152 (46.05%), Postives = 89/152 (58.55%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKK-- 60
           M+NH SRPTG+ PFPE NA+ S   GRG GRGRGR R  G+   N  + G+  ++S+K  
Sbjct: 183 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGRGRGHGR---NPRYHGSYSNNSQKMK 242

Query: 61  ----------TTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLYQASL 120
                     T      GK  Q+   K+ EN C+ CGM  HW+ TCRT KHLVDLYQAS+
Sbjct: 243 ASLHHQKWNNTETIQENGKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASI 302

Query: 121 KEKGKNVEVNFVYQDDVYDLSNMTHLYVADYF 141
           K KGK +E+NF   D + DL+     Y  D+F
Sbjct: 303 KAKGKEIEMNFTNGDGL-DLT----YYDIDFF 326

[Close]
BLAST of CSPI07G12610 vs. TrEMBL
Match: A5AJ43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006175 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 70/152 (46.05%), Postives = 87/152 (57.24%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKK-- 60
           M+NH SRPTG+ PFPE NA+ S   GRG GRGRGR R R     N  + G+  ++S+K  
Sbjct: 183 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGRGRGR-----NPRYHGSYSNNSQKMK 242

Query: 61  ----------TTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLYQASL 120
                     T      GK  Q+   K+ EN C+ CGM  HW+ TCRT KHLVDLYQAS+
Sbjct: 243 ASLHHQKWNNTETIQENGKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASI 302

Query: 121 KEKGKNVEVNFVYQDDVYDLSNMTHLYVADYF 141
           K KGK +E+NF    D  DL+     Y  D+F
Sbjct: 303 KAKGKEIEMNFT-DGDGLDLT----YYDIDFF 324

[Close]
BLAST of CSPI07G12610 vs. TrEMBL
Match: A5BSM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034881 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 70/152 (46.05%), Postives = 87/152 (57.24%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKK-- 60
           M+NH SRPTG+ PFPE NA+ S   GRG GRGRGR R R     N  + G+  ++S+K  
Sbjct: 161 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGRGRGR-----NPRYHGSYSNNSQKMK 220

Query: 61  ----------TTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLYQASL 120
                     T      GK  Q+   K+ EN C+ CGM  HW+ TCRT KHLVDLYQAS+
Sbjct: 221 ASLHHQKWNNTETIQENGKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASI 280

Query: 121 KEKGKNVEVNFVYQDDVYDLSNMTHLYVADYF 141
           K KGK +E+NF    D  DL+     Y  D+F
Sbjct: 281 KAKGKEIEMNFT-DGDGLDLT----YYDIDFF 302

[Close]
BLAST of CSPI07G12610 vs. TrEMBL
Match: A5B4M9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015758 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.0e-22
Identity = 68/152 (44.74%), Postives = 85/152 (55.92%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKK-- 60
           M+NH SRPTG+ PFPE NA+ S   GRG GRGRG  R       N  + G+  ++S+K  
Sbjct: 183 MRNHQSRPTGSEPFPEVNAISSQTRGRGRGRGRGXGRGX-----NPRYHGSYSNNSQKMK 242

Query: 61  ----------TTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLYQASL 120
                     T      GK  Q+   K+ EN C+ CGM  HW+ TCRT KHLVDLYQAS+
Sbjct: 243 ASLHHQKWNNTETIQENGKRLQDKPXKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASI 302

Query: 121 KEKGKNVEVNFVYQDDVYDLSNMTHLYVADYF 141
           K KGK +E+NF    D  DL+     Y  D+F
Sbjct: 303 KAKGKEIEMNFT-DGDGLDLT----YYDIDFF 324

[Close]
BLAST of CSPI07G12610 vs. TrEMBL
Match: A5ALL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015643 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.0e-22
Identity = 68/152 (44.74%), Postives = 87/152 (57.24%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKKTT 60
           M+NH  RPTG+ PFP+ NA+ S   GRG GRGRGR R  G+   N  + G+  ++S+KT 
Sbjct: 183 MRNHQCRPTGSEPFPKVNAISSQTRGRGRGRGRGRGRGHGR---NPRYHGSYSNNSQKTK 242

Query: 61  NDDH------------TGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLYQASL 120
              H              K  Q+   K+ EN C+ CGM  HW+ TCRT KHLVDLYQAS+
Sbjct: 243 ASLHHQKWNNTETIQENWKRLQDKPPKNHENNCYRCGMKGHWSRTCRTPKHLVDLYQASI 302

Query: 121 KEKGKNVEVNFVYQDDVYDLSNMTHLYVADYF 141
           K KGK +E+NF    D  DL+     Y  D+F
Sbjct: 303 KAKGKEIEMNFT-DGDGLDLT----YYDIDFF 326

[Close]
BLAST of CSPI07G12610 vs. NCBI nr
Match: gi|731351548|ref|XP_010687096.1| (PREDICTED: uncharacterized protein LOC104901243 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.2 bits (326), Expect = 3.1e-27
Identity = 77/162 (47.53%), Postives = 94/162 (58.02%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAV--------FSNNNGRGCGRGRGRSRDRGKGISNYTFCG-- 60
           MKNH+SRPTG+ PFPEANA          +NN+GRG G G GR R RG+G       G  
Sbjct: 178 MKNHESRPTGSAPFPEANATSHNGKEKYHANNSGRGRGYGHGRGRGRGRGYGYGRGRGRG 237

Query: 61  ------NTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLY 120
                 N++S  K    DD+  +  +N       N C+ CG   HW+ TCRT KHLVDLY
Sbjct: 238 RGGYFQNSYSHQKGDNKDDNKQEKDKNENVT---NVCYRCGGKGHWSRTCRTPKHLVDLY 297

Query: 121 QASLKEKGKNVEVNFVYQDDV--YDLSNMTHLYVADYFESPE 145
           Q SLK+KGK VE N VY+D    +D  N THL VAD+F +PE
Sbjct: 298 QQSLKQKGKKVETNLVYEDGEGDFDCGNTTHLEVADFFTTPE 336

[Close]
BLAST of CSPI07G12610 vs. NCBI nr
Match: gi|731365214|ref|XP_010694402.1| (PREDICTED: uncharacterized protein LOC104907206 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.2 bits (326), Expect = 3.1e-27
Identity = 76/162 (46.91%), Postives = 94/162 (58.02%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAV--------FSNNNGRGCGRGRGRSRDRGKGIS-------- 60
           MKNH+SRPTG+ PFPEANA          +NN+GRG GRG G  R RG+G          
Sbjct: 183 MKNHESRPTGSAPFPEANATSHNGKEKYHANNSGRGRGRGHGHGRGRGRGRGYGYGRGRG 242

Query: 61  NYTFCGNTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLY 120
              +  N++S  K    DD+  +  +N       N C+ CG   HW+ TCRT KHLVDLY
Sbjct: 243 RGGYFQNSYSHQKGDNKDDNKQEKDKNENVT---NVCYRCGGKGHWSRTCRTPKHLVDLY 302

Query: 121 QASLKEKGKNVEVNFVYQDDV--YDLSNMTHLYVADYFESPE 145
           Q SLK+KGK VE N VY+D    +D  N THL VAD+F +PE
Sbjct: 303 QQSLKQKGKKVETNLVYEDGEGDFDCGNTTHLEVADFFTTPE 341

[Close]
BLAST of CSPI07G12610 vs. NCBI nr
Match: gi|731314346|ref|XP_010685542.1| (PREDICTED: uncharacterized protein LOC104899944 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-27
Identity = 79/162 (48.77%), Postives = 95/162 (58.64%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAV--------FSNNNGRGCGRG----RGRSRDRGKGISNYTF 60
           MKNH+SRPTG+ PFPEANA          +NN+GRG GRG    RGR R RG G      
Sbjct: 183 MKNHESRPTGSAPFPEANATSHNGKEKYHANNSGRGRGRGYGHGRGRGRGRGYGYGRGRG 242

Query: 61  CG----NTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLY 120
            G    N++S  K    DD+  +  +N       N C+ CG   HW+ TCRT KHLVDLY
Sbjct: 243 RGGYFQNSYSHQKGDNKDDNKQEKDKNENVT---NVCYRCGGKGHWSRTCRTPKHLVDLY 302

Query: 121 QASLKEKGKNVEVNFVYQDDV--YDLSNMTHLYVADYFESPE 145
           Q SLK+KGK VE N VY+D    +D  N THL VAD+F +PE
Sbjct: 303 QQSLKQKGKKVETNLVYEDGEGDFDCGNTTHLEVADFFTTPE 341

[Close]
BLAST of CSPI07G12610 vs. NCBI nr
Match: gi|729341644|ref|XP_010540305.1| (PREDICTED: uncharacterized protein LOC104814122 [Tarenaya hassleriana])

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-27
Identity = 76/166 (45.78%), Postives = 96/166 (57.83%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAVFSNNN-----GRGCGRGRGRSRDRGKGISNYTFCGNT--- 60
           MKNH +RPTG+TPFPE NA+FSN N     GRG GRGRGR R RG+G       G     
Sbjct: 183 MKNHHARPTGSTPFPEINAIFSNYNRWHDPGRGRGRGRGRGRGRGRGHGRGRGRGRNQSY 242

Query: 61  -----HSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLYQAS 120
                H+   K  N     +   N + K  +N C+ CGMNDHW+ TCRT KHLV+LYQ S
Sbjct: 243 QPHVLHNGGSKKRNYHGNEQYDTNKRHK--DNICYRCGMNDHWSQTCRTPKHLVELYQQS 302

Query: 121 LKEKGKNVEVNF---VYQDDVYDLSNMTHLYVADYFESPEEKSDVN 151
            K+KGKNV+ NF   V+ D +    +  HL +AD+ + PE+    N
Sbjct: 303 RKDKGKNVQTNFVSDVHDDSIGKEEDGIHLDIADFLDQPEDGKMTN 346

[Close]
BLAST of CSPI07G12610 vs. NCBI nr
Match: gi|731345896|ref|XP_010684163.1| (PREDICTED: uncharacterized protein LOC104898758 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 129.0 bits (323), Expect = 6.9e-27
Identity = 79/164 (48.17%), Postives = 95/164 (57.93%), Query Frame = 1 

Query: 1   MKNHDSRPTGTTPFPEANAV--------FSNNNGRGCGRG------RGRSRDRGKGISNY 60
           MKNH+SRPTG+ PFPEANA          +NN+GRG GRG      RGR R RG G    
Sbjct: 183 MKNHESRPTGSAPFPEANATSHNGKEKYHANNSGRGRGRGHGYGHGRGRGRGRGYGYGRG 242

Query: 61  TFCG----NTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVD 120
              G    N++S  K    DD+  +  +N       N C+ CG   HW+ TCRT KHLVD
Sbjct: 243 RGRGGYFQNSYSHQKGDNKDDNKQEKDKNENVT---NVCYRCGGKGHWSRTCRTPKHLVD 302

Query: 121 LYQASLKEKGKNVEVNFVYQDDV--YDLSNMTHLYVADYFESPE 145
           LYQ SLK+KGK VE N VY+D    +D  N THL VAD+F +PE
Sbjct: 303 LYQQSLKQKGKKVETNLVYEDGEGDFDCGNTTHLEVADFFTTPE 343

The following BLAST results are available for this feature:
BLAST of CSPI07G12610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G12610 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C0A9_VITVI1.9e-2346.05Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035070 PE=4 SV=1[more]
A5AJ43_VITVI5.5e-2346.05Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006175 PE=4 SV=1[more]
A5BSM0_VITVI5.5e-2346.05Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034881 PE=4 SV=1[more]
A5B4M9_VITVI6.0e-2244.74Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015758 PE=4 SV=1[more]
A5ALL7_VITVI6.0e-2244.74Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015643 PE=4 SV=1[more]
BLAST of CSPI07G12610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G12610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|731351548|ref|XP_010687096.1|3.1e-2747.53PREDICTED: uncharacterized protein LOC104901243 [Beta vulgaris subsp. vulgaris][more]
gi|731365214|ref|XP_010694402.1|3.1e-2746.91PREDICTED: uncharacterized protein LOC104907206 [Beta vulgaris subsp. vulgaris][more]
gi|731314346|ref|XP_010685542.1|4.0e-2748.77PREDICTED: uncharacterized protein LOC104899944 [Beta vulgaris subsp. vulgaris][more]
gi|729341644|ref|XP_010540305.1|5.2e-2745.78PREDICTED: uncharacterized protein LOC104814122 [Tarenaya hassleriana][more]
gi|731345896|ref|XP_010684163.1|6.9e-2748.17PREDICTED: uncharacterized protein LOC104898758 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G12610.1CSPI07G12610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 61..100
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G12610Cucsa.079570Cucumber (Gy14) v1cgycpiB079
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G12610Silver-seed gourdcarcpiB0307
CSPI07G12610Cucumber (Chinese Long) v3cpicucB414
CSPI07G12610Watermelon (97103) v2cpiwmbB597
CSPI07G12610Wax gourdcpiwgoB718
CSPI07G12610Cucurbita maxima (Rimu)cmacpiB045
CSPI07G12610Cucurbita maxima (Rimu)cmacpiB493
CSPI07G12610Cucurbita moschata (Rifu)cmocpiB035
CSPI07G12610Cucurbita moschata (Rifu)cmocpiB484
CSPI07G12610Cucumber (Chinese Long) v2cpicuB354
CSPI07G12610Melon (DHL92) v3.5.1cpimeB528
CSPI07G12610Watermelon (Charleston Gray)cpiwcgB554
CSPI07G12610Watermelon (97103) v1cpiwmB586
CSPI07G12610Cucurbita pepo (Zucchini)cpecpiB593
CSPI07G12610Cucurbita pepo (Zucchini)cpecpiB801
CSPI07G12610Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G12610Melon (DHL92) v3.6.1cpimedB514
CSPI07G12610Cucumber (Gy14) v2cgybcpiB331