Cucsa.074570 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.074570
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BnaA05g24000D protein
Location	scaffold00785 : 390326 .. 390532 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGCTTCTGTTTTCTGATCCATCAAAAGAGAAAGGTACGACAAACGAAGCCAGTGGCTGGAACCTGCTCCCGGTGCGGACGAGGAGCTCAGGTCGCGGAGATGAAAACCTCCACCACATTTTGCCGGATTCCCATCCACTCCACTTCATGGAAGGCCATCATTTGTTCAACTTGTGGTGCTCTTCTTAAATCCTATAGATAA

mRNA sequence

ATGGTTTGCTTCTGTTTTCTGATCCATCAAAAGAGAAAGGTACGACAAACGAAGCCAGTGGCTGGAACCTGCTCCCGGTGCGGACGAGGAGCTCAGGTCGCGGAGATGAAAACCTCCACCACATTTTGCCGGATTCCCATCCACTCCACTTCATGGAAGGCCATCATTTGTTCAACTTGTGGTGCTCTTCTTAAATCCTATAGATAA

Coding sequence (CDS)

ATGGTTTGCTTCTGTTTTCTGATCCATCAAAAGAGAAAGGTACGACAAACGAAGCCAGTGGCTGGAACCTGCTCCCGGTGCGGACGAGGAGCTCAGGTCGCGGAGATGAAAACCTCCACCACATTTTGCCGGATTCCCATCCACTCCACTTCATGGAAGGCCATCATTTGTTCAACTTGTGGTGCTCTTCTTAAATCCTATAGATAA

Protein sequence

MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTCGALLKSYR*

Homology

[Close]

BLAST of Cucsa.074570 vs. TrEMBL
Match: A0A0A0L6J9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099780 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.7e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC
Sbjct: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60

Query: 61 GALLKSYR 69
          GALLKSYR
Sbjct: 61 GALLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. TrEMBL
Match: A0A087H9U4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G175000 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.6e-24
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ QKRKV+ TKP AGTCSRCGRGA+VA+MKTST FC IPI+  SW+AI+CS C
Sbjct: 1  MVCFCFLVDQKRKVKATKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GALLKSYR 69
          G++LKSYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. TrEMBL
Match: B3H6H2_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At3g15534 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-23
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ QKRKV+ +KP AGTCSRCGRGA+VA+MKTST FC IPI+  SW+AI+CS C
Sbjct: 1  MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GALLKSYR 69
          G++LKSYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. TrEMBL
Match: A0A068UC61_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021173001 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.3e-23
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ QKR VR+ KPVAG+CSRCGRGA VAEM+TST FC IP +  SWKAIICS C
Sbjct: 1  MVCFCFLVDQKRMVRRCKPVAGSCSRCGRGASVAEMRTSTRFCYIPFYWKSWKAIICSFC 60

Query: 61 GALLKSYR 69
          GA+LKSYR
Sbjct: 61 GAVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. TrEMBL
Match: A0A059BMG8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01087 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.3e-23
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ Q+RKVR++KPVAGTCSRCGRGA VA+MKT+T FC +P +  SWKA+IC+ C
Sbjct: 1  MVCFCFLVDQERKVRRSKPVAGTCSRCGRGASVADMKTATRFCYVPFYWKSWKAVICTFC 60

Query: 61 GALLKSYR 69
          GA+LKSYR
Sbjct: 61 GAVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. TAIR10
Match: AT3G15534.1 (AT3G15534.1 unknown protein)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-26
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ QKRKV+ +KP AGTCSRCGRGA+VA+MKTST FC IPI+  SW+AI+CS C
Sbjct: 1  MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GALLKSYR 69
          G++LKSYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. TAIR10
Match: AT1G52855.1 (AT1G52855.1 unknown protein)

HSP 1 Score: 106.7 bits (265), Expect = 5.9e-24
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ Q RKV+++KP AGTCSRCG  A +A+MKTST FC IPI+  SW+A++CS C
Sbjct: 1  MVCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

Query: 61 GALLKSYR 69
          G++LKSYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. TAIR10
Match: AT2G20835.1 (AT2G20835.1 unknown protein)

HSP 1 Score: 96.7 bits (239), Expect = 6.1e-21
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          M  FCFL+ Q++KVR  KP AG CSRCG GA VA+M+TST FC +P +  +WKAI+C  C
Sbjct: 1  MAIFCFLVDQRKKVRGRKPAAGLCSRCGGGAVVADMRTSTRFCGVPFYRKAWKAIVCHIC 60

Query: 61 GALLKSY 68
          GA+LKSY
Sbjct: 61 GAVLKSY 67

[Close]

BLAST of Cucsa.074570 vs. NCBI nr
Match: gi|778676287|ref|XP_011650561.1| (PREDICTED: uncharacterized protein LOC101205611 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC
Sbjct: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60

Query: 61 GALLKSYR 69
          GALLKSYR
Sbjct: 61 GALLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. NCBI nr
Match: gi|659102719|ref|XP_008452279.1| (PREDICTED: uncharacterized protein LOC103493350 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFLI+QKRKVRQTKPVAGTCSRCGRGAQVA+M+TSTTFCRIPIHSTSWKAIICSTC
Sbjct: 1  MVCFCFLINQKRKVRQTKPVAGTCSRCGRGAQVADMETSTTFCRIPIHSTSWKAIICSTC 60

Query: 61 GALLKSYR 69
          GALLKSYR
Sbjct: 61 GALLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. NCBI nr
Match: gi|674246131|gb|KFK38896.1| (hypothetical protein AALP_AA3G175000 [Arabis alpina])

HSP 1 Score: 117.5 bits (293), Expect = 9.4e-24
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ QKRKV+ TKP AGTCSRCGRGA+VA+MKTST FC IPI+  SW+AI+CS C
Sbjct: 1  MVCFCFLVDQKRKVKATKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GALLKSYR 69
          G++LKSYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. NCBI nr
Match: gi|186510105|ref|NP_001118636.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-23
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ QKRKV+ +KP AGTCSRCGRGA+VA+MKTST FC IPI+  SW+AI+CS C
Sbjct: 1  MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GALLKSYR 69
          G++LKSYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of Cucsa.074570 vs. NCBI nr
Match: gi|702364586|ref|XP_010060519.1| (PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis])

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-23
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MVCFCFLIHQKRKVRQTKPVAGTCSRCGRGAQVAEMKTSTTFCRIPIHSTSWKAIICSTC 60
          MVCFCFL+ Q+RKVR++KPVAGTCSRCGRGA VA+MKT+T FC +P +  SWKA+IC+ C
Sbjct: 1  MVCFCFLVDQERKVRRSKPVAGTCSRCGRGASVADMKTATRFCYVPFYWKSWKAVICTFC 60

Query: 61 GALLKSYR 69
          GA+LKSYR
Sbjct: 61 GAVLKSYR 68

The following BLAST results are available for this feature:

BLAST of Cucsa.074570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6J9_CUCSA	7.7e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099780 PE=4 SV=1	[more]
A0A087H9U4_ARAAL	6.6e-24	75.00	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G175000 PE=4 SV=1	[more]
B3H6H2_ARATH	2.5e-23	73.53	Uncharacterized protein OS=Arabidopsis thaliana GN=At3g15534 PE=4 SV=1	[more]
A0A068UC61_COFCA	4.3e-23	76.47	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021173001 PE=4 SV=1	[more]
A0A059BMG8_EUCGR	4.3e-23	72.06	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01087 PE=4 SV=1	[more]

BLAST of Cucsa.074570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15534.1	1.3e-26	73.53	unknown protein	[more]
AT1G52855.1	5.9e-24	66.18	unknown protein	[more]
AT2G20835.1	6.1e-21	61.19	unknown protein	[more]

BLAST of Cucsa.074570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676287\|ref\|XP_011650561.1\|	1.1e-32	100.00	PREDICTED: uncharacterized protein LOC101205611 [Cucumis sativus]	[more]
gi\|659102719\|ref\|XP_008452279.1\|	4.7e-31	95.59	PREDICTED: uncharacterized protein LOC103493350 [Cucumis melo]	[more]
gi\|674246131\|gb\|KFK38896.1\|	9.4e-24	75.00	hypothetical protein AALP_AA3G175000 [Arabis alpina]	[more]
gi\|186510105\|ref\|NP_001118636.1\|	3.6e-23	73.53	uncharacterized protein [Arabidopsis thaliana]	[more]
gi\|702364586\|ref\|XP_010060519.1\|	6.1e-23	72.06	PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.074570.1	Cucsa.074570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	FAMILY NOT NAMED	coord: 1..68 score: 1.2
None	No IPR available	PANTHER	PTHR33320:SF5	SUBFAMILY NOT NAMED	coord: 1..68 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.074570	Csa3G099780	Cucumber (Chinese Long) v2	cgycuB071
Cucsa.074570	MELO3C016544	Melon (DHL92) v3.5.1	cgymeB076
Cucsa.074570	CmaCh16G008010	Cucurbita maxima (Rimu)	cgycmaB0121
Cucsa.074570	MELO3C016544.2	Melon (DHL92) v3.6.1	cgymedB075
Cucsa.074570	CsaV3_3G006060	Cucumber (Chinese Long) v3	cgycucB074
Cucsa.074570	Cla97C10G190550	Watermelon (97103) v2	cgywmbB070

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.074570	Cucurbita pepo (Zucchini)	cgycpeB0118
Cucsa.074570	Cucurbita pepo (Zucchini)	cgycpeB0119
Cucsa.074570	Bottle gourd (USVL1VR-Ls)	cgylsiB074
Cucsa.074570	Silver-seed gourd	carcgyB0262
Cucsa.074570	Silver-seed gourd	carcgyB0740
Cucsa.074570	Cucumber (Chinese Long) v3	cgycucB073
Cucsa.074570	Watermelon (97103) v2	cgywmbB071
Cucsa.074570	Wax gourd	cgywgoB080
Cucsa.074570	Wax gourd	cgywgoB082
Cucsa.074570	Cucumber (Gy14) v1	cgycgyB023
Cucsa.074570	Cucurbita maxima (Rimu)	cgycmaB0122
Cucsa.074570	Cucurbita moschata (Rifu)	cgycmoB0117
Cucsa.074570	Cucurbita moschata (Rifu)	cgycmoB0118
Cucsa.074570	Wild cucumber (PI 183967)	cgycpiB071
Cucsa.074570	Wild cucumber (PI 183967)	cgycpiB072
Cucsa.074570	Cucumber (Chinese Long) v2	cgycuB070
Cucsa.074570	Watermelon (Charleston Gray)	cgywcgB074
Cucsa.074570	Watermelon (Charleston Gray)	cgywcgB075
Cucsa.074570	Watermelon (97103) v1	cgywmB076
Cucsa.074570	Watermelon (97103) v1	cgywmB077