Cucsa.075620 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.075620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMicrosomal signal peptidase 12 kDa subunit family protein
Locationscaffold00789 : 273885 .. 274523 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCGGTGAATACATACCGCTCCCCGCTCTTCTTCGGATTCTCGAAAGCAATCGACAAAATCCTCTTTTCTTCCCGCCGATCATTCCCCTCTGGACTACACATCTCCGTCTCCGAATTCCCCAAAAGGTTACTACTCTCCCTCTCTCAATTTTCGAATTCCTTCCTGCTTCATTTGTTTAATTCTAAATCCTTGTTCATAGCGCGCTTAGGATTTTCCGTTTCACCAGGTGTAGGTAGGGATCTTCATTATAGTTAAATCTTTCTATTTGAGTTTTGACTAATCTTTCTTCATTCACGTTCTACGCCACCTTCTGGGTCGGATCTAACGATTATATCCTTATAATTCCATGTGTTAGATGGACTGGCAAGGGCAAAAGCTAGCGGAGCAGTTGATGCAACTTATGTTGGTTGCATTTGCCGTGGTTGCCTTTTTGACTGGCTATGTTATGGGATCATTTAGGTTGATGATCTTGGTTTACGCTGGCGGTGTGTTTCTCACCACATTAATCACTGTTCCGAATTGGCCTTTCTTTAATCGCCACCCTCTCAAGTGGTTGGATCCTAGTTTGGCTGAAAAATACCCTAAGCCGCAACCGCAGGAGCCTGTGGTTTTGAAGAAGAAACCTGCTAAGAAGTAG

mRNA sequence

GACCGGTGAATACATACCGCTCCCCGCTCTTCTTCGGATTCTCGAAAGCAATCGACAAAATCCTCTTTTCTTCCCGCCGATCATTCCCCTCTGGACTACACATCTCCGTCTCCGAATTCCCCAAAAGATGGACTGGCAAGGGCAAAAGCTAGCGGAGCAGTTGATGCAACTTATGTTGGTTGCATTTGCCGTGGTTGCCTTTTTGACTGGCTATGTTATGGGATCATTTAGGTTGATGATCTTGGTTTACGCTGGCGGTGTGTTTCTCACCACATTAATCACTGTTCCGAATTGGCCTTTCTTTAATCGCCACCCTCTCAAGTGGTTGGATCCTAGTTTGGCTGAAAAATACCCTAAGCCGCAACCGCAGGAGCCTGTGGTTTTGAAGAAGAAACCTGCTAAGAAGTAG

Coding sequence (CDS)

GACCGGTGAATACATACCGCTCCCCGCTCTTCTTCGGATTCTCGAAAGCAATCGACAAAATCCTCTTTTCTTCCCGCCGATCATTCCCCTCTGGACTACACATCTCCGTCTCCGAATTCCCCAAAAGATGGACTGGCAAGGGCAAAAGCTAGCGGAGCAGTTGATGCAACTTATGTTGGTTGCATTTGCCGTGGTTGCCTTTTTGACTGGCTATGTTATGGGATCATTTAGGTTGATGATCTTGGTTTACGCTGGCGGTGTGTTTCTCACCACATTAATCACTGTTCCGAATTGGCCTTTCTTTAATCGCCACCCTCTCAAGTGGTTGGATCCTAGTTTGGCTGAAAAATACCCTAAGCCGCAACCGCAGGAGCCTGTGGTTTTGAAGAAGAAACCTGCTAAGAAGTAG

Protein sequence

TGEYIPLPALLRILESNRQNPLFFPPIIPLWTTHLRLRIPQKMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFNRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK*
Homology
[Close]
BLAST of Cucsa.075620 vs. Swiss-Prot
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-29
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKL EQLMQ++LV   VVA + GY   SFR M+L+YAGGV LTTL+TVPNWPF+N
Sbjct: 1   MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
            HPLKWLDPS AEK+PKP+    V  KKK +KK
Sbjct: 61  LHPLKWLDPSEAEKHPKPEVVS-VASKKKFSKK 92

[Close]
BLAST of Cucsa.075620 vs. Swiss-Prot
Match: SPCS1_BOVIN (Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-13
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 39  IPQKMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNW 98
           +P +MD++GQKLAEQ+ Q +++  A+V F+ GY+   F   + +   G   + L+T+P W
Sbjct: 8   LPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYLAEQFGWTVYIVMAGFAFSCLLTLPPW 67

Query: 99  PFFNRHPLKWL---DPSLAEKYP 119
           P + RHPLKWL   D S  +K P
Sbjct: 68  PIYRRHPLKWLPVQDSSTEDKKP 90

[Close]
BLAST of Cucsa.075620 vs. Swiss-Prot
Match: SPCS1_PIG (Signal peptidase complex subunit 1 OS=Sus scrofa GN=SPCS1 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 39  IPQKMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNW 98
           +P +MD++GQKLAEQ+ Q +++  A+V F+ GYV   F   + +   G   + L+T+P W
Sbjct: 8   LPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPW 67

Query: 99  PFFNRHPLKWL---DPSLAEKYP 119
           P + RHPLKWL   D    +K P
Sbjct: 68  PIYRRHPLKWLPVQDSGTEDKKP 90

[Close]
BLAST of Cucsa.075620 vs. Swiss-Prot
Match: SPCS1_HUMAN (Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1 

Query: 39  IPQKMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNW 98
           +P +MD++GQKLAEQ+ Q +++  A+V F+ GYV   F   + +   G   + L+T+P W
Sbjct: 8   LPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPW 67

Query: 99  PFFNRHPLKWL 110
           P + RHPLKWL
Sbjct: 68  PIYRRHPLKWL 78

[Close]
BLAST of Cucsa.075620 vs. Swiss-Prot
Match: SPCS1_MOUSE (Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1 

Query: 39  IPQKMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNW 98
           +P +MD++GQKLAEQ+ Q +++  A+V F+ GYV   F   + +   G   + L+T+P W
Sbjct: 67  LPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPW 126

Query: 99  PFFNRHPLKWL 110
           P + RHPLKWL
Sbjct: 127 PIYRRHPLKWL 137

[Close]
BLAST of Cucsa.075620 vs. TrEMBL
Match: A0A0A0KS09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589960 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.7e-47
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 1 

Query: 30  LWTTHLRLRIPQKMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFL 89
           L+   L   +   MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFL
Sbjct: 98  LFIARLGFSVSPGMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFL 157

Query: 90  TTLITVPNWPFFNRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           TTLITVPNWPFFNRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK
Sbjct: 158 TTLITVPNWPFFNRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 203

[Close]
BLAST of Cucsa.075620 vs. TrEMBL
Match: W9S0F4_9ROSA (60S ribosomal protein L17-2 OS=Morus notabilis GN=L484_005471 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.1e-38
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1 

Query: 42  KMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFF 101
           KMDWQGQKLAEQLMQ+ML+AFAVV F TGYV+GSF+ M+L+YAGGV LTTLIT+PNWPFF
Sbjct: 221 KMDWQGQKLAEQLMQIMLLAFAVVGFATGYVLGSFQTMVLIYAGGVVLTTLITIPNWPFF 280

Query: 102 NRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           NRHPLKWLDPS AEK+PKPQ Q+PV  KKK +KK
Sbjct: 281 NRHPLKWLDPSEAEKHPKPQRQQPVTSKKKSSKK 314

[Close]
BLAST of Cucsa.075620 vs. TrEMBL
Match: A0A0S3R184_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G202900 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKLAEQ+MQ+ML+AFAV+AF +GYVM SF++MIL+YAGGV  TTL+TVPNWPFFN
Sbjct: 1   MDWQGQKLAEQMMQIMLLAFAVIAFASGYVMASFQMMILIYAGGVVFTTLLTVPNWPFFN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           RHPL WLDPS AEK+PKPQP   V  KKKP KK
Sbjct: 61  RHPLIWLDPSAAEKHPKPQPSANVTQKKKPVKK 93

[Close]
BLAST of Cucsa.075620 vs. TrEMBL
Match: A0A166E6S7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007008 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-35
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKLAEQLMQ++LVAFAVVAF TGYV+GSF++M+L+YAGGV LTTLITVPNWPFFN
Sbjct: 1   MDWQGQKLAEQLMQIILVAFAVVAFFTGYVLGSFQMMLLIYAGGVVLTTLITVPNWPFFN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAK 135
           RHPLKWLDPS+AEK+PKPQ       KKK +K
Sbjct: 61  RHPLKWLDPSVAEKHPKPQAAAATTSKKKGSK 92

[Close]
BLAST of Cucsa.075620 vs. TrEMBL
Match: A0A059D8V0_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B03484 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-35
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 42  KMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFF 101
           KMDWQGQKLAEQLMQ++LVAFAVVAF TGY +GSF+ MIL+YAGGV LTTL+TVPNWPFF
Sbjct: 44  KMDWQGQKLAEQLMQILLVAFAVVAFATGYTIGSFQTMILIYAGGVVLTTLVTVPNWPFF 103

Query: 102 NRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           NRHPLKWLDP  AEK+PK QPQ+P    KK + K
Sbjct: 104 NRHPLKWLDPIEAEKHPKLQPQQPSSSSKKKSSK 137

[Close]
BLAST of Cucsa.075620 vs. TAIR10
Match: AT4G40042.1 (AT4G40042.1 Microsomal signal peptidase 12 kDa subunit (SPC12))

HSP 1 Score: 133.7 bits (335), Expect = 8.8e-32
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKLAEQLMQ++L+  AVV+F+ GY   SFR+M+L+YAGGV LTTLIT+PNWP FN
Sbjct: 1   MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           RH LKWLDPS AEK+PKPQ       KK  +KK
Sbjct: 61  RHHLKWLDPSEAEKHPKPQVVVVSSKKKSSSKK 93

[Close]
BLAST of Cucsa.075620 vs. TAIR10
Match: AT2G22425.1 (AT2G22425.1 Microsomal signal peptidase 12 kDa subunit (SPC12))

HSP 1 Score: 130.6 bits (327), Expect = 7.5e-31
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKL EQLMQ++LV   VVA + GY   SFR M+L+YAGGV LTTL+TVPNWPF+N
Sbjct: 1   MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
            HPLKWLDPS AEK+PKP+    V  KKK +KK
Sbjct: 61  LHPLKWLDPSEAEKHPKPEVVS-VASKKKFSKK 92

[Close]
BLAST of Cucsa.075620 vs. NCBI nr
Match: gi|700196502|gb|KGN51679.1| (hypothetical protein Csa_5G589960 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 5.4e-47
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 1 

Query: 30  LWTTHLRLRIPQKMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFL 89
           L+   L   +   MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFL
Sbjct: 98  LFIARLGFSVSPGMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFL 157

Query: 90  TTLITVPNWPFFNRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           TTLITVPNWPFFNRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK
Sbjct: 158 TTLITVPNWPFFNRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 203

[Close]
BLAST of Cucsa.075620 vs. NCBI nr
Match: gi|449435059|ref|XP_004135313.1| (PREDICTED: probable signal peptidase complex subunit 1 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN
Sbjct: 1   MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK
Sbjct: 61  RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 93

[Close]
BLAST of Cucsa.075620 vs. NCBI nr
Match: gi|659090490|ref|XP_008446044.1| (PREDICTED: probable signal peptidase complex subunit 1 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 2.3e-45
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKLAEQLMQ+MLVAFAVVAFLTGYVMGSFR+MILVYAGGVFLTTLITVPNWPFFN
Sbjct: 1   MDWQGQKLAEQLMQIMLVAFAVVAFLTGYVMGSFRMMILVYAGGVFLTTLITVPNWPFFN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           RHPLKWLDPSLAEKYPKPQPQEPVV KKKPAKK
Sbjct: 61  RHPLKWLDPSLAEKYPKPQPQEPVVSKKKPAKK 93

[Close]
BLAST of Cucsa.075620 vs. NCBI nr
Match: gi|703135090|ref|XP_010105796.1| (60S ribosomal protein L17-2 [Morus notabilis])

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-37
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1 

Query: 42  KMDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFF 101
           KMDWQGQKLAEQLMQ+ML+AFAVV F TGYV+GSF+ M+L+YAGGV LTTLIT+PNWPFF
Sbjct: 221 KMDWQGQKLAEQLMQIMLLAFAVVGFATGYVLGSFQTMVLIYAGGVVLTTLITIPNWPFF 280

Query: 102 NRHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           NRHPLKWLDPS AEK+PKPQ Q+PV  KKK +KK
Sbjct: 281 NRHPLKWLDPSEAEKHPKPQRQQPVTSKKKSSKK 314

[Close]
BLAST of Cucsa.075620 vs. NCBI nr
Match: gi|645230885|ref|XP_008222137.1| (PREDICTED: probable signal peptidase complex subunit 1 [Prunus mume])

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-36
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 1 

Query: 43  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 102
           MDWQGQKLAEQLMQ++L+ FAVV FLTGY+ GSF++M+L YAGGV LTTL+TVPNWPFFN
Sbjct: 1   MDWQGQKLAEQLMQILLLVFAVVGFLTGYITGSFQMMVLTYAGGVVLTTLVTVPNWPFFN 60

Query: 103 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 136
           R+PLKWLDPS AEK+PKPQPQ+PV  KKK +KK
Sbjct: 61  RNPLKWLDPSEAEKHPKPQPQQPVSSKKKASKK 93

The following BLAST results are available for this feature:
BLAST of Cucsa.075620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPCS1_ARATH1.3e-2967.74Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425... [more]
SPCS1_BOVIN8.6e-1340.96Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1[more]
SPCS1_PIG1.1e-1240.96Signal peptidase complex subunit 1 OS=Sus scrofa GN=SPCS1 PE=3 SV=1[more]
SPCS1_HUMAN1.5e-1243.66Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4[more]
SPCS1_MOUSE1.5e-1243.66Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=3[more]
BLAST of Cucsa.075620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS09_CUCSA3.7e-4789.62Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589960 PE=4 SV=1[more]
W9S0F4_9ROSA7.1e-3879.7960S ribosomal protein L17-2 OS=Morus notabilis GN=L484_005471 PE=3 SV=1[more]
A0A0S3R184_PHAAN1.1e-3576.34Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G202900 PE=... [more]
A0A166E6S7_DAUCA1.5e-3578.26Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007008 PE=4 SV=1[more]
A0A059D8V0_EUCGR5.6e-3576.60Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B03484 PE=4 ... [more]
BLAST of Cucsa.075620 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G40042.18.8e-3267.74 Microsomal signal peptidase 12 kDa subunit (SPC12)[more]
AT2G22425.17.5e-3167.74 Microsomal signal peptidase 12 kDa subunit (SPC12)[more]
BLAST of Cucsa.075620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196502|gb|KGN51679.1|5.4e-4789.62hypothetical protein Csa_5G589960 [Cucumis sativus][more]
gi|449435059|ref|XP_004135313.1|1.6e-46100.00PREDICTED: probable signal peptidase complex subunit 1 [Cucumis sativus][more]
gi|659090490|ref|XP_008446044.1|2.3e-4596.77PREDICTED: probable signal peptidase complex subunit 1 [Cucumis melo][more]
gi|703135090|ref|XP_010105796.1|1.0e-3779.7960S ribosomal protein L17-2 [Morus notabilis][more]
gi|645230885|ref|XP_008222137.1|1.9e-3677.42PREDICTED: probable signal peptidase complex subunit 1 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009542SPC12
Vocabulary: Cellular Component
TermDefinition
GO:0005787signal peptidase complex
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006465 signal peptide processing
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005787 signal peptidase complex
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.075620.1Cucsa.075620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009542Microsomal signal peptidase 12kDa subunitPANTHERPTHR13202MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNITcoord: 23..135
score: 2.0
IPR009542Microsomal signal peptidase 12kDa subunitPFAMPF06645SPC12coord: 43..112
score: 4.2
NoneNo IPR availableunknownCoilCoilcoord: 133..135
scor
NoneNo IPR availablePANTHERPTHR13202:SF0SIGNAL PEPTIDASE COMPLEX SUBUNIT 1coord: 23..135
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.075620Cla022977Watermelon (97103) v1cgywmB080
Cucsa.075620Csa5G589960Cucumber (Chinese Long) v2cgycuB073
Cucsa.075620MELO3C011874Melon (DHL92) v3.5.1cgymeB077
Cucsa.075620ClCG11G013760Watermelon (Charleston Gray)cgywcgB076
Cucsa.075620CSPI05G21500Wild cucumber (PI 183967)cgycpiB076
Cucsa.075620CmaCh18G007050Cucurbita maxima (Rimu)cgycmaB0125
Cucsa.075620CmaCh04G018300Cucurbita maxima (Rimu)cgycmaB0126
Cucsa.075620CmoCh04G019260Cucurbita moschata (Rifu)cgycmoB0123
Cucsa.075620CmoCh18G006940Cucurbita moschata (Rifu)cgycmoB0122
Cucsa.075620Lsi04G006730Bottle gourd (USVL1VR-Ls)cgylsiB076
Cucsa.075620Cp4.1LG09g05990Cucurbita pepo (Zucchini)cgycpeB0120
Cucsa.075620Cp4.1LG01g16230Cucurbita pepo (Zucchini)cgycpeB0123
Cucsa.075620MELO3C011874.2Melon (DHL92) v3.6.1cgymedB076
Cucsa.075620CsaV3_5G030350Cucumber (Chinese Long) v3cgycucB076
Cucsa.075620Cla97C11G219710Watermelon (97103) v2cgywmbB072
Cucsa.075620Carg14261Silver-seed gourdcarcgyB0285
Cucsa.075620Carg21234Silver-seed gourdcarcgyB0772
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.075620Wax gourdcgywgoB086
Cucsa.075620Wax gourdcgywgoB087
Cucsa.075620Cucumber (Gy14) v1cgycgyB024
Cucsa.075620Cucurbita maxima (Rimu)cgycmaB0123
Cucsa.075620Cucurbita moschata (Rifu)cgycmoB0119
Cucsa.075620Wild cucumber (PI 183967)cgycpiB073
Cucsa.075620Cucumber (Chinese Long) v2cgycuB072
Cucsa.075620Melon (DHL92) v3.5.1cgymeB078
Cucsa.075620Watermelon (Charleston Gray)cgywcgB078
Cucsa.075620Watermelon (97103) v1cgywmB078
Cucsa.075620Cucurbita pepo (Zucchini)cgycpeB0125
Cucsa.075620Bottle gourd (USVL1VR-Ls)cgylsiB077
Cucsa.075620Melon (DHL92) v3.6.1cgymedB077
Cucsa.075620Silver-seed gourdcarcgyB0697
Cucsa.075620Cucumber (Chinese Long) v3cgycucB075
Cucsa.075620Watermelon (97103) v2cgywmbB074