Cp4.1LG02g14500 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g14500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhotosystem I reaction center subunit VI
LocationCp4.1LG02 : 13888987 .. 13891088 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATATCAACAAGGATAGCCTTATCCACTTCCATCCAACGTGGAACCTCCTAAATGATACTCAAAATTCTCTTCCAAGATCCCATTTTGCCACGTGTCAAAACAAGATCCAATCACACGCCATTTGAACCCTCCACCTCCTATCTCAACCTGGCAACTCCAAGTTCCTTCCTTTTCCAACCAAGAAGGCAACAATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCTCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGTACCAAAATCAATCACCAAAAATGCTTTTATTATTAGTTTGGAACTGTATGAAACTTGTGGGGTTTTTTTGTTTTCAGGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTAATTTAGAGGACTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGGTTTGTGATTCATTGCTTTGCTTTAATGAATTTGAAGAATGGATCAGAACAGAACAGACTAATTCTTAGCTTTTTGGATTGAACTTGCTATTGACTTATTTTGGTACATTTTATAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTCTTGCTCAAGTTCTTGCTACTTGGTGGTGGTTCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCGCGTGGCAAGATCTAATTCGCTTTCGAATCGGGTTTCTGTTGTATGTAAATTTTCTCTCTTAACTCTCCTACCAGCTATGTTTCAAAGATACCATTTGGGAGTGTTATTTGAGCCATTGTTATTATGTGATCAATGTGGTTTTGCCAGTTTGCCCTGCAGAAGAAACAAATTCAAAATACTCCAAATACTCCAAAACCAATTACTTTTATTCATCCTTCATATTTACAACAGGAATGAATTGAATGGATTTGGTAATTACAGCTCTAAAGAGAAATTCAGTCAAAAGGAGGTTAAGCTTAACCGTGTTTTTCTGCTGTGCTGTCTCCCCCTTCTCTAAAACCTTATGCTAGCTTTTTGTTCTTATTTTTCGTCTTCCCTTATGAACTCGAGTCAATGTCGTGCCACGGGGCTCTTCGGACCGCCGCTGATGTTCTCGAGGTACGAGACCAACTTATTGTTAGTCACTATGTTTTGAAGCTTCTGCACAGGCTTCAGTTCACCTTCTGCGGATAAGTTGTCTGAATTCCCTGTTGGTGATTCCTTCTTTGTCTCATTATCAGAAATATCAGGACCCCAATTCATGAAATCCAATAATGTCATTGAAGTAAGTGTCTCGGAAGCATTTTGTGTCTCTTCTCCTGGTGAAGGCTTATCCACCCCCGACGATACCGGGGTTTCCCTTGAAGGGCTCTTACTCGAGGGCTGTGTCGGATTTTGAGCGAGATAATCCGCGTACAGTACATCCTCAATCCTTGACATCACAGTGAAGGCTAAGCTTTCAAGGATTCTAGAGTAACTCTCTAGAACAGCCTGTCCAATATCCTAAACATCCAAAGAACCAACATAACATTAGAGAGTGCTGCAAACAGAAGTTTTCTAGGATTCCATCCACCCTTTTCAAGACATGAAACATAGTACTTTCCAAAAACAAAAACAAAAATGTTGTGTACCCTATTGTATTGAATTTTGCTAATGTCTAATGCTGATTGAGGAGTGCCTGGGAAACGATGCTTGAGGATGATTAAAATTGTTTCCGCTCGCTCCTCGAAAAGCTCTCGCTTCTCCAAGCTTACAGCCGAGCCCCAAGCAGATTTTCCATCTTTCTGGTTCATCTTCCTCTTCCATATCACAATAGAAGCTTCAATTCTATCCTTGAGATCTAGGATCTTGTGCTCTGAAGATAAGTCCAATGTAGACAGAAATTGATCCGGGTCGAAGAATTCGACCGTTATGTTTCTGTACACAGAGTCTCCAAGGCTTTCCCTCCCATTCTGCAAACGAATATTCAGTCACGA

mRNA sequence

CATATCAACAAGGATAGCCTTATCCACTTCCATCCAACGTGGAACCTCCTAAATGATACTCAAAATTCTCTTCCAAGATCCCATTTTGCCACGTGTCAAAACAAGATCCAATCACACGCCATTTGAACCCTCCACCTCCTATCTCAACCTGGCAACTCCAAGTTCCTTCCTTTTCCAACCAAGAAGGCAACAATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCTCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTAATTTAGAGGACTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTCTTGCTCAAGTTCTTGCTACTTGGTGGTGGTTCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCGCGTGGCAAGATCTAATTCGCTTTCGAATCGGGTTTCTGTTGTATGTAAATTTTCTCTCTTAACTCTCCTACCAGCTATGTTTCAAAGATACCATTTGGGAGTGTTATTTGAGCCATTGTTATTATGTGATCAATGTGGTTTTGCCAGTTTGCCCTGCAGAAGAAACAAATTCAAAATACTCCAAATACTCCAAAACCAATTACTTTTATTCATCCTTCATATTTACAACAGGAATGAATTGAATGGATTTGGTAATTACAGCTCTAAAGAGAAATTCAGTCAAAAGGAGGTTAAGCTTAACCGTGTTTTTCTGCTGTGCTGTCTCCCCCTTCTCTAAAACCTTATGCTAGCTTTTTGTTCTTATTTTTCGTCTTCCCTTATGAACTCGAGTCAATGTCGTGCCACGGGGCTCTTCGGACCGCCGCTGATGTTCTCGAGGTACGAGACCAACTTATTGTTAGTCACTATGTTTTGAAGCTTCTGCACAGGCTTCAGTTCACCTTCTGCGGATAAGTTGTCTGAATTCCCTGTTGGTGATTCCTTCTTTGTCTCATTATCAGAAATATCAGGACCCCAATTCATGAAATCCAATAATGTCATTGAAGTAAGTGTCTCGGAAGCATTTTGTGTCTCTTCTCCTGGTGAAGGCTTATCCACCCCCGACGATACCGGGGTTTCCCTTGAAGGGCTCTTACTCGAGGGCTGTGTCGGATTTTGAGCGAGATAATCCGCGTACAGTACATCCTCAATCCTTGACATCACAGTGAAGGCTAAGCTTTCAAGGATTCTAGAGTAACTCTCTAGAACAGCCTGTCCAATATCCTAAACATCCAAAGAACCAACATAACATTAGAGAGTGCTGCAAACAGAAGTTTTCTAGGATTCCATCCACCCTTTTCAAGACATGAAACATAGTACTTTCCAAAAACAAAAACAAAAATGTTGTGTACCCTATTGTATTGAATTTTGCTAATGTCTAATGCTGATTGAGGAGTGCCTGGGAAACGATGCTTGAGGATGATTAAAATTGTTTCCGCTCGCTCCTCGAAAAGCTCTCGCTTCTCCAAGCTTACAGCCGAGCCCCAAGCAGATTTTCCATCTTTCTGGTTCATCTTCCTCTTCCATATCACAATAGAAGCTTCAATTCTATCCTTGAGATCTAGGATCTTGTGCTCTGAAGATAAGTCCAATGTAGACAGAAATTGATCCGGGTCGAAGAATTCGACCGTTATGTTTCTGTACACAGAGTCTCCAAGGCTTTCCCTCCCATTCTGCAAACGAATATTCAGTCACGA

Coding sequence (CDS)

ATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCTCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTAATTTAGAGGACTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTCTTGCTCAAGTTCTTGCTACTTGGTGGTGGTTCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCGCGTGGCAAGATCTAA

Protein sequence

MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Homology
[Close]
BLAST of Cp4.1LG02g14500 vs. Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-60
Identity = 113/144 (78.47%), Postives = 127/144 (88.19%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQP  +KGL GSS+AGTKL ++P+RQ+    N ++GA+VAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           AP DVLPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-59
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 1 

Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MAS AT+AAVQP  AVKGLGGSSLAG KL ++PSRQ+   K+ +AGAVVAKYGDKSVYF+
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]
BLAST of Cp4.1LG02g14500 vs. Swiss-Prot
Match: PSAH_BRACM (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris GN=PSAH PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-59
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 1 

Query: 1   MASLATLAAVQPV-AVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MAS AT+AAVQP  AVKGLGGSSL G KL ++PSRQ+  PK+ +AGAVVAKYGDKSVYF+
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           ++  DVLPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

[Close]
BLAST of Cp4.1LG02g14500 vs. Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.5e-59
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 1 

Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MASLAT+AAV+P  A+KGLGGSSLAG KL ++PSR +  PK+ +A  VVAKYGDKSVYF+
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]
BLAST of Cp4.1LG02g14500 vs. Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-53
Identity = 109/143 (76.22%), Postives = 123/143 (86.01%), Query Frame = 1 

Query: 4   LATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTL--TPKNFKAGAVVAKYGDKSVYFNLE 63
           +A+L AVQPVAVKGL GSS++G KL +RPS + L  T +  +A AVVAKYG+KSVYF+LE
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA-AVVAKYGEKSVYFDLE 60

Query: 64  DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSATA 123
           D+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFLLLGGGS +AY SA+A
Sbjct: 61  DIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASA 120

Query: 124 PDDVLPIKKGPQLPPKLGPRGKI 145
             D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 SPDLLPIKKGPQLPPTPGPRGKI 142

[Close]
BLAST of Cp4.1LG02g14500 vs. TrEMBL
Match: A0A0A0LAW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G483830 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.3e-71
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPV VKGLGGSSLAG KLPLRPSRQT  PKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. TrEMBL
Match: V4RYS6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026722mg PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-67
Identity = 129/144 (89.58%), Postives = 138/144 (95.83%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLAT+AAVQPV +KGLGGSSLAGTKL ++P+RQ L PK+FKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. TrEMBL
Match: A0A067ESN4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032245mg PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.2e-66
Identity = 127/144 (88.19%), Postives = 137/144 (95.14%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLAT+AAVQP  +KGLGGSSLAGTKL ++P+RQ+  PK+FKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. TrEMBL
Match: A0A0L9T9W4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan406s017300 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.4e-65
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQP A+ GL GSSL GTKL  +PSRQ+L  KNF++GAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPAAINGLAGSSLTGTKLSFKPSRQSLKSKNFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGK+
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKL 144

[Close]
BLAST of Cp4.1LG02g14500 vs. TrEMBL
Match: A0A0S3T058_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G216500 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.4e-65
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQP A+ GL GSSL GTKL  +PSRQ+L  KNF++GAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPAAINGLAGSSLTGTKLSFKPSRQSLKSKNFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGK+
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKL 144

[Close]
BLAST of Cp4.1LG02g14500 vs. TAIR10
Match: AT1G52230.1 (AT1G52230.1 photosystem I subunit H2)

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-60
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 1 

Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MAS AT+AAVQP  AVKGLGGSSLAG KL ++PSRQ+   K+ +AGAVVAKYGDKSVYF+
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]
BLAST of Cp4.1LG02g14500 vs. TAIR10
Match: AT3G16140.1 (AT3G16140.1 photosystem I subunit H-1)

HSP 1 Score: 227.6 bits (579), Expect = 4.8e-60
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 1 

Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MASLAT+AAV+P  A+KGLGGSSLAG KL ++PSR +  PK+ +A  VVAKYGDKSVYF+
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]
BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: gi|778681396|ref|XP_011651500.1| (PREDICTED: photosystem I reaction center subunit VI, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.3e-71
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPV VKGLGGSSLAG KLPLRPSRQT  PKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: gi|659093383|ref|XP_008447512.1| (PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 6.2e-70
Identity = 135/144 (93.75%), Postives = 139/144 (96.53%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQP  VKGLGGSSLAG KLPLRPSRQ+  PKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: gi|567868661|ref|XP_006426953.1| (hypothetical protein CICLE_v10026722mg [Citrus clementina])

HSP 1 Score: 262.3 bits (669), Expect = 4.9e-67
Identity = 129/144 (89.58%), Postives = 138/144 (95.83%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLAT+AAVQPV +KGLGGSSLAGTKL ++P+RQ L PK+FKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: gi|568822403|ref|XP_006465620.1| (PREDICTED: photosystem I reaction center subunit VI-2, chloroplastic [Citrus sinensis])

HSP 1 Score: 259.6 bits (662), Expect = 3.2e-66
Identity = 127/144 (88.19%), Postives = 137/144 (95.14%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLAT+AAVQP  +KGLGGSSLAGTKL ++P+RQ+  PK+FKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

[Close]
BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: gi|920680498|gb|KOM27363.1| (hypothetical protein LR48_Vigan406s017300 [Vigna angularis])

HSP 1 Score: 254.2 bits (648), Expect = 1.3e-64
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = 1 

Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQP A+ GL GSSL GTKL  +PSRQ+L  KNF++GAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPAAINGLAGSSLTGTKLSFKPSRQSLKSKNFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           A  D+LPIKKGPQLPPKLGPRGK+
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKL 144

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g14500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSAH_SPIOL2.6e-6078.47Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=... [more]
PSAH2_ARATH2.2e-5980.00Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thalian... [more]
PSAH_BRACM2.9e-5980.00Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris G... [more]
PSAH1_ARATH8.5e-5977.93Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thalian... [more]
PSAH_ORYSI1.4e-5376.22Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. i... [more]
BLAST of Cp4.1LG02g14500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAW4_CUCSA2.3e-7195.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G483830 PE=4 SV=1[more]
V4RYS6_9ROSI3.4e-6789.58Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026722mg PE=4 SV=1[more]
A0A067ESN4_CITSI2.2e-6688.19Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032245mg PE=4 SV=1[more]
A0A0L9T9W4_PHAAN9.4e-6586.81Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan406s017300 PE=4 SV=1[more]
A0A0S3T058_PHAAN9.4e-6586.81Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G216500 PE=... [more]
BLAST of Cp4.1LG02g14500 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52230.11.3e-6080.00 photosystem I subunit H2[more]
AT3G16140.14.8e-6077.93 photosystem I subunit H-1[more]
BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778681396|ref|XP_011651500.1|3.3e-7195.83PREDICTED: photosystem I reaction center subunit VI, chloroplastic-like [Cucumis... [more]
gi|659093383|ref|XP_008447512.1|6.2e-7093.75PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo... [more]
gi|567868661|ref|XP_006426953.1|4.9e-6789.58hypothetical protein CICLE_v10026722mg [Citrus clementina][more]
gi|568822403|ref|XP_006465620.1|3.2e-6688.19PREDICTED: photosystem I reaction center subunit VI-2, chloroplastic [Citrus sin... [more]
gi|920680498|gb|KOM27363.1|1.3e-6486.81hypothetical protein LR48_Vigan406s017300 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009538photosystem I reaction center
GO:0009522photosystem I
Vocabulary: INTERPRO
TermDefinition
IPR004928PSI_PsaH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009522 photosystem I
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g14500.1Cp4.1LG02g14500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004928Photosystem I PsaH, reaction centre subunit VIPFAMPF03244PSI_PsaHcoord: 7..144
score: 1.2
NoneNo IPR availablePANTHERPTHR34787FAMILY NOT NAMEDcoord: 2..144
score: 8.9
NoneNo IPR availablePANTHERPTHR34787:SF1PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-1, CHLOROPLASTIC-RELATEDcoord: 2..144
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g14500Cucsa.061990Cucumber (Gy14) v1cgycpeB0085
Cp4.1LG02g14500CmaCh01G001070Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g14500CmoCh14G013400Cucurbita moschata (Rifu)cmocpeB244
Cp4.1LG02g14500Cla012670Watermelon (97103) v1cpewmB557
Cp4.1LG02g14500Csa3G483830Cucumber (Chinese Long) v2cpecuB552
Cp4.1LG02g14500MELO3C012971Melon (DHL92) v3.5.1cpemeB518
Cp4.1LG02g14500ClCG07G013150Watermelon (Charleston Gray)cpewcgB524
Cp4.1LG02g14500CSPI03G24260Wild cucumber (PI 183967)cpecpiB554
Cp4.1LG02g14500Lsi07G005080Bottle gourd (USVL1VR-Ls)cpelsiB472
Cp4.1LG02g14500MELO3C012971.2Melon (DHL92) v3.6.1cpemedB616
Cp4.1LG02g14500CsaV3_3G025000Cucumber (Chinese Long) v3cpecucB0696
Cp4.1LG02g14500Bhi01G002639Wax gourdcpewgoB0680
Cp4.1LG02g14500CsGy3G022990Cucumber (Gy14) v2cgybcpeB390
Cp4.1LG02g14500Carg04264Silver-seed gourdcarcpeB0285
Cp4.1LG02g14500Carg06475Silver-seed gourdcarcpeB0175
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g14500Cp4.1LG03g14070Cucurbita pepo (Zucchini)cpecpeB451
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g14500Wax gourdcpewgoB0724
Cp4.1LG02g14500Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG02g14500Cucurbita pepo (Zucchini)cpecpeB332
Cp4.1LG02g14500Cucurbita pepo (Zucchini)cpecpeB473
Cp4.1LG02g14500Cucurbita maxima (Rimu)cmacpeB282
Cp4.1LG02g14500Cucurbita maxima (Rimu)cmacpeB399
Cp4.1LG02g14500Cucurbita maxima (Rimu)cmacpeB921
Cp4.1LG02g14500Cucurbita moschata (Rifu)cmocpeB361
Cp4.1LG02g14500Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g14500Wild cucumber (PI 183967)cpecpiB563
Cp4.1LG02g14500Wild cucumber (PI 183967)cpecpiB589
Cp4.1LG02g14500Cucumber (Chinese Long) v2cpecuB561
Cp4.1LG02g14500Cucumber (Chinese Long) v2cpecuB588
Cp4.1LG02g14500Watermelon (Charleston Gray)cpewcgB483
Cp4.1LG02g14500Watermelon (97103) v1cpewmB536
Cp4.1LG02g14500Melon (DHL92) v3.5.1cpemeB501
Cp4.1LG02g14500Cucumber (Gy14) v2cgybcpeB947
Cp4.1LG02g14500Melon (DHL92) v3.6.1cpemedB593
Cp4.1LG02g14500Melon (DHL92) v3.6.1cpemedB626
Cp4.1LG02g14500Silver-seed gourdcarcpeB0813
Cp4.1LG02g14500Silver-seed gourdcarcpeB1053
Cp4.1LG02g14500Silver-seed gourdcarcpeB1429
Cp4.1LG02g14500Cucumber (Chinese Long) v3cpecucB0678
Cp4.1LG02g14500Cucumber (Chinese Long) v3cpecucB0728