Cucsa.079080 (gene) Cucumber (Gy14) v1

NameCucsa.079080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00793 : 1663322 .. 1664047 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGGATGACGATGACATAGTTAATTTAGCTTTAGTGTACTTTATAGAGCTGTCATTGTTAGAAAAAGATAGGCAGACCAAAGTGGACCGAACTTTATTTAGGATTACAGATGATTGGACCACATTTAACAATTATGATTGGGGAGGGTTGGTTTTTGGACGCACAATTTCTGCCTTAAAACGAGCCTTGGACATGCAACATGCCAAGGGAAAGAATAAGTAAGCTAACACAAAATATACTATCATGGAATTTCCGCATGCGTTACAGGTATGTTACTTCCTACTTCAAACTTATGCACATATTTATATATACATATATCTCAGAACACTTGCTAAACTTGTTTTGTTGAATATGGAATAGGTTTGGGCATATGAGTCTATACCAACCATCACTGAATGTGGTGTAAATAAAGTAAACAACGATGTCATGCCACGAATGCTAAGGTGGGTATGCGAACTATCTCAGAAGTCTTCTGTCCTACAGAGCCAGGTGTTTGACTCGCCAATGGTAAGTAGCAACCCAATAGTAACTAACTTACCAAATGCACGACTTTGTTCCTTTTTGTTTGGCCTAACTACATTTGTTTTTCCACTTTGTAGTTCATAATTAATGCGGTAATTGAGATGACGCCTAAAGATGAGCATTTAAGAATATCTTCAGGCGAACTTTTTGACAAACCCCATCCATCTAACATCGTTCCTGAGAAGAATGGTGGTTCAAAATGA

mRNA sequence

gggggatgacgatgacatagttaatttagctttagtgtactttatagagctgtcattgttagaaaaagataggcagaccaaagtggaccgaactttatttaggattacagatgattggaccacatttaacaattatgattggggagggttggtttttggacgcacaatttctgccttaaaacgagccttggacatgcaacatgccaagggaaagaataagtaagctaacacaaaatatactatcatggaatttccgcatgcgttacaggtttgggcatatgagtctataccaaccatcactgaatgtggtgtaaataaagtaaacaacgatgtcatgccacgaatgctaaggtgggtatgcgaactatctcagaagtcttctgtcctacagagccaggtgtttgactcgccaatgttcataattaatgcggtaattgagatgacgcctaaagatgagcatttaagaatatcttcaggcgaactttttgacaaaccccatccatctaacatcgttcctgagaagaatggtggttcaaaatga

Coding sequence (CDS)

ATGGAATTTCCGCATGCGTTACAGGTTTGGGCATATGAGTCTATACCAACCATCACTGAATGTGGTGTAAATAAAGTAAACAACGATGTCATGCCACGAATGCTAAGGTGGGTATGCGAACTATCTCAGAAGTCTTCTGTCCTACAGAGCCAGGTGTTTGACTCGCCAATGTTCATAATTAATGCGGTAATTGAGATGACGCCTAAAGATGAGCATTTAAGAATATCTTCAGGCGAACTTTTTGACAAACCCCATCCATCTAACATCGTTCCTGAGAAGAATGGTGGTTCAAAATGA

Protein sequence

MEFPHALQVWAYESIPTITECGVNKVNNDVMPRMLRWVCELSQKSSVLQSQVFDSPMFIINAVIEMTPKDEHLRISSGELFDKPHPSNIVPEKNGGSK*
BLAST of Cucsa.079080 vs. TrEMBL
Match: A0A0A0KM59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1

Query: 3   FPHALQVWAYESIPTITECGVNKVNNDVMPRMLRWVCELSQKSSVLQSQVFDSPMFIINA 62
           FPHA QVWAYE I +I    V ++NN+ +PR+LRW C  S  S +LQ  VF+S   +I+ 
Sbjct: 235 FPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRDVFNSMRIVISP 294

Query: 63  VIEMTPKDEHLRISSGELFDKP 85
            + M+  ++  R S  E+ ++P
Sbjct: 295 TLIMSDAEKQFRDS--EVDERP 314

BLAST of Cucsa.079080 vs. NCBI nr
Match: gi|778688738|ref|XP_004148595.2| (PREDICTED: uncharacterized protein LOC101207436 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 1

Query: 3   FPHALQVWAYESIPTITECGVNKVNNDVMPRMLRWVCELSQKSSVLQSQVFDSPMFIINA 62
           FPHALQVWAYESI TI  CGV K+N+DV+PRMLRWVC+ S KS  +QSQVFDSPM II A
Sbjct: 232 FPHALQVWAYESISTIIGCGVEKINDDVIPRMLRWVCQQSSKSYTIQSQVFDSPMLIIKA 291

Query: 63  VIEMTPKDEHLRISSGELFDKPHPSNIVPEKNGGSK 99
           VIEMTP++E LRISS ELFDK H SNIV  KNGGSK
Sbjct: 292 VIEMTPEEEQLRISSSELFDKLHSSNIVHMKNGGSK 327

BLAST of Cucsa.079080 vs. NCBI nr
Match: gi|778688678|ref|XP_011652810.1| (PREDICTED: uncharacterized protein LOC105435109 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 1

Query: 1   MEFPHALQVWAYESIPTITECGVNKVNNDVMPRMLRWVCELSQKSSVLQSQVFDSPMFII 60
           M FP ALQVWAYESIPTITECGV+KV+ND +PRMLRWVCELS KS VLQ QVFDSPMF+I
Sbjct: 66  MGFPQALQVWAYESIPTITECGVHKVSNDAIPRMLRWVCELSPKSHVLQRQVFDSPMFLI 125

Query: 61  NAVIEMTP-KDEHLRISSGELFDKPH 86
           N VIEM P ++EHLR+S  EL +KPH
Sbjct: 126 NVVIEMMPEEEEHLRMSLEELVEKPH 151

BLAST of Cucsa.079080 vs. NCBI nr
Match: gi|700194767|gb|KGN49944.1| (hypothetical protein Csa_5G141180 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-09
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1

Query: 3   FPHALQVWAYESIPTITECGVNKVNNDVMPRMLRWVCELSQKSSVLQSQVFDSPMFIINA 62
           FPHA QVWAYE I +I    V ++NN+ +PR+LRW C  S  S +LQ  VF+S   +I+ 
Sbjct: 235 FPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRDVFNSMRIVISP 294

Query: 63  VIEMTPKDEHLRISSGELFDKP 85
            + M+  ++  R S  E+ ++P
Sbjct: 295 TLIMSDAEKQFRDS--EVDERP 314

BLAST of Cucsa.079080 vs. NCBI nr
Match: gi|778699090|ref|XP_011654656.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-09
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1

Query: 3   FPHALQVWAYESIPTITECGVNKVNNDVMPRMLRWVCELSQKSSVLQSQVFDSPMFIINA 62
           FPHA QVWAYE I +I    V ++NN+ +PR+LRW C  S  S +LQ  VF+S   +I+ 
Sbjct: 318 FPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRDVFNSMRIVISP 377

Query: 63  VIEMTPKDEHLRISSGELFDKP 85
            + M+  ++  R S  E+ ++P
Sbjct: 378 TLIMSDAEKQFRDS--EVDERP 397

BLAST of Cucsa.079080 vs. NCBI nr
Match: gi|778699094|ref|XP_011654657.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-09
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1

Query: 3   FPHALQVWAYESIPTITECGVNKVNNDVMPRMLRWVCELSQKSSVLQSQVFDSPMFIINA 62
           FPHA QVWAYE I +I    V ++NN+ +PR+LRW C  S  S +LQ  VF+S   +I+ 
Sbjct: 316 FPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRDVFNSMRIVISP 375

Query: 63  VIEMTPKDEHLRISSGELFDKP 85
            + M+  ++  R S  E+ ++P
Sbjct: 376 TLIMSDAEKQFRDS--EVDERP 395

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KM59_CUCSA2.3e-0941.46Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778688738|ref|XP_004148595.2|1.4e-3376.04PREDICTED: uncharacterized protein LOC101207436 [Cucumis sativus][more]
gi|778688678|ref|XP_011652810.1|2.8e-2976.74PREDICTED: uncharacterized protein LOC105435109 [Cucumis sativus][more]
gi|700194767|gb|KGN49944.1|3.2e-0941.46hypothetical protein Csa_5G141180 [Cucumis sativus][more]
gi|778699090|ref|XP_011654656.1|3.2e-0941.46PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus][more]
gi|778699094|ref|XP_011654657.1|3.2e-0941.46PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.079080.1Cucsa.079080.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None