Cucsa.061990 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.061990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Photosystem I reaction center subunit VI
Location	scaffold00653 : 74010 .. 75969 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATCCAATCACGAAACCCAAAATCCCATTTCAACCCTCACTTCCTCCCTCACCCTCAGTTTGCAACTCCAAATTTGTTCCCTTCCAGACCAAACCCACGCAACTATGGCTTCCTTAGCAACATTGGCCGCCGTTCAACCCGTCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGACCTTCAGACCCAAAAACTTCAAGTACCAAAATCATTCACCAAACACCTCTCTATTTTCCTTTCTTTTTtCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTttCTTTTTCTTTTTTTtATTTTTtATTTAAAACCTGTGGCTTTTTGTTTTTCTtGTTTTTGTTACTCTGTGTTTCAGGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGCGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGGTTTCTAACTCTTTGTATTGCTTTAATGAACTTCAATCATTTTCGTTGTGTATGGAAGTGATTTTAAATTCAAGAGCGTTTTGAAAACTGAGTTGATATTGTAGTATGTTGATTTTAATAGTTAGTATTTGAAGTTGTAGCTATTTTAGATCGGATGGGAAGTAGTAAACATTGTAGCAAAGAGAGAAACAAAGGATGAGTAAGAAATATTTAACACCGCAGGAAAGATCGATATAAAATAGTAACATAGTAGTTAATTGTAAGTTATAATCGTTTGAAACACCCATTATTACCGGAAATATGGACTGAGCTCTAATAGCAAACACCCGCTACGTAGTTTATGTAAAAATACTTCAATTATAATCACTTTTTTAGTGCTTTCCTAACAAATATGTGAAAAGTTCTTTATAAGTTCTTCATAAAGAATATCTTGTATTAGCATTTTTAACACAATTCAGTCCAATTATAATGATTTTGAGGAGGGAAGTACTTTTGAGTAAGGCACAAGTGATTTGGCAGGGGTTGAAGTAAAGGTTTAGATTGCGACTGACTTATTTTGGTACATTTTGCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCGTTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAATCCGCTTTTGAATCTTTCTCGTTTTCTGGGGTTTTTGTTGTATGTAAATCTTCTCTCTTAACTCTCCTTCCCAGTATGTTTCAAATATACCGTATAGGAGTGTTATTTGAGCAATTGTTATTATGTGATGAATGTACTTTTACAAAGTGGTCTTGCCAGTTTCTTTGAAAGACTGATAAAGATATGGGTTAAAAAGACTAA

mRNA sequence

GAAAATCCAATCACGAAACCCAAAATCCCATTTCAACCCTCACTTCCTCCCTCACCCTCAGTTTGCAACTCCAAATTTGTTCCCTTCCAGACCAAACCCACGCAACTATGGCTTCCTTAGCAACATTGGCCGCCGTTCAACCCGTCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGACCTTCAGACCCAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGCGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCGTTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAATCCGCTTTTGAATCTTTCTCGTTTTCTGGGGTTTTTGTTGTATGTAAATCTTCTCTCTTAACTCTCCTTCCCAGTATGTTTCAAATATACCGTATAGGAGTGTTATTTGAGCAATTGTTATTATGTGATGAATGTACTTTTACAAAGTGGTCTTGCCAGTTTCTTTGAAAGACTGATAAAGATATGGGTTAAAAAGACTAA

Coding sequence (CDS)

ATGGCTTCCTTAGCAACATTGGCCGCCGTTCAACCCGTCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGACCTTCAGACCCAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGCGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCGTTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAA

Protein sequence

MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI*

Homology

[Close]

BLAST of Cucsa.061990 vs. Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-62
Identity = 114/144 (79.17%), Postives = 129/144 (89.58%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP T+KGL GSS+AG KL ++P+RQ+F+  N ++GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           AP DVLPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-61
Identity = 117/145 (80.69%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP   VKGLGGSSLAGAKL ++PSRQ+F+ K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Cucsa.061990 vs. Swiss-Prot
Match: PSAH_BRACM (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris GN=PSAH PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-61
Identity = 117/145 (80.69%), Postives = 131/145 (90.34%), Query Frame = 1


Query: 1   MASLATLAAVQPVT-VKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP + VKGLGGSSL GAKL ++PSRQ+F+PK+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           ++  DVLPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

[Close]

BLAST of Cucsa.061990 vs. Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.3e-61
Identity = 114/145 (78.62%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P   +KGLGGSSLAGAKL ++PSR +F+PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Cucsa.061990 vs. Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-54
Identity = 109/146 (74.66%), Postives = 121/146 (82.88%), Query Frame = 1


Query: 4   LATLAAVQPVTVKGLGGSSLAGAKLPLRPS-----RQTFRPKNFKAGAVVAKYGDKSVYF 63
           +A+L AVQPV VKGL GSS++G KL +RPS     R T RP+     AVVAKYG+KSVYF
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPR----AAVVAKYGEKSVYF 60

Query: 64  DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFS 123
           DLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFLLLGGG+ +AY S
Sbjct: 61  DLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVS 120

Query: 124 ATAPDDVLPIKKGPQLPPKLGPRGKI 145
           A+A  D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 ASASPDLLPIKKGPQLPPTPGPRGKI 142

[Close]

BLAST of Cucsa.061990 vs. TrEMBL
Match: A0A0A0LAW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G483830 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. TrEMBL
Match: A0A067ESN4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032245mg PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.3e-69
Identity = 129/144 (89.58%), Postives = 139/144 (96.53%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQP T+KGLGGSSLAG KL ++P+RQ+FRPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. TrEMBL
Match: V4RYS6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026722mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-68
Identity = 129/144 (89.58%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQPVT+KGLGGSSLAG KL ++P+RQ  RPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. TrEMBL
Match: A9PG57_POPTR (Photosystem I 11K family protein OS=Populus trichocarpa GN=POPTR_0003s05110g PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.5e-65
Identity = 123/144 (85.42%), Postives = 134/144 (93.06%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLAT AAVQP T+KGLGGSSL+G KL ++PSRQ  RPK+ ++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLATFAAVQPATIKGLGGSSLSGTKLHVKPSRQGLRPKSLRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGK+
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKL 144

[Close]

BLAST of Cucsa.061990 vs. TrEMBL
Match: A0A151QT94_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_045689 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-65
Identity = 123/144 (85.42%), Postives = 132/144 (91.67%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLA+LA VQP TV GL GSSL G KL  +PSRQ+FRP NF++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLASLAVVQPSTVNGLAGSSLTGTKLSFKPSRQSFRPNNFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           ED+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+TLAYFSAT
Sbjct: 61  EDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. TAIR10
Match: AT1G52230.1 (AT1G52230.1 photosystem I subunit H2)

HSP 1 Score: 236.9 bits (603), Expect = 7.9e-63
Identity = 117/145 (80.69%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP   VKGLGGSSLAGAKL ++PSRQ+F+ K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Cucsa.061990 vs. TAIR10
Match: AT3G16140.1 (AT3G16140.1 photosystem I subunit H-1)

HSP 1 Score: 235.0 bits (598), Expect = 3.0e-62
Identity = 114/145 (78.62%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P   +KGLGGSSLAGAKL ++PSR +F+PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Cucsa.061990 vs. NCBI nr
Match: gi|778681396|ref|XP_011651500.1| (PREDICTED: photosystem I reaction center subunit VI, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. NCBI nr
Match: gi|659093383|ref|XP_008447512.1| (PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. NCBI nr
Match: gi|568822403|ref|XP_006465620.1| (PREDICTED: photosystem I reaction center subunit VI-2, chloroplastic [Citrus sinensis])

HSP 1 Score: 268.1 bits (684), Expect = 9.1e-69
Identity = 129/144 (89.58%), Postives = 139/144 (96.53%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQP T+KGLGGSSLAG KL ++P+RQ+FRPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. NCBI nr
Match: gi|567868661|ref|XP_006426953.1| (hypothetical protein CICLE_v10026722mg [Citrus clementina])

HSP 1 Score: 266.9 bits (681), Expect = 2.0e-68
Identity = 129/144 (89.58%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQPVT+KGLGGSSLAG KL ++P+RQ  RPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cucsa.061990 vs. NCBI nr
Match: gi|950976924|ref|XP_014501387.1| (PREDICTED: photosystem I reaction center subunit VI-2, chloroplastic-like [Vigna radiata var. radiata])

HSP 1 Score: 256.5 bits (654), Expect = 2.7e-65
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 1


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLA+LA VQP TVKGL GSSLAG KL  RPS+++FR KNF++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLASLAVVQPSTVKGLAGSSLAGTKLTFRPSQKSFRAKNFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

The following BLAST results are available for this feature:

BLAST of Cucsa.061990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAH_SPIOL	1.7e-62	79.17	Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAH2_ARATH	1.4e-61	80.69	Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thalian...	[more]
PSAH_BRACM	1.4e-61	80.69	Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris G...	[more]
PSAH1_ARATH	5.3e-61	78.62	Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thalian...	[more]
PSAH_ORYSI	1.7e-54	74.66	Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. i...	[more]

BLAST of Cucsa.061990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW4_CUCSA	1.2e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G483830 PE=4 SV=1	[more]
A0A067ESN4_CITSI	6.3e-69	89.58	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032245mg PE=4 SV=1	[more]
V4RYS6_9ROSI	1.4e-68	89.58	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026722mg PE=4 SV=1	[more]
A9PG57_POPTR	2.5e-65	85.42	Photosystem I 11K family protein OS=Populus trichocarpa GN=POPTR_0003s05110g PE=...	[more]
A0A151QT94_CAJCA	4.2e-65	85.42	Uncharacterized protein OS=Cajanus cajan GN=KK1_045689 PE=4 SV=1	[more]

BLAST of Cucsa.061990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52230.1	7.9e-63	80.69	photosystem I subunit H2	[more]
AT3G16140.1	3.0e-62	78.62	photosystem I subunit H-1	[more]

BLAST of Cucsa.061990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778681396\|ref\|XP_011651500.1\|	1.7e-75	100.00	PREDICTED: photosystem I reaction center subunit VI, chloroplastic-like [Cucumis...	[more]
gi\|659093383\|ref\|XP_008447512.1\|	3.2e-74	97.92	PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo...	[more]
gi\|568822403\|ref\|XP_006465620.1\|	9.1e-69	89.58	PREDICTED: photosystem I reaction center subunit VI-2, chloroplastic [Citrus sin...	[more]
gi\|567868661\|ref\|XP_006426953.1\|	2.0e-68	89.58	hypothetical protein CICLE_v10026722mg [Citrus clementina]	[more]
gi\|950976924\|ref\|XP_014501387.1\|	2.7e-65	86.81	PREDICTED: photosystem I reaction center subunit VI-2, chloroplastic-like [Vigna...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004928	PSI_PsaH

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.061990.1	Cucsa.061990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PFAM	PF03244	PSI_PsaH	coord: 7..144 score: 1.4
None	No IPR available	PANTHER	PTHR34787	FAMILY NOT NAMED	coord: 2..144 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.061990	Cla012670	Watermelon (97103) v1	cgywmB054
Cucsa.061990	Csa3G483830	Cucumber (Chinese Long) v2	cgycuB048
Cucsa.061990	MELO3C012971	Melon (DHL92) v3.5.1	cgymeB052
Cucsa.061990	ClCG07G013150	Watermelon (Charleston Gray)	cgywcgB054
Cucsa.061990	CSPI03G24260	Wild cucumber (PI 183967)	cgycpiB048
Cucsa.061990	CmaCh01G001070	Cucurbita maxima (Rimu)	cgycmaB0090
Cucsa.061990	Lsi07G005080	Bottle gourd (USVL1VR-Ls)	cgylsiB052
Cucsa.061990	Cp4.1LG02g14500	Cucurbita pepo (Zucchini)	cgycpeB0085
Cucsa.061990	Cp4.1LG03g14070	Cucurbita pepo (Zucchini)	cgycpeB0086
Cucsa.061990	MELO3C012971.2	Melon (DHL92) v3.6.1	cgymedB051
Cucsa.061990	CsaV3_3G025000	Cucumber (Chinese Long) v3	cgycucB050
Cucsa.061990	Cla97C07G139940	Watermelon (97103) v2	cgywmbB052
Cucsa.061990	Bhi01G002639	Wax gourd	cgywgoB054
Cucsa.061990	Carg06475	Silver-seed gourd	carcgyB0140
Cucsa.061990	Carg04264	Silver-seed gourd	carcgyB0234

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.061990	Cucumber (Chinese Long) v3	cgycucB051
Cucsa.061990	Watermelon (97103) v2	cgywmbB053
Cucsa.061990	Wax gourd	cgywgoB055
Cucsa.061990	Cucumber (Gy14) v1	cgycgyB013
Cucsa.061990	Cucurbita maxima (Rimu)	cgycmaB0089
Cucsa.061990	Cucurbita maxima (Rimu)	cgycmaB0091
Cucsa.061990	Cucurbita moschata (Rifu)	cgycmoB0084
Cucsa.061990	Cucurbita moschata (Rifu)	cgycmoB0085
Cucsa.061990	Cucurbita moschata (Rifu)	cgycmoB0086
Cucsa.061990	Wild cucumber (PI 183967)	cgycpiB049
Cucsa.061990	Cucumber (Chinese Long) v2	cgycuB049
Cucsa.061990	Watermelon (Charleston Gray)	cgywcgB053
Cucsa.061990	Watermelon (97103) v1	cgywmB053
Cucsa.061990	Silver-seed gourd	carcgyB0836