Cucsa.059980 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.059980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Translation factor SUI1
Location	scaffold00621 : 529631 .. 531097 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACCTTTCCACACTCCCCGTTCTCCTTCCCCTTCACCTTCAGGTACAACTCTCTTCTTCTTTTtCTTCTTCTTTTTCTTCTTCCTTTTGAATTTTCATCTCATACCACTCTGTTCTGCGATGCTTTTGAGTGGGAATTCATCTCGATCACAAATTTAACTGTTGTTTTTTAAGTGTTCTAAATCTTATAAGAAACATCCTTGGTGTTGTGTTCAACTCTTATTTGTCTTCTTTGTTAAGGTGTTGCTTCTAATTAAATTTACCATTTTTAAGCTTTTGGGTTGATTAGTGATTTGGTATGGTTTTGTGTTCAGTTGGAAGAATTTAATTTTCTCTCAGTTAATACTCATTTGATTTCTACTTATTCGCCTTGTACAATTTTTCAAGATCAAAGTCAAGGATTTGATATAAGCCCATTAAGCTTTTAGTGATTTAACAAATCTTTCCTTCATCTTTTCTATATCTATGTTTATCTTCATACACATTTATTGATGAGGTAAGTCAATAAaAAAATGTGTTTATTTTATCTTGAATATAGCTTACTGGTTCACTAGTTTTCATTAGGAACACTGCATTGACGATGCTTACCACATTCTTTTTTACTTGTGAGTTTTAAAATATATCTTCTCTATCAAAAACAATTATCTGCTGATAGCCAATCTGGCTGGTTAAGCTTTCAAGGGTGAATGTTAAATAGTTTTTTtCTTTATGTGGGTTTTGGAAACAGTTTCTTGGGTGCCTTTAGTTACCACAAGCAAATTACATGGTTGATCTAGACGTCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACAACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTGCAGGACAAAGAGCTGGGGAAGATAATCCAGCTCCAAGGCGATCAGCGGAAGAACGTCTCTCAGTTCCTTGTTCAGGCCGGGCTTGTCAAGAAGGATCAAATCAAGATACATGGTTTTTAAGCAGGATCCTTAAATTGGTCTGCTGTTTATGCTGTTTGTGTGTGAATTAAGTTTTTAATCGAAGGGTCGTGGGGAGAAGGAGAGATTATATTGATGAATTGTCTTTATATATAGTGCAAGCTAAGTCTGTCTGTTTCTGTTATGGTTTGTTTTTACATTGCATTAACAATAAGAGGATTGCAATGGAATATTATGGCTTCGTTTTATTAATTAGTAAAAAGAATGTTGACAAGAATCTCCCTCACCCTTGGGCCACTTTGAAAAATAGAGATCACAATATAAGTAATCTATTACATAGGCTTACATATAACCATCTCCTAGTGTTATAAAATGCGTTTGAGAATGACGCCTGTTTTTACCTTTA

mRNA sequence

ccaacctttccacactccccgttctccttccccttcaccttcAGTTTCTTGGGTGCCTTTAGTTACCACAAGCAAATTACATGGTTGATCTAGACGTCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACAACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTGCAGGACAAAGAGCTGGGGAAGATAATCCAGCTCCAAGGCGATCAGCGGAAGAACGTCTCTCAGTTCCTTGTTCAGGCCGGGCTTGTCAAGAAGGATCAAATCAAGATACATGGTTTTTAAGCAGGATCCTTAAATTGGTCTGCTGTTTATGCTGTTTGTGTGTGAATTAAGTTTTTAATCGAAGGGTCGTGGGGAGAAGGAGAGATTATATTGATGAATTGTCTTTATATATAGTGCAAGCTAAGTCTGTCTGTTTCTGTTATGGTTTGTTTTTACATTGCATTAACAATAAGAGGATTGCAATGGAATATTATGGCTTCGTTTTATTAATTAGTAAAAAGAATGTTGACAAGAATCTCCCTCACCCTTGGGCCACTTTGAAAAATAGAGATCACAATATAAGTAATCTATTACATAGGCTTACATATAACCATCTCCTAGTGTTATAAAATGCGTTTGAGAATGACGCCTGTTTTTACCTTTA

Coding sequence (CDS)

ATGGTTGATCTAGACGTCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACAACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTGCAGGACAAAGAGCTGGGGAAGATAATCCAGCTCCAAGGCGATCAGCGGAAGAACGTCTCTCAGTTCCTTGTTCAGGCCGGGCTTGTCAAGAAGGATCAAATCAAGATACATGGTTTTTAA

Protein sequence

MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF*

Homology

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BLAST of Cucsa.059980 vs. Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.8e-47
Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDA-PGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 60
           M DL+VQ+P+AFDPFADA   D+  GTKEYVHIRVQQRNG+K LTTVQGLKKE+SY KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           KDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

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BLAST of Cucsa.059980 vs. Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 3.8e-46
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDA-PGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 60
           M +LD Q+P+AFDPFADA   D+  GTKEYVHIRVQQRNG+K LTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           KDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Cucsa.059980 vs. Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.4e-46
Identity = 89/113 (78.76%), Postives = 101/113 (89.38%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPG-TKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 60
           MVD D+QIP++FDPFA+A+ +DA G TKEYVHIR+QQRNG+K LTTVQGLKKE SYDKIL
Sbjct: 1   MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKIL 60

Query: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           KDLKK  CCNG VV DKELGK+IQLQGDQRKNVS F+VQAG+VKKDQIK+H F
Sbjct: 61  KDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113

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BLAST of Cucsa.059980 vs. Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-46
Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSD---APGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDK 60
           M DLD+QIP+AFDPFA+A   D   A G+K+YVH+R+QQRNG+K LTTVQGLKKEFSY+K
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           ILKDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

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BLAST of Cucsa.059980 vs. Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.4e-46
Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSD---APGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDK 60
           M DLD+QIP+AFDPFA+A   D   A G+K+YVH+R+QQRNG+K LTTVQGLKKEFSY+K
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           ILKDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

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BLAST of Cucsa.059980 vs. TrEMBL
Match: A0A0A0L7M8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077610 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK
Sbjct: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

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BLAST of Cucsa.059980 vs. TrEMBL
Match: A0A0A0K771_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G209580 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.3e-55
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MV+LD QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSY+KILK
Sbjct: 1   MVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           D+KK+FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

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BLAST of Cucsa.059980 vs. TrEMBL
Match: F2VQM9_CATRO (Putative eukaryotic translation initiation factor SUI1 OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-52
Identity = 100/112 (89.29%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MVDLD+QIP+AFDPFA+AKDS APG KEYVHIRVQQRNGKKCLTT+QGLKKEFS +KILK
Sbjct: 1   MVDLDIQIPTAFDPFAEAKDSGAPGAKEYVHIRVQQRNGKKCLTTIQGLKKEFSLEKILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKKDFCCNGNVVQDKELGK+IQLQGDQRKNVSQFL+ AG+VKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKVIQLQGDQRKNVSQFLITAGIVKKDQIKIHGF 112

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BLAST of Cucsa.059980 vs. TrEMBL
Match: K7LA44_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G316700 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.7e-51
Identity = 98/112 (87.50%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MVDL++Q+PSAFDPFA+A++SDAPG KEYVHIR+QQRNGKK LTTVQGLKKEFSY+KILK
Sbjct: 46  MVDLEIQVPSAFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILK 105

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKKDFCCNG VVQDKELGKIIQLQGDQRKNVS FLVQAGLV+KDQ+KIHGF
Sbjct: 106 DLKKDFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQVKIHGF 157

[Close]

BLAST of Cucsa.059980 vs. TrEMBL
Match: A0A0B2NVN3_GLYSO (Protein translation factor SUI1 like 2 OS=Glycine soja GN=glysoja_006404 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.7e-51
Identity = 98/112 (87.50%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MVDL++Q+PSAFDPFA+A++SDAPG KEYVHIR+QQRNGKK LTTVQGLKKEFSY+KILK
Sbjct: 46  MVDLEIQVPSAFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILK 105

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKKDFCCNG VVQDKELGKIIQLQGDQRKNVS FLVQAGLV+KDQ+KIHGF
Sbjct: 106 DLKKDFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQVKIHGF 157

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BLAST of Cucsa.059980 vs. TAIR10
Match: AT5G54940.1 (AT5G54940.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 204.5 bits (519), Expect = 3.4e-53
Identity = 96/112 (85.71%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MV+LD+QIPSA+DPFA+AKDSDAPG KE +HIR+QQRNGKK LTTVQGLKKE+SY++ILK
Sbjct: 1   MVELDIQIPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKKDFCCNGNVVQDKELGKIIQLQGDQRK VSQFLVQ G+ KKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]

BLAST of Cucsa.059980 vs. TAIR10
Match: AT1G54290.1 (AT1G54290.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 188.0 bits (476), Expect = 3.3e-48
Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDA-PGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 60
           M DL+VQ+P+AFDPFADA   D+  GTKEYVHIRVQQRNG+K LTTVQGLKKE+SY KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           KDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Cucsa.059980 vs. TAIR10
Match: AT4G27130.1 (AT4G27130.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 185.3 bits (469), Expect = 2.1e-47
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDA-PGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 60
           M +LD Q+P+AFDPFADA   D+  GTKEYVHIRVQQRNG+K LTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           KDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Cucsa.059980 vs. TAIR10
Match: AT5G54760.1 (AT5G54760.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 184.9 bits (468), Expect = 2.8e-47
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDA-PGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKIL 60
           M +LD Q+P+AFDPFADA   D+  GTKEYVHIRVQQRNG+K LTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           KDLKK+FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Cucsa.059980 vs. NCBI nr
Match: gi|659126887|ref|XP_008463414.1| (PREDICTED: protein translation factor SUI1 homolog 2 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 3.6e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK
Sbjct: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Cucsa.059980 vs. NCBI nr
Match: gi|449444048|ref|XP_004139787.1| (PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.6e-55
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MV+LD QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSY+KILK
Sbjct: 1   MVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           D+KK+FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Cucsa.059980 vs. NCBI nr
Match: gi|301602405|gb|ADK79108.1| (putative eukaryotic translation initiation factor SUI1 [Catharanthus roseus])

HSP 1 Score: 212.6 bits (540), Expect = 3.5e-52
Identity = 100/112 (89.29%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MVDLD+QIP+AFDPFA+AKDS APG KEYVHIRVQQRNGKKCLTT+QGLKKEFS +KILK
Sbjct: 1   MVDLDIQIPTAFDPFAEAKDSGAPGAKEYVHIRVQQRNGKKCLTTIQGLKKEFSLEKILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKKDFCCNGNVVQDKELGK+IQLQGDQRKNVSQFL+ AG+VKKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKVIQLQGDQRKNVSQFLITAGIVKKDQIKIHGF 112

[Close]

BLAST of Cucsa.059980 vs. NCBI nr
Match: gi|1009111199|ref|XP_015899773.1| (PREDICTED: protein translation factor SUI1 homolog [Ziziphus jujuba])

HSP 1 Score: 211.5 bits (537), Expect = 7.9e-52
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MV+LDVQIP+ FDPFA+AKDSDAPG KEYVHIRVQQRNGKKCLTTVQGL+K+FSY++ILK
Sbjct: 1   MVELDVQIPTTFDPFAEAKDSDAPGAKEYVHIRVQQRNGKKCLTTVQGLRKDFSYERILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKK+FCCNGNVVQDK LGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 61  DLKKEFCCNGNVVQDKVLGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

[Close]

BLAST of Cucsa.059980 vs. NCBI nr
Match: gi|694363447|ref|XP_009360995.1| (PREDICTED: protein translation factor SUI1 homolog [Pyrus x bretschneideri])

HSP 1 Score: 209.5 bits (532), Expect = 3.0e-51
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 1


Query: 1   MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILK 60
           MV+ DVQIP+AFDPFA+AKD DAPG KEYVHIRVQQRNGKKCLTTVQGLKK+FSYDKILK
Sbjct: 1   MVERDVQIPTAFDPFAEAKDVDAPGAKEYVHIRVQQRNGKKCLTTVQGLKKDFSYDKILK 60

Query: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 113
           DLKK+FCCNGNVVQDKELGKIIQLQGDQRKNV QFLVQA +VKKDQIKIHGF
Sbjct: 61  DLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVLQFLVQAKIVKKDQIKIHGF 112

The following BLAST results are available for this feature:

BLAST of Cucsa.059980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUI12_ARATH	5.8e-47	81.42	Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 P...	[more]
SUI11_ARATH	3.8e-46	80.53	Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 P...	[more]
SUI1_PIMBR	6.4e-46	78.76	Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1	[more]
SUI1_ORYSI	8.4e-46	76.52	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE...	[more]
SUI1_ORYSJ	8.4e-46	76.52	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 ...	[more]

BLAST of Cucsa.059980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7M8_CUCSA	2.5e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077610 PE=4 SV=1	[more]
A0A0A0K771_CUCSA	5.3e-55	95.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G209580 PE=4 SV=1	[more]
F2VQM9_CATRO	2.5e-52	89.29	Putative eukaryotic translation initiation factor SUI1 OS=Catharanthus roseus PE...	[more]
K7LA44_SOYBN	2.7e-51	87.50	Uncharacterized protein OS=Glycine max GN=GLYMA_08G316700 PE=4 SV=1	[more]
A0A0B2NVN3_GLYSO	2.7e-51	87.50	Protein translation factor SUI1 like 2 OS=Glycine soja GN=glysoja_006404 PE=4 SV...	[more]

BLAST of Cucsa.059980 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54940.1	3.4e-53	85.71	Translation initiation factor SUI1 family protein	[more]
AT1G54290.1	3.3e-48	81.42	Translation initiation factor SUI1 family protein	[more]
AT4G27130.1	2.1e-47	80.53	Translation initiation factor SUI1 family protein	[more]
AT5G54760.1	2.8e-47	80.53	Translation initiation factor SUI1 family protein	[more]

BLAST of Cucsa.059980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126887\|ref\|XP_008463414.1\|	3.6e-57	100.00	PREDICTED: protein translation factor SUI1 homolog 2 [Cucumis melo]	[more]
gi\|449444048\|ref\|XP_004139787.1\|	7.6e-55	95.54	PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis sativus]	[more]
gi\|301602405\|gb\|ADK79108.1\|	3.5e-52	89.29	putative eukaryotic translation initiation factor SUI1 [Catharanthus roseus]	[more]
gi\|1009111199\|ref\|XP_015899773.1\|	7.9e-52	89.29	PREDICTED: protein translation factor SUI1 homolog [Ziziphus jujuba]	[more]
gi\|694363447\|ref\|XP_009360995.1\|	3.0e-51	90.18	PREDICTED: protein translation factor SUI1 homolog [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001950	SUI1
IPR005874	SUI1_euk

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.059980.1	Cucsa.059980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001950	Translation initiation factor SUI1	GENE3D	G3DSA:3.30.780.10		coord: 4..112 score: 1.6
IPR001950	Translation initiation factor SUI1	PFAM	PF01253	SUI1	coord: 27..101 score: 2.7
IPR001950	Translation initiation factor SUI1	PROFILE	PS50296	SUI1	coord: 30..100 score: 23
IPR001950	Translation initiation factor SUI1	unknown	SSF55159	eIF1-like	coord: 3..112 score: 2.62
IPR005874	Eukaryotic translation initiation factor SUI1	PIR	PIRSF004499	Transl_init_SUI1_Euk	coord: 1..112 score: 2.8
IPR005874	Eukaryotic translation initiation factor SUI1	TIGRFAMs	TIGR01160	TIGR01160	coord: 5..112 score: 3.2
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 1..112 score: 1.9
None	No IPR available	PANTHER	PTHR10388:SF16	SUBFAMILY NOT NAMED	coord: 1..112 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.059980	Cla005312	Watermelon (97103) v1	cgywmB048
Cucsa.059980	Csa3G077610	Cucumber (Chinese Long) v2	cgycuB044
Cucsa.059980	MELO3C025375	Melon (DHL92) v3.5.1	cgymeB048
Cucsa.059980	ClCG10G005380	Watermelon (Charleston Gray)	cgywcgB049
Cucsa.059980	CSPI03G05110	Wild cucumber (PI 183967)	cgycpiB044
Cucsa.059980	Lsi05G005950	Bottle gourd (USVL1VR-Ls)	cgylsiB048
Cucsa.059980	MELO3C025375.2	Melon (DHL92) v3.6.1	cgymedB047
Cucsa.059980	CsaV3_3G005110	Cucumber (Chinese Long) v3	cgycucB046
Cucsa.059980	Cla97C10G189630	Watermelon (97103) v2	cgywmbB048
Cucsa.059980	Bhi11G000478	Wax gourd	cgywgoB049

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.059980	Silver-seed gourd	carcgyB0738
Cucsa.059980	Cucurbita maxima (Rimu)	cgycmaB0080
Cucsa.059980	Cucurbita maxima (Rimu)	cgycmaB0081
Cucsa.059980	Cucurbita moschata (Rifu)	cgycmoB0075
Cucsa.059980	Cucurbita moschata (Rifu)	cgycmoB0076
Cucsa.059980	Cucurbita pepo (Zucchini)	cgycpeB0076
Cucsa.059980	Cucurbita pepo (Zucchini)	cgycpeB0077