Cucsa.062020 (gene) Cucumber (Gy14) v1

NameCucsa.062020
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAt1g15230/F9L1_18
Locationscaffold00653 : 86554 .. 87240 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAATCCCGAATTAGGGTTTCTCATTCTTCATTATCGTCATGGATGCAGCAGAACATCACAATCCCCAACCAAGTTTCTTCCATCAAATCCTCCCTCCCCGTCTCGAAGACGCCGGCCTCGAGGATTCTGCCCTTCCTCCCGATTCCATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCCGTCAAATCCAGGGCCACCGCCCGTCTTTCACACTCCGACGACGAGGATGATGATGTTCCATGCTCCCCTACTTCCGCACTACCAACCGACGAGGACGCTCCGGCGATTTGCGCGACGAAGAAGGGATTGGAATTGCCCGAATTCGGTAAAGACGAGGTGGTTATTGGGGGAATGGAGGAAAGGAGAGGGAAGGGTTGTGTGGTAGATGGATTGGAAGGGTTGGAGATTGGCGATGATGCCGAGAAGGAGAGCGGGAAAGAGGAGAAGAAGAAACCTGTCTTAGGCGAAGGTTTCGCTTGAAATTGTATAGATGAGTTTAGGTCATAGTTAGAATGGGGGAGGGCTGTTGTTCTTGAAAAGTTATTGTTTTCACGTTGTTTGTGAATAGAGATGAGTTCTTGATTTTATTTTTCACCAAAAGTATTTTTATTTATTGATCGTAGAGCATATATAGGTTTTAATTTAAACTCGAAACTCCAATGGTTCTTTCAACATTCCTAATCACC

mRNA sequence

TCAAATCCCGAATTAGGGTTTCTCATTCTTCATTATCGTCATGGATGCAGCAGAACATCACAATCCCCAACCAAGTTTCTTCCATCAAATCCTCCCTCCCCGTCTCGAAGACGCCGGCCTCGAGGATTCTGCCCTTCCTCCCGATTCCATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCCGTCAAATCCAGGGCCACCGCCCGTCTTTCACACTCCGACGACGAGGATGATGATGTTCCATGCTCCCCTACTTCCGCACTACCAACCGACGAGGACGCTCCGGCGATTTGCGCGACGAAGAAGGGATTGGAATTGCCCGAATTCGGTAAAGACGAGGTGGTTATTGGGGGAATGGAGGAAAGGAGAGGGAAGGGTTGTGTGGTAGATGGATTGGAAGGGTTGGAGATTGGCGATGATGCCGAGAAGGAGAGCGGGAAAGAGGAGAAGAAGAAACCTGTCTTAGGCGAAGGTTTCGCTTGAAATTGTATAGATGAGTTTAGGTCATAGTTAGAATGGGGGAGGGCTGTTGTTCTTGAAAAGTTATTGTTTTCACGTTGTTTGTGAATAGAGATGAGTTCTTGATTTTATTTTTCACCAAAAGTATTTTTATTTATTGATCGTAGAGCATATATAGGTTTTAATTTAAACTCGAAACTCCAATGGTTCTTTCAACATTCCTAATCACC

Coding sequence (CDS)

ATGGATGCAGCAGAACATCACAATCCCCAACCAAGTTTCTTCCATCAAATCCTCCCTCCCCGTCTCGAAGACGCCGGCCTCGAGGATTCTGCCCTTCCTCCCGATTCCATTCGCGAAGCCTTCTTCAAGGCCGCCTCCGCCGTCAAATCCAGGGCCACCGCCCGTCTTTCACACTCCGACGACGAGGATGATGATGTTCCATGCTCCCCTACTTCCGCACTACCAACCGACGAGGACGCTCCGGCGATTTGCGCGACGAAGAAGGGATTGGAATTGCCCGAATTCGGTAAAGACGAGGTGGTTATTGGGGGAATGGAGGAAAGGAGAGGGAAGGGTTGTGTGGTAGATGGATTGGAAGGGTTGGAGATTGGCGATGATGCCGAGAAGGAGAGCGGGAAAGAGGAGAAGAAGAAACCTGTCTTAGGCGAAGGTTTCGCTTGA

Protein sequence

MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEGLEIGDDAEKESGKEEKKKPVLGEGFA*
BLAST of Cucsa.062020 vs. TrEMBL
Match: A0A0A0LDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G483800 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1

Query: 1   MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
           MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD
Sbjct: 1   MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60

Query: 61  DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
           DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG
Sbjct: 61  DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120

Query: 121 LEIGDDAEKESGKEEKKKPVLGEGFA 147
           LEIGDDAEKESGKEEKKKPVLGEGFA
Sbjct: 121 LEIGDDAEKESGKEEKKKPVLGEGFA 146

BLAST of Cucsa.062020 vs. TrEMBL
Match: W9REE4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026204 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-24
Identity = 74/176 (42.05%), Postives = 99/176 (56.25%), Query Frame = 1

Query: 1   MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
           M+AAE         HQILPPRLEDAGLED ALPPDSI+EAF KAA+ VKSRA + L   +
Sbjct: 1   MEAAEEQGR--GLLHQILPPRLEDAGLEDCALPPDSIKEAFIKAATVVKSRAASILYSDE 60

Query: 61  DEDDDVPC------------SPTSALPTDEDAPAICATKKGLELPEFG------------ 120
           DED D  C                 +  + +AP  CAT+ G    E G            
Sbjct: 61  DEDADGDCVKDPWPDAKDRSDVVVGVSPEGEAPGPCATENGTGAAEIGGDDVAVGGGDEL 120

Query: 121 KDEVVIGGMEERRGKGCVVDGLEGLEIGDDA-------EKESGKEEKKKPVLGEGF 146
           +D+VV+G  +E+ GK C V+GL+GLEIGD+        E++ G+E++ +P+L  G+
Sbjct: 121 EDKVVVGSEDEKGGKDC-VEGLQGLEIGDEKKKNGGGDEEDKGEEDEDRPILVGGY 173

BLAST of Cucsa.062020 vs. TrEMBL
Match: A0A067KYC4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06291 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-22
Identity = 77/168 (45.83%), Postives = 98/168 (58.33%), Query Frame = 1

Query: 16  QILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDEDDD---------- 75
           +ILPPRLEDAGLE+ ALPPDSI+EAFFKAASAVKSRAT     +DDE+ D          
Sbjct: 15  RILPPRLEDAGLEECALPPDSIKEAFFKAASAVKSRAT--YIFTDDEEGDCVQDPWPEAK 74

Query: 76  ------VPCSPTSALP-------TDEDAPAICATKKGLELPEFGKDEVVIGGM---EERR 135
                 +  SPTSA+P       T+++AP  C  +KG+   E G D+VV+GG    E  +
Sbjct: 75  DLSDEVIAGSPTSAIPDALVGVDTEKEAPGSCMVEKGVV--ECG-DKVVVGGGDVGEREK 134

Query: 136 GKGCVVDGLEGLEIGDDAEKESG-----------KEEKKKPVLGEGFA 147
             GC+ D L GL+IGD  E   G           ++E ++PVL EGFA
Sbjct: 135 ENGCLNDELTGLQIGDKKESNGGATGGNGYEEQKEKEGERPVLTEGFA 177

BLAST of Cucsa.062020 vs. TrEMBL
Match: A0A118JVC0_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_004973 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-22
Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = 1

Query: 12  SFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDEDDDVPC--- 71
           S   +I PPRLEDAGLED ALPPDSI+EAF KAA+AV+S    R+ H+ D++ +  C   
Sbjct: 56  SLLDKIQPPRLEDAGLEDCALPPDSIQEAFLKAATAVRS----RIFHASDDESEGDCIND 115

Query: 72  ------SPTSAL---PTDEDAPAICATKKGLELPEFGKDEVVIGGME------------E 131
                 SP   L    T+ED P  CA KKG ELPE   DEVV GG E            +
Sbjct: 116 PWPTIGSPVDKLVGITTEEDPPGACAPKKGGELPEMTGDEVVTGGREGIPDKVVEPEVPD 175

Query: 132 RRGKGCVVDGLEGLEIGD---------DAEKESGKEEKKK 139
            R K C VDGL+GL+IG+         + EKES K+E+++
Sbjct: 176 EREKSC-VDGLQGLKIGERKNIGGKKSETEKESKKDEEEE 210

BLAST of Cucsa.062020 vs. TrEMBL
Match: A0A164URG4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026329 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 73/157 (46.50%), Postives = 93/157 (59.24%), Query Frame = 1

Query: 14  FHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDEDDDV------P 73
           FH+ILPPRLEDAGLED ALPPDSIREAF KAASAV+S   + LS SDDEDD        P
Sbjct: 9   FHKILPPRLEDAGLEDCALPPDSIREAFLKAASAVRS---SLLSQSDDEDDSTCVHNPWP 68

Query: 74  CSPTSA-----LPTDEDAPAICATKKGLELPEFGKDEVV-------IGGMEERRGKG--- 133
            +  SA     + ++   P  CA +KG E+PE   D+VV       +  ++E  G G   
Sbjct: 69  STGDSADALVGILSESSPPGSCAGRKGGEVPENLGDKVVGGVSDDDVASVDEVVGIGDVE 128

Query: 134 ---CVVDGLEGLEIGDDAEKESGKEEKKKPVLGEGFA 147
              C V+ L+GL IG+  +K+   +E  KP L EG+A
Sbjct: 129 EGECCVEELKGLGIGEKTKKKDDAKEPDKPGLTEGYA 162

BLAST of Cucsa.062020 vs. TAIR10
Match: AT1G15230.1 (AT1G15230.1 unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13
Identity = 57/147 (38.78%), Postives = 80/147 (54.42%), Query Frame = 1

Query: 17  ILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDED---DDVPCSPTSA 76
           ILPP L DAGLED ALPP+SI+EAF KAA+AVKSRA +   H +++    D +P +    
Sbjct: 14  ILPPALADAGLEDCALPPESIQEAFRKAANAVKSRAASIFDHEEEDGCLADPIPETADKI 73

Query: 77  L--PTDEDAPAICATKKGLELPEFGKD--EVVIGGMEERRGKGCV----VDGL-----EG 136
           +    +E     C   KG+E     K   ++V+       G+G      VDGL     EG
Sbjct: 74  IVGGDNERDTGPCLAGKGIEKLAESKQAGDLVVA------GEGEEGKSCVDGLKDLDVEG 133

Query: 137 LEIGDDAEKES--GKEEKKKPVLGEGF 146
           +E   + + +S   +EE+ KP+L EGF
Sbjct: 134 IERSSEKKDQSDEDEEEEMKPILVEGF 154

BLAST of Cucsa.062020 vs. NCBI nr
Match: gi|778681386|ref|XP_011651498.1| (PREDICTED: uncharacterized protein LOC105434906 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 4.9e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1

Query: 1   MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
           MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD
Sbjct: 1   MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60

Query: 61  DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120
           DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG
Sbjct: 61  DEDDDVPCSPTSALPTDEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKGCVVDGLEG 120

Query: 121 LEIGDDAEKESGKEEKKKPVLGEGFA 147
           LEIGDDAEKESGKEEKKKPVLGEGFA
Sbjct: 121 LEIGDDAEKESGKEEKKKPVLGEGFA 146

BLAST of Cucsa.062020 vs. NCBI nr
Match: gi|659093392|ref|XP_008447517.1| (PREDICTED: uncharacterized protein LOC103489947 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 9.2e-61
Identity = 128/156 (82.05%), Postives = 135/156 (86.54%), Query Frame = 1

Query: 1   MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
           MDAAEHHNPQP FF QILPPRLEDAGLED ALPPDSIREAFFKAASAVKSRATA LS  D
Sbjct: 1   MDAAEHHNPQPPFFDQILPPRLEDAGLEDPALPPDSIREAFFKAASAVKSRATALLSPDD 60

Query: 61  DEDDDVPCSPTSALPT--------DEDAPAICATKKGLELPEFGKDEVVIGGMEERRGKG 120
           D++DD P SPTS LPT        DEDAPAICAT+KGL+LPEFGKDEVVIGGMEERRGK 
Sbjct: 61  DDEDD-PWSPTSTLPTDIVTGILPDEDAPAICATRKGLKLPEFGKDEVVIGGMEERRGKA 120

Query: 121 CVVDGLEGLEIGDDAEKE--SGKEEKKKPVLGEGFA 147
           CVVDGLEGLEIGD+AEKE  SGKEE +KP+LGEGFA
Sbjct: 121 CVVDGLEGLEIGDEAEKEKKSGKEE-EKPILGEGFA 154

BLAST of Cucsa.062020 vs. NCBI nr
Match: gi|703104693|ref|XP_010098072.1| (hypothetical protein L484_026204 [Morus notabilis])

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 74/176 (42.05%), Postives = 99/176 (56.25%), Query Frame = 1

Query: 1   MDAAEHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSD 60
           M+AAE         HQILPPRLEDAGLED ALPPDSI+EAF KAA+ VKSRA + L   +
Sbjct: 1   MEAAEEQGR--GLLHQILPPRLEDAGLEDCALPPDSIKEAFIKAATVVKSRAASILYSDE 60

Query: 61  DEDDDVPC------------SPTSALPTDEDAPAICATKKGLELPEFG------------ 120
           DED D  C                 +  + +AP  CAT+ G    E G            
Sbjct: 61  DEDADGDCVKDPWPDAKDRSDVVVGVSPEGEAPGPCATENGTGAAEIGGDDVAVGGGDEL 120

Query: 121 KDEVVIGGMEERRGKGCVVDGLEGLEIGDDA-------EKESGKEEKKKPVLGEGF 146
           +D+VV+G  +E+ GK C V+GL+GLEIGD+        E++ G+E++ +P+L  G+
Sbjct: 121 EDKVVVGSEDEKGGKDC-VEGLQGLEIGDEKKKNGGGDEEDKGEEDEDRPILVGGY 173

BLAST of Cucsa.062020 vs. NCBI nr
Match: gi|470134127|ref|XP_004302907.1| (PREDICTED: uncharacterized protein LOC101294382 [Fragaria vesca subsp. vesca])

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 78/161 (48.45%), Postives = 96/161 (59.63%), Query Frame = 1

Query: 5   EHHNPQPSFFHQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDEDD 64
           E  + QP   H+I PPRLEDAGLED ALPPDSI+EAF KAA+AVKSRAT+  +  DDEDD
Sbjct: 2   EATDEQPGLLHRIHPPRLEDAGLEDCALPPDSIKEAFLKAATAVKSRATSIFTSDDDEDD 61

Query: 65  DV----PCSPTSALPTDEDA-PAICATKKGLELPEFGKDEVVIGGMEERRGKGCV----- 124
            V       P + +  + DA P  C  +KG  + E G DEVV+GG EE R K  V     
Sbjct: 62  CVDDPWEARPDAVVGAETDANPGGCGGEKGGAV-EVGGDEVVVGGEEEMRDKVIVGGEDV 121

Query: 125 ---------VDGLEGLEIGDDAEKESGKEEKKKPVLGEGFA 147
                    VDGL GLEIGD  +K+  K+  + P+L  G+A
Sbjct: 122 REVGGDKACVDGLVGLEIGDKNKKK--KDNDEGPILVGGYA 159

BLAST of Cucsa.062020 vs. NCBI nr
Match: gi|1000973650|ref|XP_015572838.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC8274490 [Ricinus communis])

HSP 1 Score: 119.0 bits (297), Expect = 6.9e-24
Identity = 77/166 (46.39%), Postives = 99/166 (59.64%), Query Frame = 1

Query: 15  HQILPPRLEDAGLEDSALPPDSIREAFFKAASAVKSRATARLSHSDDEDDDVPCS----- 74
           ++ILPPRLEDAGLED ALPPDSI+EAFFKAASAVKSR T+ L+ SDDED++  C      
Sbjct: 6   NEILPPRLEDAGLEDCALPPDSIKEAFFKAASAVKSRVTSILT-SDDEDEETDCVQDPWP 65

Query: 75  ------------PTSALP-------TDEDAPAICATKKGLELPEFGKDEVVIGG----ME 134
                       P SA+P       +  DAP  C  +KG  + E GKD+VV+ G     E
Sbjct: 66  DEAKEFVDGAPWPESAVPDSLTGVESGADAPGPCVAEKGGGVVEEGKDKVVVVGGDDVKE 125

Query: 135 ERRGKGCVVDGLEGLEIGDDAEK-------ESGKEEKKKPVLGEGF 146
             + K  V +GL+GL+IG + +K       E  KEE ++P+L EGF
Sbjct: 126 REKEKERVNEGLKGLKIGGEKKKGENGGDXEEEKEEGERPILTEGF 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LDD6_CUCSA3.4e-78100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G483800 PE=4 SV=1[more]
W9REE4_9ROSA1.7e-2442.05Uncharacterized protein OS=Morus notabilis GN=L484_026204 PE=4 SV=1[more]
A0A067KYC4_JATCU2.6e-2245.83Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06291 PE=4 SV=1[more]
A0A118JVC0_CYNCS4.5e-2245.63Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
A0A164URG4_DAUCA1.3e-2146.50Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026329 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G15230.12.0e-1338.78 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778681386|ref|XP_011651498.1|4.9e-78100.00PREDICTED: uncharacterized protein LOC105434906 [Cucumis sativus][more]
gi|659093392|ref|XP_008447517.1|9.2e-6182.05PREDICTED: uncharacterized protein LOC103489947 [Cucumis melo][more]
gi|703104693|ref|XP_010098072.1|2.4e-2442.05hypothetical protein L484_026204 [Morus notabilis][more]
gi|470134127|ref|XP_004302907.1|2.4e-2448.45PREDICTED: uncharacterized protein LOC101294382 [Fragaria vesca subsp. vesca][more]
gi|1000973650|ref|XP_015572838.1|6.9e-2446.39PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC8274490 [Ricinus comm... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.062020.1Cucsa.062020.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36713FAMILY NOT NAMEDcoord: 5..146
score: 7.9

The following gene(s) are paralogous to this gene:

None