Cucsa.079130 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Photosystem II reaction center PsbP family protein
Location	scaffold00793 : 1741610 .. 1744329 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCTTCTCCCTTCACATCCACACAAGGTTCAAACACAACCAAGTTTCCTTTTGCAATTTCTACACTCTTCTTCTTCCTCCATTTCCACTCTCCAATTCGTCTCCAGAAATCATCGTTTCTGGTTTCGGATGGGAACCACATTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCATCAATACCTTCCTTCCCCCCATCTCCCTCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCGTCCACGGTGCCCACAACCAAAACCCCATCTCATCTACCGCTTTGAATCGGAGATGGGCTTTGGTTTCCGGTGTTTCCTTGCTTTCTTCCGCGGCTTTGGGGTTGCAAAACGACTGTTTGGCTGCAGTGAAGCAAGGCCTTCTTGCTGGCAGGATTCCCGGGTTGTCTGAACCAGATGAACAGGGTTGGCTTTTGTCATTTCCTTTTCTACTTTACATCTGTCAATCTTCTGGTTGCTCTAATTTGTGGGTTGTCAAACACTTTTGTTCATTCTTCTCTAACTCTATCAATTTTGTTCATGTAGTTTTACTTTTGGAGCGATTTATAGTCTTTCAATATGGTTAAGTTACGAGCATGGATTATGGACTTTCATGTCTTTTAACTTTTGAAAGTATAATATCAGGTTTCTTAAACCTTCATATTTGAGGTCTTTAATATACTCATAAACTTTTTtGCATAAAGTTGAAATTTGATGGACATATCAGATACATAAATGAAAGTCTAGGGACTTATTTTAATGTTCAGTGACTTGTTTGACAAAAATTAAGAAGTCCAAGGACAATTTGTAGCTGAACCTTTAAAATTTGTACATTGAAGAATACAGATGCCATGTATACTTTTCGTTGCCATTTAATTGAATACTTAGTGAATCAATATATATTCACAAAAATGCAGGGGTTGAAATGAAATAAATGAAACAAAGTGTAGAATGTTAAAAACACTATAATACGAAGACTAGAGTTAGTTAATATAACCTTTTCTTCGTTGGGCTATAGCTGAATCTCTGCAGTAAGAAAACAAACGGAGCTGTTCATGTCATCTTTTCTATATCAACTCACATAGGCCATTGTCTTTCTGTTTTGCTAGCGCAGGAATTTCTTGTGCCAAACATACAAAAATGTTAAGTTCTTGAATAAAAATATGTCCAGCAAATTTCATTTTGACCATTGGATGCTTTGAACTGCTTTCCCTTTCATCTCAAGCTTAGCATATCTGGTTTCTTGTTTGTTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCTGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTAAATGCTGCTTGATATTCCTCTTTTAAGTTTTAACCTAACTAAAGATGATGATGAAGACCTACAAAAGAAACAAATGGCTTCTACCTCAAACAGTTTCTTCATCAGATTAGAGAAACTAATGAAACTTGACCAACCATTTAAACTAATAAGATATTAACCTGGATTGTTAGGCAGTTGCTTTGAGTGGTTTTGAGTCTCCACGCTGAAGGATGACTTAATTGGTGGCCATCCACTAAGAATATTAAAATTGAACGAGTTTCTTGACAGTTAAAAGAAAACCAACAATTATCTTTGGAATCTGTGACACATCCTTGTTGACTAGAGGAGTAGAGTGATGCCTGTATATATAAACATGGTAAAGAAAGATCCAATGGTATCTATTTCCAGTTTATATCTCTGCCTGGAATTAAAATTTGTCATTCTAATTGGATATCTCCATGCAAGTTAATTTCACGTTCATTTTGATTAAAGAAAGACATGCAACAATGGACATGAGACAATGTGCTTTTGTGTTGCAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGGGTGTTTGTAGTCGTTGCGCCTGTTCGTCGGTTTTCCGATGGTGCATTTCCCCAAAACTTTATGCTTCTTGTTCAGCTTTCCATTTCAATATACTGCCACCTCTCACTCTTCTGAGATCTGACTTTGTTATTGTTTTGTGAAGTTATCGGCGAGGATGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTTGGACCAGAAGTGATAGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCGGCAGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGTAAGAGCCTACAAAGAACACCTTGTTTATATGATATGAGTTAAAATCATATAAGAAATCAATTGTTTTCCATTAGAACTAAAGAAAGTTTTTTTCTTGGTTTCTTATAGGCCTTCAATGGAAGAGACACTACAATGACTTGAAAAGGATTGCGGATTCGTTTCGCATAGTGTGATGAAGTTGTTCCAAAACTAGTTATAGTATGCATATACATTTTGATTTACAGGAGAAATAGTTGGTCGAAGCCTTAAGGTTTTTGTTTGATTGATTGGCTTTGCATTACCATATGTTTATACTTCTGCTTGATGGAGGAGACATGACCTTGATATATTGAGTCGTAGTTGTATCGACATGACAGAATTAATATCATCGTGTAAAGTAATTG

mRNA sequence

ATGCCCTCTTCTCCCTTCACATCCACACAAGGTTCAAACACAACCAAGTTTCCTTTTGCAATTTCTACACTCTTCTTCTTCCTCCATTTCCACTCTCCAATTCGTCTCCAGAAATCATCGTTTCTGGTTTCGGATGGGAACCACATTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCATCAATACCTTCCTTCCCCCCATCTCCCTCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCGTCCACGGTGCCCACAACCAAAACCCCATCTCATCTACCGCTTTGAATCGGAGATGGGCTTTGGTTTCCGGTGTTTCCTTGCTTTCTTCCGCGGCTTTGGGGTTGCAAAACGACTGTTTGGCTGCAGTGAAGCAAGGCCTTCTTGCTGGCAGGATTCCCGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCTGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGGGTGTTTGTAGTCGTTGCGCCTGTTCGTCGGTTTTCCGATGTTATCGGCGAGGATGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTTGGACCAGAAGTGATAGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCGGCAGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGCCTTCAATGGAAGAGACACTACAATGACTTGAAAAGGATTGCGGATTCGTTTCGCATAGTGTGATGAAGTTGTTCCAAAACTAGTTATAGTATGCATATACATTTTGATTTACAGGAGAAATAGTTGGTCGAAGCCTTAAGGTTTTTGTTTGATTGATTGGCTTTGCATTACCATATGTTTATACTTCTGCTTGATGGAGGAGACATGACCTTGATATATTGAGTCGTAGTTGTATCGACATGACAGAATTAATATCATCGTGTAAAGTAATTG

Coding sequence (CDS)

ATGGGAACCACATTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCATCAATACCTTCCTTCCCCCCATCTCCCTCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCGTCCACGGTGCCCACAACCAAAACCCCATCTCATCTACCGCTTTGAATCGGAGATGGGCTTTGGTTTCCGGTGTTTCCTTGCTTTCTTCCGCGGCTTTGGGGTTGCAAAACGACTGTTTGGCTGCAGTGAAGCAAGGCCTTCTTGCTGGCAGGATTCCCGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCTGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGGGTGTTTGTAGTCGTTGCGCCTGTTCGTCGGTTTTCCGATGTTATCGGCGAGGATGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTTGGACCAGAAGTGATAGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCGGCAGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGCCTTCAATGGAAGAGACACTACAATGACTTGAAAAGGATTGCGGATTCGTTTCGCATAGTGTGA

Protein sequence

MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRIV*

Homology

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BLAST of Cucsa.079130 vs. Swiss-Prot
Match: PPD4_ARATH (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2)

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-94
Identity = 174/245 (71.02%), Postives = 199/245 (81.22%), Query Frame = 1


Query: 33  KRVSAVHGAHNQNPISSTA----------LNRRWALVSGVSLLSSAALGLQNDCLAAVKQ 92
           K++SA   ++++ P +S            L+RR  + SG+ + S+ AL    + LA VKQ
Sbjct: 17  KKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQ 76

Query: 93  GLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLG 152
           GLLAGR+PGLSEPDE+GWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLG
Sbjct: 77  GLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLG 136

Query: 153 GTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEG 212
           GTEIDLRF S KEGR+ V+VAPV RF+D +G+D  IE +G P KVINAFGPEVIGENVEG
Sbjct: 137 GTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEG 196

Query: 213 KVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIAD 268
           KV+S +VAEH GR YYQFELEPPHV+ITATAAGNRLYLF+VT NGLQWKRHY DLKRIA 
Sbjct: 197 KVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIAS 256

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BLAST of Cucsa.079130 vs. Swiss-Prot
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.2e-15
Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1


Query: 122 PYAFSVPQDWEEVPVSIADLGG--------TEIDLRFGSLKEGRVFVVVAPVRRFSDVIG 181
           PY F +P +W+++ ++    G           I+++F + K+G+V VV +P+ R ++   
Sbjct: 105 PYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNK-- 164

Query: 182 EDATIEMVGPPEKVINAFGPEVIGENVEG-KVISMSVAEHSGRTYYQFELEPP------H 241
            +ATIE +G PEKVI + GP V G + +  +++  S+ +   +TYY++ LE P      H
Sbjct: 165 PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSH 224

Query: 242 VIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRI 267
            +  ATA G+ + LF V+A   QW+     L+ I DSF++
Sbjct: 225 NLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

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BLAST of Cucsa.079130 vs. Swiss-Prot
Match: TL19_ARATH (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-07
Identity = 43/152 (28.29%), Postives = 69/152 (45.39%), Query Frame = 1


Query: 123 YAFSVPQDWEEVPVSIADLGGTEIDLRFGSLK---EGRVFVVVAPVRRFS--DVIGEDAT 182
           Y + VP+ W+E  VS  + G    D  F + K   E      +A  R+ +  DVI  +  
Sbjct: 86  YVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLA 145

Query: 183 IEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEP--PHVIITATAAG 242
           +  V   + +  A            KV+S    + +G+ YY +E++    H +IT T + 
Sbjct: 146 LSDVELQDLIAGA-----------DKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSK 205

Query: 243 NRLYLFNVTANGLQWKRHYNDLKRIADSFRIV 268
           NRLY   V A   +W R ++ L  + DSF+ V
Sbjct: 206 NRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226

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BLAST of Cucsa.079130 vs. TrEMBL
Match: A0A0A0K501_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G322590 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 1.0e-152
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60
           MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 268
           FNVTANGLQWKRHYNDLKRIADSFRIV
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

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BLAST of Cucsa.079130 vs. TrEMBL
Match: B9SJK7_RICCO (Thylakoid lumenal 29.8 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0138880 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 8.3e-107
Identity = 200/272 (73.53%), Postives = 222/272 (81.62%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYL-PSPHLPPHHFLPKRVSAVHGAHN----QNPISSTALNRR 60
           MGTT+F +  F   +HHQ + PS HL  H      VS +         + PI    L RR
Sbjct: 1   MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQETGVSRIRATIEPREFEKPIG--LLKRR 60

Query: 61  WALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGV 120
            ALVSG+SL SS  LG   D LAAVKQGLLAGRIPGLSEPDEQGWRTYRRPD+KSGGHGV
Sbjct: 61  SALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDDKSGGHGV 120

Query: 121 GWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGED 180
           GWSPIIPYAF VPQ+WEEVPVSIADLGGTEIDLRF S KEGR+FV+VAPV RF+D +G++
Sbjct: 121 GWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLFVIVAPVLRFADDLGDN 180

Query: 181 ATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAG 240
           ATIE +GPPEKVINAFGPEVIGENVEGKV+SM+VAEHSGR YYQFELEPPHV+ITATAAG
Sbjct: 181 ATIERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYYQFELEPPHVLITATAAG 240

Query: 241 NRLYLFNVTANGLQWKRHYNDLKRIADSFRIV 268
           NRLYLF+VT NGLQWKRHY DLKRIA+SFR+V
Sbjct: 241 NRLYLFSVTGNGLQWKRHYKDLKRIAESFRVV 270

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BLAST of Cucsa.079130 vs. TrEMBL
Match: B9GTN1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07330g PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 7.3e-103
Identity = 194/276 (70.29%), Postives = 217/276 (78.62%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYL-PSPHLPPH--HFLPKRVSAVHGAHN------QNPISSTA 60
           MGTTL  +      +HHQ + P  HL  H     P R      +        +N  S+  
Sbjct: 1   MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQESFPSRAKITAESRKNGFLDGENEKSAGF 60

Query: 61  LNRRWALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSG 120
           L RR  LVSGVSL+S++ LG   + LA VKQGLLAGRIPGLSEPD+QGWRTYRRPD+KSG
Sbjct: 61  LKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPGLSEPDDQGWRTYRRPDDKSG 120

Query: 121 GHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDV 180
           GHGVGWSPIIPY FSVPQ WEEVPVSIADLGGTEIDLRFGS KEGR+FV+VAPV RF+D 
Sbjct: 121 GHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVLRFADY 180

Query: 181 IGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITA 240
           +GE+ATIE +GPPEKVINAFGPEVIGENVEGKV+SM+V EHSGR YYQ+ELEPPH +ITA
Sbjct: 181 LGENATIEQIGPPEKVINAFGPEVIGENVEGKVLSMNVEEHSGRRYYQYELEPPHALITA 240

Query: 241 TAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRIV 268
           TAAGNRLYLFNVT NGLQWKRHY DLKRIA SFR+V
Sbjct: 241 TAAGNRLYLFNVTGNGLQWKRHYQDLKRIAYSFRVV 276

[Close]

BLAST of Cucsa.079130 vs. TrEMBL
Match: E0CQM8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15360 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.2e-102
Identity = 192/279 (68.82%), Postives = 216/279 (77.42%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGA------------HNQNPIS 60
           MGT++F +  FS   HH  +PS     H    K +S    A              +    
Sbjct: 1   MGTSIFTSCSFSWRNHHHIIPSHRFLSHSSPDKGLSVAKAAVDTRQNGCVEFVDEETEKF 60

Query: 61  STALNRRWALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDE 120
           S  L RR A+VSGVSL+SSA LG   + LA VKQGLLAGR+PGLSEPDEQGWRTYRRPDE
Sbjct: 61  SGFLKRRSAIVSGVSLISSAVLGFPREGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDE 120

Query: 121 KSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRF 180
           KSGGHGVGWSPIIPY FSVP  WEEVPVSIADLGGTEIDLRF + KEGR+FV+VAPV RF
Sbjct: 121 KSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLFVIVAPVLRF 180

Query: 181 SDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVI 240
           +D +G+DA +E +GPPEKVI AFGPEVIGENVEGKV+SM V EHSGRTYYQFELEPPHV+
Sbjct: 181 ADNLGDDAKVEKIGPPEKVIAAFGPEVIGENVEGKVLSMGVVEHSGRTYYQFELEPPHVL 240

Query: 241 ITATAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRIV 268
           ITATAAGNRLYLF+VTA+GLQWKRHY DLK+IADSFR+V
Sbjct: 241 ITATAAGNRLYLFSVTASGLQWKRHYKDLKKIADSFRVV 279

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BLAST of Cucsa.079130 vs. TrEMBL
Match: A0A0F7GYL3_9ROSI (Photosystem II reaction center PsbP family protein OS=Geranium incanum GN=PPD4 PE=2 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.6e-102
Identity = 191/267 (71.54%), Postives = 217/267 (81.27%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60
           MGTT+F    FS    H  L    L  + F   R  A  G       S   L RR ALVS
Sbjct: 1   MGTTVFGCCSFSYKRSHPQL----LGSNGFSRTRACAQDGGERA---SDGILKRRAALVS 60

Query: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           G+SL+SS+ LG   + LA VKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GISLISSSVLGFSGEGLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180
           IPY+FS+PQDWEEVPVSIADLGGTEIDLRF + K+GR+FV+VAPV RF+D +G++A +E+
Sbjct: 121 IPYSFSIPQDWEEVPVSIADLGGTEIDLRFANSKQGRLFVIVAPVLRFADNLGDNAKLEL 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           +GPP+KVI+AFGPEVIGENVEGKV+S  VAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 IGPPDKVISAFGPEVIGENVEGKVLSTEVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 268
           FNVTANGLQWKRHY DLK+IA+SFR+V
Sbjct: 241 FNVTANGLQWKRHYKDLKKIAESFRVV 260

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BLAST of Cucsa.079130 vs. TAIR10
Match: AT1G77090.1 (AT1G77090.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 347.4 bits (890), Expect = 7.7e-96
Identity = 174/245 (71.02%), Postives = 199/245 (81.22%), Query Frame = 1


Query: 33  KRVSAVHGAHNQNPISSTA----------LNRRWALVSGVSLLSSAALGLQNDCLAAVKQ 92
           K++SA   ++++ P +S            L+RR  + SG+ + S+ AL    + LA VKQ
Sbjct: 17  KKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQ 76

Query: 93  GLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLG 152
           GLLAGR+PGLSEPDE+GWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLG
Sbjct: 77  GLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLG 136

Query: 153 GTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEG 212
           GTEIDLRF S KEGR+ V+VAPV RF+D +G+D  IE +G P KVINAFGPEVIGENVEG
Sbjct: 137 GTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEG 196

Query: 213 KVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIAD 268
           KV+S +VAEH GR YYQFELEPPHV+ITATAAGNRLYLF+VT NGLQWKRHY DLKRIA 
Sbjct: 197 KVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIAS 256

[Close]

BLAST of Cucsa.079130 vs. TAIR10
Match: AT3G56650.1 (AT3G56650.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-16
Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1


Query: 122 PYAFSVPQDWEEVPVSIADLGG--------TEIDLRFGSLKEGRVFVVVAPVRRFSDVIG 181
           PY F +P +W+++ ++    G           I+++F + K+G+V VV +P+ R ++   
Sbjct: 105 PYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNK-- 164

Query: 182 EDATIEMVGPPEKVINAFGPEVIGENVEG-KVISMSVAEHSGRTYYQFELEPP------H 241
            +ATIE +G PEKVI + GP V G + +  +++  S+ +   +TYY++ LE P      H
Sbjct: 165 PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSH 224

Query: 242 VIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRI 267
            +  ATA G+ + LF V+A   QW+     L+ I DSF++
Sbjct: 225 NLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of Cucsa.079130 vs. TAIR10
Match: AT3G63540.1 (AT3G63540.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 48.5 bits (114), Expect = 7.4e-06
Identity = 40/148 (27.03%), Postives = 66/148 (44.59%), Query Frame = 1


Query: 127 VPQDWEEVPVSIADLGGTEIDLRFGSLK---EGRVFVVVAPVRRFS--DVIGEDATIEMV 186
           V + W+E  VS  + G    D  F + K   E      +A  R+ +  DVI  +  +  V
Sbjct: 4   VEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDV 63

Query: 187 GPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEP--PHVIITATAAGNRLY 246
              + +  A            KV+S    + +G+ YY +E++    H +IT T + N+LY
Sbjct: 64  ELQDLIAGA-----------DKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLY 123

Query: 247 LFNVTANGLQWKRHYNDLKRIADSFRIV 268
              V A   +W R ++ L  + DSF+ V
Sbjct: 124 AHFVNAPAPEWNRDHDTLTHLRDSFKTV 140

[Close]

BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|449443776|ref|XP_004139653.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 547.4 bits (1409), Expect = 1.4e-152
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60
           MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 268
           FNVTANGLQWKRHYNDLKRIADSFRIV
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|659123095|ref|XP_008461486.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 503.8 bits (1296), Expect = 1.8e-139
Identity = 248/265 (93.58%), Postives = 254/265 (95.85%), Query Frame = 1


Query: 3   TTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVSGV 62
           T LFITNPFSSIFH Q LPSP L PH FLPKRVSA+H AHNQNPISS AL RRW LVSGV
Sbjct: 4   TALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHCAHNQNPISSPALIRRWVLVSGV 63

Query: 63  SLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIP 122
           SLLSSAALGLQN+CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIP
Sbjct: 64  SLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIP 123

Query: 123 YAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEMVG 182
           YAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGR+FV+VAPVRRFSDVIGEDATIEMVG
Sbjct: 124 YAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIEMVG 183

Query: 183 PPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFN 242
           PPEKVINAFGPEVIGENVEGKVISMSVAE+SGRTYYQFELEPPHVIITATAAGNRLYLFN
Sbjct: 184 PPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLYLFN 243

Query: 243 VTANGLQWKRHYNDLKRIADSFRIV 268
           VTANGLQWKRHY DLKRIADSFR+V
Sbjct: 244 VTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|255570434|ref|XP_002526176.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X2 [Ricinus communis])

HSP 1 Score: 394.8 bits (1013), Expect = 1.2e-106
Identity = 200/272 (73.53%), Postives = 222/272 (81.62%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYL-PSPHLPPHHFLPKRVSAVHGAHN----QNPISSTALNRR 60
           MGTT+F +  F   +HHQ + PS HL  H      VS +         + PI    L RR
Sbjct: 1   MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQETGVSRIRATIEPREFEKPIG--LLKRR 60

Query: 61  WALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGV 120
            ALVSG+SL SS  LG   D LAAVKQGLLAGRIPGLSEPDEQGWRTYRRPD+KSGGHGV
Sbjct: 61  SALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDDKSGGHGV 120

Query: 121 GWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGED 180
           GWSPIIPYAF VPQ+WEEVPVSIADLGGTEIDLRF S KEGR+FV+VAPV RF+D +G++
Sbjct: 121 GWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLFVIVAPVLRFADDLGDN 180

Query: 181 ATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAG 240
           ATIE +GPPEKVINAFGPEVIGENVEGKV+SM+VAEHSGR YYQFELEPPHV+ITATAAG
Sbjct: 181 ATIERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYYQFELEPPHVLITATAAG 240

Query: 241 NRLYLFNVTANGLQWKRHYNDLKRIADSFRIV 268
           NRLYLF+VT NGLQWKRHY DLKRIA+SFR+V
Sbjct: 241 NRLYLFSVTGNGLQWKRHYKDLKRIAESFRVV 270

[Close]

BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|1000952001|ref|XP_015579057.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 385.6 bits (989), Expect = 7.2e-104
Identity = 200/285 (70.18%), Postives = 222/285 (77.89%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFHHQYL-PSPHLPPHHFLPKRVSAVHGAHN----QNPISSTALNRR 60
           MGTT+F +  F   +HHQ + PS HL  H      VS +         + PI    L RR
Sbjct: 1   MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQETGVSRIRATIEPREFEKPIG--LLKRR 60

Query: 61  WALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQ-------------GWRT 120
            ALVSG+SL SS  LG   D LAAVKQGLLAGRIPGLSEPDEQ             GWRT
Sbjct: 61  SALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQVNGQLRYAKYAQTGWRT 120

Query: 121 YRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVV 180
           YRRPD+KSGGHGVGWSPIIPYAF VPQ+WEEVPVSIADLGGTEIDLRF S KEGR+FV+V
Sbjct: 121 YRRPDDKSGGHGVGWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLFVIV 180

Query: 181 APVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFEL 240
           APV RF+D +G++ATIE +GPPEKVINAFGPEVIGENVEGKV+SM+VAEHSGR YYQFEL
Sbjct: 181 APVLRFADDLGDNATIERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYYQFEL 240

Query: 241 EPPHVIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRIV 268
           EPPHV+ITATAAGNRLYLF+VT NGLQWKRHY DLKRIA+SFR+V
Sbjct: 241 EPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIAESFRVV 283

[Close]

BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|720046211|ref|XP_010270435.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Nelumbo nucifera])

HSP 1 Score: 384.0 bits (985), Expect = 2.1e-103
Identity = 199/284 (70.07%), Postives = 221/284 (77.82%), Query Frame = 1


Query: 1   MGTTLFITNPFSSIFH---HQYLPSPHLPPHHF-----LPKRVSAVHGAHNQNPIS---- 60
           MGTTLF+   FS       +Q+L S  +  HH      L KR S                
Sbjct: 1   MGTTLFMNCWFSLGSRNQAYQFLQSRQILSHHVSVQSSLEKRCSTTKATRGSRENGFDDD 60

Query: 61  -----STALNRRWALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTY 120
                S  L RRWA+VSGVSL+S+A LG   + LA VKQ LLAGRIPGLSEPDEQGWRTY
Sbjct: 61  DTDKLSRFLTRRWAMVSGVSLVSAAVLGFPREGLAVVKQNLLAGRIPGLSEPDEQGWRTY 120

Query: 121 RRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVA 180
           RRPDEKSGGHGVGWSPIIPYAFSVP+DWEEVPVSIADLGGTEIDLRF S +EGR+FV+VA
Sbjct: 121 RRPDEKSGGHGVGWSPIIPYAFSVPKDWEEVPVSIADLGGTEIDLRFASTQEGRLFVIVA 180

Query: 181 PVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELE 240
           PV RF+D +G DATIE +GPPEKVINAFGPEVIGENVEGKV++M VAEHSGRTYYQ+ELE
Sbjct: 181 PVLRFAD-LGGDATIEQIGPPEKVINAFGPEVIGENVEGKVLTMEVAEHSGRTYYQYELE 240

Query: 241 PPHVIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRIV 268
           PPH +ITATAAGNRLYLF+VTANGLQWKRHY DLKRIA+SFR+V
Sbjct: 241 PPHALITATAAGNRLYLFSVTANGLQWKRHYKDLKRIAESFRVV 283

The following BLAST results are available for this feature:

BLAST of Cucsa.079130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD4_ARATH	1.4e-94	71.02	PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 ...	[more]
PPD6_ARATH	8.2e-15	32.50	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 ...	[more]
TL19_ARATH	4.8e-07	28.29	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g6...	[more]

BLAST of Cucsa.079130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K501_CUCSA	1.0e-152	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G322590 PE=4 SV=1	[more]
B9SJK7_RICCO	8.3e-107	73.53	Thylakoid lumenal 29.8 kDa protein, chloroplast, putative OS=Ricinus communis GN...	[more]
B9GTN1_POPTR	7.3e-103	70.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07330g PE=4 SV=1	[more]
E0CQM8_VITVI	1.2e-102	68.82	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15360 PE=4 SV=...	[more]
A0A0F7GYL3_9ROSI	3.6e-102	71.54	Photosystem II reaction center PsbP family protein OS=Geranium incanum GN=PPD4 P...	[more]

BLAST of Cucsa.079130 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77090.1	7.7e-96	71.02	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family pr...	[more]
AT3G56650.1	4.6e-16	32.50	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family pr...	[more]
AT3G63540.1	7.4e-06	27.03	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family pr...	[more]

BLAST of Cucsa.079130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443776\|ref\|XP_004139653.1\|	1.4e-152	100.00	PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis s...	[more]
gi\|659123095\|ref\|XP_008461486.1\|	1.8e-139	93.58	PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|255570434\|ref\|XP_002526176.1\|	1.2e-106	73.53	PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X2 [Ricinus c...	[more]
gi\|1000952001\|ref\|XP_015579057.1\|	7.2e-104	70.18	PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Ricinus c...	[more]
gi\|720046211\|ref\|XP_010270435.1\|	2.1e-103	70.07	PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Nelumbo n...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0015979	photosynthesis
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.079130.1	Cucsa.079130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 123..266 score: 2.3
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 109..266 score: 2.6
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 115..266 score: 2.56
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 2..267 score: 7.4E
None	No IPR available	PANTHER	PTHR31407:SF18	PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC	coord: 2..267 score: 7.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.079130	Cla015024	Watermelon (97103) v1	cgywmB083
Cucsa.079130	Csa7G322590	Cucumber (Chinese Long) v2	cgycuB076
Cucsa.079130	MELO3C023682	Melon (DHL92) v3.5.1	cgymeB086
Cucsa.079130	ClCG09G009710	Watermelon (Charleston Gray)	cgywcgB081
Cucsa.079130	CSPI07G13180	Wild cucumber (PI 183967)	cgycpiB079
Cucsa.079130	CmaCh09G010860	Cucurbita maxima (Rimu)	cgycmaB0133
Cucsa.079130	CmoCh09G010950	Cucurbita moschata (Rifu)	cgycmoB0130
Cucsa.079130	Lsi02G020120	Bottle gourd (USVL1VR-Ls)	cgylsiB081
Cucsa.079130	Cp4.1LG06g07670	Cucurbita pepo (Zucchini)	cgycpeB0139
Cucsa.079130	MELO3C023682.2	Melon (DHL92) v3.6.1	cgymedB084
Cucsa.079130	CsaV3_7G025030	Cucumber (Chinese Long) v3	cgycucB080
Cucsa.079130	Bhi09G001227	Wax gourd	cgywgoB092
Cucsa.079130	Carg27256	Silver-seed gourd	carcgyB0341

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.079130	Cucurbita maxima (Rimu)	cgycmaB0139
Cucsa.079130	Cucurbita moschata (Rifu)	cgycmoB0135
Cucsa.079130	Melon (DHL92) v3.5.1	cgymeB081
Cucsa.079130	Cucurbita pepo (Zucchini)	cgycpeB0137
Cucsa.079130	Melon (DHL92) v3.6.1	cgymedB080
Cucsa.079130	Silver-seed gourd	carcgyB1128
Cucsa.079130	Watermelon (97103) v2	cgywmbB078